see, how it evolves away from the index (--> in poultry, not in wild mallards)
we had one new major reassortment in ~2008 , first seen in
Mongolia sequences. Then Japan,Vietnam
This decreased the distance to the index.
(except in Egypt,Indonesia(?) sequences)
we had one new major reassortment in ~2008 , first seen in
Mongolia sequences. Then Japan,Vietnam
This decreased the distance to the index.
(except in Egypt,Indonesia(?) sequences)
Code:
H5N1 from 2012,2013 , amino-acid differences from the bird-index in segments 1,2,3,5,7,8 name,date 15,17,20,08,14,35,>A/duck/Bangladesh/19097/2013,2013/02/14 13,10,17,05,16,31,>A/duck/Vietnam/LBM140/2012,2012/03/07 17,10,14,08,16,33,>A/muscovy duck/Quang Ninh/49/2013,2013/05/09 14,12,16,07,15,32,>A/muscovy duck/Vietnam/LBM230/2012,2012// 14,11,15,07,14,32,>A/muscovy duck/Vietnam/LBM229/2012,2012// 14,11,15,07,14,32,>A/muscovy duck/Vietnam/LBM228/2012,2012// 14,11,15,07,14,32,>A/muscovy duck/Vietnam/LBM227/2012,2012// 14,10,14,07,14,35,>A/muscovy duck/Vietnam/LBM344/2013,2013/02/06 14,10,14,07,14,32,>A/duck/Vietnam/QB1207/2012,2012/07/28 16,11,18,07,14,32,>A/muscovy duck/Quang Ninh/6/2013,2013/04/10 15,12,15,07,14,32,>A/muscovy duck/Vietnam/LBM398/2013,2013/04/09 15,12,15,07,14,32,>A/muscovy duck/Vietnam/LBM399/2013,2013/04/09 14,10,15,07,15,34,>A/muscovy duck/Vietnam/LBM295/2012,2012// 17,11,16,08,14,33,>A/muscovy duck/Vietnam/LBM436/2013,2013/06/05 15,12,14,07,18,32,>A/muscovy duck/Vietnam/LBM315/2012,2012// 16,11,18,07,14,32,>A/muscovy duck/Quang Ninh/9/2013,2013/04/10 17,10,14,08,16,33,>A/duck/Quang Ninh/53/2013,2013/05/09 17,15,13,08,17,35,>A/duck/Quang Ninh/21/2013,2013/04/10 09,15,18,07,14,31,>A/muscovy duck/Vietnam/LBM335/2013,2013/01/07 11,15,18,07,14,31,>A/muscovy duck/Vietnam/LBM330/2013,2013/01/07 04,13,17,70,14,33,>A/tiger/Jiangsu/01/2013,2013/01/20 14,11,16,08,14,33,>A/muscovy duck/Vietnam/LBM438/2013,2013/06/05 17,12,14,08,14,33,>A/Japanese white-eye/Taoyuan/Q454/2012,2012/07/12 13,10,13,07,15,31,>A/muscovy duck/Vietnam/LBM260/2012,2012// 13,11,14,07,15,31,>A/muscovy duck/Vietnam/LBM258/2012,2012// 13,11,17,05,15,31,>A/duck/Vietnam/LBM139/2012,2012/03/07 12,10,15,05,15,32,>A/duck/Vietnam/LBM133/2012,2012/03/07 12,10,15,05,15,32,>A/duck/Vietnam/LBM132/2012,2012/03/07 14,10,15,05,15,32,>A/duck/Vietnam/LBM136/2012,2012/03/07 12,09,17,06,15,32,>A/Muscovy duck/Vietnam/LBM113/2012,2012/02/07 19,10,16,08,20,39,>A/duck/Soc Trang/8/2012,2012/08/31 22,12,13,10,19,36,>A/chicken/Soc Trang/4/2012,2012/06/07 22,11,13,10,20,36,>A/chicken/Soc Trang/1/2012,2012/06/17 22,11,13,10,19,36,>A/chicken/Soc Trang/2/2012,2012/06/17 23,12,13,11,19,36,>A/chicken/Soc Trang/3/2012,2012/06/17 22,11,13,10,19,36,>A/chicken/Soc Trang/5/2012,2012/06/17 24,14,25,13,23,30,>A/chicken/Ningxia/222/2012,2012/04/13 20,12,20,11,14,31,>A/turkey/Egypt/S6405A/2012,2012/10/07 20,12,20,11,14,31,>A/duck/Egypt/S6419C/2012,2012/10/07 18,13,20,12,14,30,>A/chicken/Egypt/M7217B/2013,2013/01/31 19,11,19,12,14,32,>A/chicken/Egypt/Q5283C/2012,2012/05/06
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