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Re: Bird flu outbreak in North Wales: H7N2
OK, I looked at the 413 H7-sequences from genbank.
13 are equine H7N7 and form a separate group.
162 American sequences also form a special separate group.
That leaves 238.
Then there is a series of 89 Italian from 1999-2000
Well, I delete sequences similar to 0.3% with others and 123 were left:
OK, I looked at the 413 H7-sequences from genbank.
13 are equine H7N7 and form a separate group.
162 American sequences also form a special separate group.
That leaves 238.
Then there is a series of 89 Italian from 1999-2000
Well, I delete sequences similar to 0.3% with others and 123 were left:
Code:
0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
0000000000000000000000000000000000000111111111111111111111111111111111111111111122222222222222222222222222222222222222222222222233333333333333333333333333333333333333333333344444444444444444444444444444444444444444455555555555555555555555555555555555555555555566666666666666666666666666666666666666666667777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888889999999999999999999999999999999999999999999000000000000000000000000000000111111111111111111111111111111122222222222222222222222222222222222222233333333333333333333333333333333334444444444444444444444444444444444444445555555555555555555555555555555555556666666666666666666666777777777777777777888888
1122333334444455555555666666677888999000111222233334444555566677777888888888999900000011111122222333344444455555566677777888999900000111122223333444555555666667777788888999900000111111222333344444555556667777888899900111111122222333334444455666666777777888899900000111111222233344444456666667777888899990000000111122223333344455555566667777888899900001111222233333444445555556666667777778888899990011122222333334444555556666677888888999999001112222222357777788888889999000111122234444445566777888999900011122333344444555566666777888889999900000111122223344455556667778888990001111222233344444555555666666777888990000111222233344455566666777778899990000001112222234677788000112223468899999000000
5979026790236812345789023568918147369256147013902581457036925814789012356789245812456703567901258134701346912357814703689258124701369256801460369258123479036790256814567367902589013457369123814789035792450347036926845023456924678147890356945014679013679234514701356012358167803623458910236890258147803691234568134736892358914713467902351457035625812471389256801457023692567890134570125690125814796934801247036792589124790368958123478013469251470345679192348912356892358147036925880134695847049258124703625857016923589124702369259124780136912568147803692512701390281473469281470379025815901369025789013457039258170369258457803925814703689126894703690235891450136924847806567391256313901467012345
-codon-position-------------------------------------- 1 2 2 1 1 11 12 1 12 2 2 2 2 1 1 1 1 12 12 2 12 2 1 12 2 1 12 2 1 1 2 1 2 2 1 1 1 2 2 12 2 1 1 1 12 1 1 12 2 1 2 1 12 21 2 22 1 1 2 12 212 12 2 2 2 2 2 1 1 12 1 2 12 1 2 1 12 1 2 2 1 1 2 12 1 2 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 2 12 12 2 1 122 12 2 12 2 1 1 1 1 2 2 12 1 1 1 12 1 2 12 1212 2 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 12 1 1 2 12 2 1 1 1 2 2 1 1 1 1 1 1 1 1 12 2 2 112 2 12 12
---Index---------------------------------------------
1 >A/chicken/New South Wales/327/1997(H7N4) .A...GT.AA.CACTAC..AG...CAC....A....T.A.TTC..GGCCAGGT.A.TCT.C.A...AG.TG..A.TT..TTAT..GGGAAG.A...T..G.GTGCT.TTG...A.T..T.GTCGCAA...GAC...A.GGA.......T.......C..CC..C...GAAG.CA..A..AC..A..T.G.GC...TG....C.....C..C....T...T..GTC..C...A...A.A....CA.T.G.T.TAT...A....TG..CT.CG..A..T.G.GT..........CTGA.T...........A....T..A.....T..TAAAT..T.T..GCCT...A.TGG...TG.CTTA..GACCAG.A..A...GCA..C........GA..C.T..CC.T.A.CA.GT.TG...GC..C...GAAA.AC..C.T.......T.....GGAA.GAG...AG..TT.CCC.TG.C.C...G..T..TA..T....A..T...T.......AG..TAATA.G.GT....A.G.....G.A.A.GG.G.C...C..CC..AA.A.CT..CAG..CA.CC...TT.GA.GT.T.A...AC.A........G..TT.GTC.A..T.....AGTT...T..CA.A.A..G..CGAACAT...TG.TTA.C.C.T.GT......CA-...........A 319 312 , 317 311 1:>A/chicken/New South Wales/327/1997(H7N4)
2 >A/chicken/NSW/1/97(H7N4) AA...GT.AA.CACTAC..AG...CAC....A....T.A.TTC..GGCCAGGT.A.TCT.C.A...AG.TG..A.TT..TTAT..GGGAAG.A...T..G.GTGCT.TTG...A.T..T.GTCGCAA...GAC...A.GGA.......T.......C..CC..C...GAAG.CA..A..AC..A..T.G.GC...TG....C...A.C..C....T...T..GTC..C...A...A.A....CA.T.G.T.TAT...A....TG..CT.CG..A..T.G.GT..........CTGA.T...........A....T..A.....T..TAAAT..T.T..GCCT...A.TGG...TG.CTTA..GACCAG.A..A...GCA..C........GA..C.T..CC.T.A.CA.GT.TG...GC..C.A.GAAA.AC..C.T.......T.....GGAAAGAG...AG..TT.CCC.TG.C.C...G..T..TA..T....A..T...T.......AG..TAATA.G.GT....A.G.....G.A.A.GG.G.C...C..CC..AA.A.CT..CAG..CA.CC...TTGGA.GT.T.A...AC.A........G..TT.GTC.A..T.....AGTT...T..CA.A.A..G..CGAAC.T...TG.TTA.C.C.T.GT......CA-CACTGTCTACTA 338 327 , 337 326 2:>A/chicken/NSW/1/97(H7N4)
3 >A/chicken/Queensland/1994(H7N3) .A...GT.AA.CACT.C..AG...CAC....A..A.T.A.TTC..G.CCAGGT.A.TCT.C.A...AG.....A.TT..TTAT..GGGAAG.A.C.T..G.GTGCT.TT.T.AA.T..T..TCGCAA...GAC...A.GGA.T....GT..A.......CC..C...GAAG.CA..A..AC..A..T.G..C...TG....C.............TT..T...TC..C...A...A.A....CA.T.G.T.TAT...A....TG.GCTGTG..A..T.G.GT....A.....CTGA.T...........A....T..AG....T..TAAAT..T.T..GC.T...A.TGG...TG.CTTA...ACCAG.A..A...GCA..C........GA..C.T..CC.T.A.CATGT......GC......GAAA.AC..C.T......CT.....GGAAAGAG...AG..TT.CCC.TG.C.C.T.G..T..TA......GA..T...T........G..TAATACG.GTC...A.......G.ACA.GG.G.....C...C..AA.A.CT..CAG..CA.CC...TTGGA.GT.T.A...AC.A........G..TT.GTC.A..T.....AGTT...T..CA.A.A..G..GGAAC.T...TG.TT..C.C.T..T...A..CA-............ 317 309 , 315 308 3:>A/chicken/Queensland/1994(H7N3)
4 >A/chicken/Victoria/1/92(H7N3) AA...GT.AA.CACT.C..AG..CCAC....A..A.T.AGTTC..G.CCAG.T.A.TCT.C.A...AG..G..A.T...TTAT..GGGAAG.A.CTT..G..TGCT.TT.T.AA.T..T...CGCAA...GAC...A.GGA......GT.....G....CC..C....AAG.CA..A..AC..A..T.G..C...TG....C.............T...T...TC..CCT.A...A.A....CA.T.G.T.TAT...A....TG.GCTGT...A..T.G..T..........CTGA.T.G..G......A....T..AG.G..T..TAAAT....T..GC.T.....TGG...TG.CTTA...A.C.GCA..A...GCA..CAT......GA.CC.T..CC...A.CATGT..G.G.GC..C...GAAA.AC.ACA..............G.AAAGAA...AG..TT..CC.TG.C...T.G..T..TA......GA..T...T...........TA.TAC..GT....A.......G...A.GG.G.C...C...C..AA.A.CT..CAG..CA.TC...TTG.A.GT.TGA...AC.A........G..TT.GTC.A..T.....AGTT...T..CA.A.A.....GGAAC.T....G.TT..C.C.T..T......CA-CACTGTCTAC.T 322 310 , 321 309 4:>A/chicken/Victoria/1/92(H7N3)
5 >A/chicken/Victoria/1/1985(H7N7) ..T...T.AA.CA.T....AGC...AC....A..A.T.A.TCC..G.CCAG.T.A.TCT...A.A...CG.CAA.T...TTAT..GGGAAG.A..TT..G.GTGCT.TT.T.AA.T..T...CGCAG....AC.A...GGA......GT..........CC..C....AAG..A.....AC..A..T.G..C...T.....C.AT.........GC...T...TC..C...A...A.AG...CA.T.G.T.TA....A.T..TG.GCT.T...A..T.G..T..........C.GA.T....G....A.A...ATG.AG.G..T..TAAAT....T..GCCT.....TGG...TG.CTTA...A....CA..A...GCA..CA.......GA.CCAT..CC.T.A.CATGT..G...GC......AAAA.A..AT.....G...T.....G..AAGAGGAGAG..TT..CC.TG.C...T.G..T..T...........TC..T.G.......C.TAATG.G.GT....A.......G...A.GG.......C...C..A..A.CT..CAGGACA.TC...TTGGA.GT.TGA...AC....T.....G..TT.GTC.A..T.....AGTT.C.T..CA.A.A.....GGAAC.T....G.TT..C.C.T..TG.....C--...........A 308 295 , 302 293 5:>A/chicken/Victoria/1/1985(H7N7)
6 >A/starling/Victoria/1985(H7N7) .AT...T.AA.CA.T....AGC...AC....A..A.T.A.TCC..G.CCAG.T.A.TCT...A.A..G..G..A.T...TTAT..GGGAAG.A..TT..G.GTGCT.TT.T.AA.T..T...CGCAG....AC.A...GGA......GT..........CC..C....AAG..A.....AC..A..T.G..C...T.....C.A..........GC...T...TC..C...A...A.AG...CA.T.G.T.TA....A.T..TG.GCT.T...A..T.G..T..........C.GA.T....G....A.A...ATG.AG.G..T..TAAAT....T..GCCT.....TGG...TG.CTTA...A....CA..A...GCA..CA.......GA.CCAT..CC.T.A.CATGT..G...GC..C...AAAA.A..AT.....G...T.....G..AAGAGGAGAG..TT..CC.TG.C...T.G..T..T...........TC..T.G.......C.TAATG.G.GT....A.......G...A.GG.......C...C..A..A.CT..CAGGACA.TC..ATTGGA.GT.TGA...AC....T.....G..TT.GTC.A..T.....AGTT.C.T..CA.A.A.....GGAAC.T....G.TT..C.C.T..TG.....CA-...........A 302 295 , 300 294 6:>A/starling/Victoria/1985(H7N7)
7 >A/duck/Victoria/76(H7N?) AAT...TTAA.CA.T.....G....AT....AT.A.T.A.TTC..G.CCAG.T.A.TCT...AAA..G.TG.T..T..ATTAC..GGGC.G.A..TT.....TGCT.TT.T.AA.T..TT..T.CAGT...AC.A...G.A.......T..........CC..C....AAG.....A..AC.AA..T.G.GC.........C............GC..GTG...C..C...A...A.AG...CA.T.G.T.TA....A.T..TG.GCT.T...A..T.G.GT....A...C.C.GATT....G....ACA.C.ATG.A..G..T..TAAA.G......GCCT....TTG....T..CTTA...A....C...A.A.GCA............A..CA...CC.....CATGT..G...GC..C...AAAA.A..AT.....G...T...T.G..---.....AG..TT..CC.TG.....T.G..T..T......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 452 392 , 207 201 7:>A/duck/Victoria/76(H7N?)
8 >A/chicken/Victoria/1976(H7N7) .AT...TTAA.CA.T.....G....AT....AT.A.T.A.TCC..G.CCAG.T.A.TCT...AAA..G.TG.T..T..ATTAT..GGGA.G.A..TT.....TGCT.TT.T.AA.T..TT..T.CAG....AC.AA..G.A.......T..........CC..C....AAG.....A..AC..A..T.G.GC...T.....C..........A.GC..GTG...C..C...A...A.AG...CA.T.G.T.TA....A.T.CTG.GCT.T...A..T.G.GT........C.C.GATT....G....ACA.C.ATG.A..G..T..TAAA.G......GCCTA...TTG....T..CTTA...A....C...A.A.GCA............A..CA...CC.....CATGT..G...GC..C...AAAA.A..AT.....G...T...T.G..AAGAGGAGAG..TT..CC.TG.....T.G..T..T..........AT...T.G....C....TAATG.G..TC...A.......G...A.GG.......C...C..A..A.CT..CAG.ACA.TC...TTGGA.GT.TGA...AC...GT..A.G...TT.GTC.A..T.....AG.T...T..CA.A.A.....GAAA.......T.TT.G..T.A..TGA....CA-...........A 299 290 , 297 289 8:>A/chicken/Victoria/1976(H7N7)
9 >A/duck/Taiwan/33/1993(H7N7) ......T......CT....AG...CAC....AT...TTA.TCCG...CC.G.....TCT.C.A....G....TAC..AAT......G..AGCA..T.C.....GC.G.C.TTCA.T....GTG....T...AC.......A.T.CG..TA.......T.C...C....ATG....AA..A......T....C.GA.GT.......AG....TAG.C...TG.....AC...A...GGA...A..G..A........CATT...GG.C..CG.....TA......GA....C.A.G.TA.G..G....ACA...A.G...C...T..T.A.TGGT..T.GC.T.C..T....AT.T.CT...A......C...AT......C.....C...GATCC....CC.T..C.A..CC.G...GC.G..A.A.A.GA...TAT...G...TG..T....AAGAGGAGAG......CC..G.C..C..GC..A.TA.....A...A.C..TG..CG.CAG..TAA.C....TCGG..C..........A.GGAG....AT...C..CA.A.CT.TCCG..C..TC...TT.GA..TGTGA.....AA..TAGA.G...TT..TC.A..T.T.TCA..TT.C....A.A.A....G.A.A..TA...GTT...CTC.T.......C..--............ 290 276 , 285 274 9:>A/duck/Taiwan/33/1993(H7N7)
10 >A/FPV/Rostock/1934(H7N1) AA........T..CT....AG.....C....ATTA.TTA.TCC....CC.G...A.TCT.G.A....G.....A...AAT......G..A.CAC.TTC..C..G.AG.C.T.CA.T.C...T....AT.C.AC.A.A...A.T.CG.GT..T...GAT.CA..C.A.GATG....AA..A...A.TT...GCC.A..T.....A..G.....AGGC...T......TC..AA...A.A......G..AT........A....AG..C..C...A..T....T..GC....C.ATTATT.G.....A.ACAG.GA.G.C.CG..T..T.ACTGGT..T.G..T....T....AT.C.CT..GA..C..GC.C.AT..G.........C...GA.CC..T.CCGA....A..C......TC..C...AA...A.TATAT..TG.C...CCTTC.AAA.AGAAAAA....G.C..AGT...T..GC...CT..G...A...A.C....G..G.CAG..TAA.CTG...CG...C...T........G..G....ATC..C..CA.ATCT.TATG.AC..T....TT.GAGG.GTG......AA..TAGA..G.TT...T.TAC.T.T.T.AG.TT......A.A.AG.....A.A...A..TGTT...CTTGT..T....C....ACACTGTCTACT 320 306 , 320 306 10:>A/FPV/Rostock/1934(H7N1)
11 >A/chicken/Brescia/440b/1902(H7) ..------------------------------TTA.TTA.TCC....CC.G...A.TCT.G......G.....A...AAT......G..A.CAC..TC..C..G.AG.C.A.CA.T.C...T....AT.C.AC.A.....A.T.CG.GT..T...GAT.CA..C.A.GATG....AA..A...A.TT....C..A..T..G..A..G.....A.GC...T.........TAA...A.A......G..AT.......CA....AG..C..C...A..TA...T..GC....C.ATTATT.G.C...A.ACAG.GA.G.C.C...T..T.ACTGGTT.T.G..T....T...CAT.C.CT..GA..C..GC.C.AT..G.........C...GA.CC..T.CCG.....A..C......TC..C..GAA...A..ATAT..TG.C...CCTTC.AAAGAGACAAA....G.C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 503 432 , 194 190 11:>A/chicken/Brescia/440b/1902(H7)
12 >A/FPV/Egypt/45(H7N1) ..---------------.AAGC.C..T....A...C.TA.TCCGA.CCCCG.GAA.TCTTG......G.....A...AAT..T...G.C..T...TT...CCTGC.G.C.T.GA.T....GT.G..AT...A.AA..G..A.T.CA..T..T.G..ATACA....A.G.TG.....A..A............CGA..T....AA........A..C..G.......TC..AA...A.A.....A.G.A....A....A....AG.GC..CGA..T..AGG.T..GC.AC.C.G.G..T.........A.AG..A.G.A.CGC.TC.T.AA.GGT....GCCT....T....AT.T.CT...A.A..A.CAC.ATA.....C..........AT.C.AT.CAGT..A.A..CC.G...TT..C.A.A..A.A...CATA...A....T.TTC.AAA.AGAGAAG.GA..CCC.AAT...T.AG..T.CT..G...A...AGC..TG.....CA..GTA..C.G.GTC.............TC..G..G.C..ACCA.CACC..ATCT..CTG.ACA.T.CA..T.GA..TG........AA..TAGA.G...TT.GTC.ACA..T...A..TT.C.A.G..A.A..G...A.A..TA..T.TT...CT..T..........--............ 336 308 , 313 291 12:>A/FPV/Egypt/45(H7N1)
13 >A/chicken/Brescia/1902(H7N7) ..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..G..T....T.....T.T.CT.A------------------------------------------------------------------------------------------------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 804 657 , 8 8 13:>A/chicken/Brescia/1902(H7N7)
14 >A/duck/Hong Kong/293/78(H7N2) AA.......A....T................AT.A.TT...A.GA..C..G.G.AGTC....A..........C.T.AAAT.....G..A..A.C.TC.G...G.....G...A.TG.T.....C.AT..GCC...A...A.T.C.A.T..ACG.G...C........A.......A..A...A...A...C.....T...CAA...........T.G.T.......C...A...G.AG......G.T........C.TT...G..C......AT.TAG...GT....C.C..T...T..A.G.G....A.........CGC.TC..AAA.G.TT...GC...C..T.....T..T........C...C...AT....A..C...C....G..C..A.....T..C.AT.C...........GAGGAA...C.ACA....G.C.T...T...A.............T...C..........G..TA..A...G.....T..TGTGG........G..A.C.G..AC...A.G..................C..C..C..AA....TC.CAGGA...TCC..TT..A.GTG..A.........T.G.GG...TTC.C..A........AG..T.....G..A.A...C..A....TA.GTG.............G...C...-ACACTGTCTACT 235 223 , 234 222 14:>A/duck/Hong Kong/293/78(H7N2)
15 >A/duck/Hongkong/301/72(H7N1) .........A....T................AT.A.TT...A.GA..C..G.G.AGTC....A..........C.T.AAAT.....G..A..A.C.TC.G...G.....G...A.TG.T.....C.AT..GCC...A...A.T.C.A.T..ACG.G...C........A.......A..A...A.......C.....T...CAA...........T.G.T.......C...A...G.AG......G.T........C.TT...G..C......AT.TAG...GT....C.C..T...T..A.G.G....A.........CGC.TC..AAA.G.TT...GC...C..T.....T..T........C...C...AT....A..C...C....G..C..A.....T..C.AT.C...........G.GGAA...C.ACA....G.C.T...T...A.............T...C..........G..TA.AA...G.....T..TGTGG........G..A.C.G..AC...A.G..................C..C..C..AA....TC.CAGGA...TCC..TT..A.GTG..A.........T.GAGG...TTC.C..A........AG..T.....G..A.A...C..A....TA.GTG.............G...C..--............ 220 210 , 215 208 15:>A/duck/Hongkong/301/72(H7N1)
16 >A/turkey/England/63(H7N3) ..............T.........C.T...TAT...TT..TACG...C..G..AA.TCT...A..........A.T..A.T.....G..A..A.CTTC.....GC........A.......T..C.AT..GCC......GA.T.C.A.T..A.G.G...C...C....A.....T.A..A...A..T.GGGC..A........A..G........C...T.......C...A...GG.................A.CA.T..TG..C......AT.T.G...........C.C....T.........ACA......T..CG.ATC.T.AA.G.T....GC...CC.TT....T..T.T......C.......AT....A...........G.....A...C.T....AT.T......T....G.GGAA...C.ACA....G.C.T..CT...AA....AGAGA.......C..........G..TA.TA...G.........GTGG......G....A.C.G..TCGG...G..T.........G.G...C.CC..C..A.....TC.CAG.A...TCC..CT..A.GTG.GA........GT.G..G...TT..C...........AG..T..T...A.A.A......A.A...A..TG..............A...----............ 224 210 , 212 206 16:>A/turkey/England/63(H7N3)
17 >A/turkey/England/63(H7N3) AA............T.........C.T...TAT...TT..TACG...C..G..AA.TCT...A..........A.T..A.T.....G..A..A.CTTC.....GC........A.......T..C.AT..GCC......GA.T.C.A.T..A.G.G...C...C....A.....T.A..A...A..T.GGGC..A........A..G........T...T.......C...A...GG.................A.CA.T..TG..C......AT.T.G...........C.C....T.........ACA......T..CG.ATC.T.AA.G.T....GCG..CC.TT....T..T.T......C.......AT....A...........G.....A...C.T....AT.T......T....G.GGAA...C.ACA....G.C.T..CT...AA....AGAGA.......C..........G..TA.TA...G.........GTGG......G....A.C.G..TCGGA..G..T.........G.G...C.CC..C..A.....TC.CAG.A...TCC..CT..A.GTG.GA........GT.G..G...TT..C...........AG..T..T...A.A.A......A.A...A..TG.................C...-ACACTGTCTACT 235 223 , 234 222 17:>A/turkey/England/63(H7N3)
18 >A/parrot/Northern Ireland/VF-73-67/73(H7N1) AA.......A....T.........C.A....AT...TT...A.G.G.C..G..AA.TCT...A..........A.T..........G.....A.C.TC.....GC.G......A..........C.AT..GC........A.T...T.T..AC......C...C....A.....T.A..A...A...A...C...........A....T......C...TG......C...A...G...............TA.A.CA.T..TG..C..G...AT.TAG.G.....A...C......T.G..G................CGC.TC...A..G......GC...C..TT....T..T................AT........A......GG.....A...........T.C....C..G...G.GGAA...C.ACA....G.C.T...T...A.................C..........G..TA..ACG.G.........GTGG......G......C.G..TC.....G.........A..G.....C..C..C..A.....TC..AG.A...TCC..C...A.GTG..A.........T.G..G...TTC.CC..........A...T......A.A.A..G...A....TA..TG.............G.......-ACACTGTCTACT 206 190 , 205 189 18:>A/parrot/Northern Ireland/VF-73-67/73(H7N1)
19 >A/swan/Potsdam/63/6/81(H7N7) AA.......A....T.........C.A....AT........A.G...C..G..AA.TCT.A.A..A..G....AC...........G.....A.C.TC.....GC........A.T........C.AT..GC.A......A.T...A.T..AC.......AG......A.....T.A..A...A.T.....C....T......A...........T...T.......C.....CAG..G........T......A.CA.T..TG..C......ATGTAG.G.........C.....TT.....................CGC.TC...A..G.T....GC.G.C.TTT....T..T................AT....A..........TG.....A.....T.....T.C....G..GG..G.GGAA...C..CA....G.C.T...T...A..G.........A....C...T...G..G..TA.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 388 325 , 135 130 19:>A/swan/Potsdam/63/6/81(H7N7)
20 >A/swan/Germany/62/81(H7N7) ..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...ATCTAG.G.........C.....TT.....................CGC.TC...A..G.T....GC...C.TTT....T..T................AT....A..........TG.....A.....T.....T.C....G..GG..G.GGAA...C..CA....G.C.T...T...A..G.........A....C...T...G..G..TA..A.....A..A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......ATCACT 632 520 , 70 68 20:>A/swan/Germany/62/81(H7N7)
21 >A/duck/Germany/15/80(H7N7) ..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...AT.TAG.G.........C.....TT.....................CGC.TC.T.A..G.T....GC...C.TTT....T..T..............C.AT....A..........GG.....A.....T.....T.C.......G...G.GGAA...C..CA....G.C.T...T...A..G.........A....C...T...G..G..TA..A...G.A..A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......ATCACT 631 520 , 69 68 21:>A/duck/Germany/15/80(H7N7)
22 >A/tern/Potsdam/342/6/79(H7N7) AA.......A....T.........C.A....AT...T....A.....C..G..AA.TCT...A..A..G....A............G.....A.C.TC.....GC........A.T........C.AT..GC.A......A.T...A.T..AC.......AG......A.....T.A..A...A.T.....C...A.......A...........T...T.......C..A..CAG..G.G......T......A.CA.T..TG..C......AT.TAG.G.........C.....TT.....................CGC.TC.T.A..G.T....GC...C.TTT....T..T..............C.AT....A..........GG.....A.....T.....T.C.......G...G.GGAA...C..CA....G.C.T...T...A..G.........A....C...T...G..G..TA..A...GG...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 377 316 , 138 131 22:>A/tern/Potsdam/342/6/79(H7N7)
23 >A/turkey/England/192-328/79(H7N3) AA.......A..A.T.........C.A....AT...T....A.G...C..G..AA.TCT...A.....G....A.T..........G.A...A.C.TC.....GC........A.T........C.AT..GC.A......ACT...A.T..AC.......AG....A.A.....T.A..A...A.T.....C...........A...........T...T.......C.....CAG..G........T......A.CA.T..TG..C......AT.TAG.G.........C.....TT....G................CGC.TC...A..G.T....GC...C..TT....T..T................AT....A..........GG.....A.....T.....T.C.......G...G.GGAAA..C..CA....G.C.T...T...A..G.........A....C...T...G..G..TA..A...GG........GTG.......G......C.G..TC.....GT.......C.........C..C..C..AA....T..CAG.A...TCC..CTG.A.GTG..A.........T.GAAGG.TTTC.CC...A..T...AG..T...A..A.A.A....G.A....TA...G.T..G.....A..G.......-ACACTGTCTACT 218 207 , 217 206 23:>A/turkey/England/192-328/79(H7N3)
24 >A/turkey/England/647/77(H7N7) AA.......A....T.........C.A....AT...T....A.....C..G..AA.TCT...A..........A.T..........G.....A.C.TC.....GC........A.T........C.GT..GC.A......A.T...A.T..AC.......AG....A.A.....T.A..A..AA.T.....C..........AA...........T...T.......C.....CAG..G........T......A.CA.T..TG..C......AT.TAG.G.........C.....TT....G.T..............CGC.TC...A..G.T....GC...C..TT....T..T................AT....A..........GG.....A.....T.....T.C.......G...G.GGAA...C..CA....G.C.T...T...A..G..............C...T...G..G..TA......GG.T......GTG.......G..T...C.G..TC.G...GT.................C..C..C...A....TC.CAG.A...TCC..CT..A.GTG..A.........T.GAAG..TTTC.CC.....AT...AG..T..T...A.A.A....G.A....TA...G.TT.G.....A..G.......-ACACTGTCTACT 214 203 , 213 202 24:>A/turkey/England/647/77(H7N7)
25 >A/goose/Leipzig/137/8/1979(H7N7) AA.......A.C..T.........C.A...TAT...T....A.G...C..G..AA.TCT...A..........A.T..........G.....A.C.T......GC........A.T........C.GT..GC.A......A.T...A.T..AC.......A.......A.....T.A..A...A.T..G..C......A....A...........T...T.......C.....CAG..G........T...T..A.CATT..TG..C......AT.TAG.G..T......C.....TT....G................CGC.TC...A..G.T....GC......TT....T..TC..........T....AT....A..........GG....AA.....T.....T.C...........G.GGAA...C..CA....G.C.T...T...AAAG..........T...C...T...G..G..TA..A...GG........GTG.......G......C.GG.TC.....GT............A.C..C..C..C..AA....TC.CAG.A...T.C..CT..A.GTG..A...A.....T.GAAG..TTTC.CC......T...AG..T......A.A.A....G.A....TA...G.T..G.....A..G.......-ACACTGTCTACT 220 208 , 219 207 25:>A/goose/Leipzig/137/8/1979(H7N7)
26 >A/goose/Leipzig/187/7/1979(H7N7) AA.......A.C..T.........C.A...TAT...T....A.G...C..G..AA.TCT...A..........A.T..........G.....A.C.TC.....GC........A.T........C.GT..GC.A......A.T...A.T..AC.......A.......A.....T.A..A...A.T..G..C......A....A...........T...T.......C.....CAG..G........T...T..A.CATT..TG..C......AT.TAG.G..T......C.....TT....G................CGC.TC...A..G.T....GC......TT....T..TC..........T....AT....A..........GG....AA.....T.....T.C........G..G.GGAA...C..CA....G.C.T..CT...AAAG..........T...C...T...G..G..TA..A...GG........GTG.......G......C.GG.TC.....GT............A.C..C..C..C..AA....TC.CAG.A...T.C..CT..A.GTG..A...A.....T.GAAG..TTTC.CC......T...AG..T......A.A.A....G.A....TA...G.T..G.....A..G.......-ACACTGTCTACT 225 211 , 224 210 26:>A/goose/Leipzig/187/7/1979(H7N7)
27 >A/macaw/England/626/80(H7N7) .........A.C..T...A.....C.A.G..AT...T.A..A.G...CC.G..AA.TCT..GA.A........A.T..A.......G.....A.C.TCG....GC........A..........C.AT..GC.A......A.T...A.T..CC.......A..C....A.....T.A..A.....T.....C.......TG..A........A..T...T.......C.......G..G......G.T......ACCA....TG..C......AT.TAG.G...G.....C......T....G................CGC.TC...A..G.T....GC...C..TT....T..T................AT....A.....G....GG.....A.....T.....T.CC......G...G.GGAAA..C..CAT...G.C.T...T...A..G..............C...T...G..G..TA..AC..GG.G......GTG............A.C.G..TC.....GT..........C.....T...C..C..AA....TC.CAG.A...TCC..CT..A.GTG..A.........T.GAAG..TTTC.C.......T...AG..T......A.A.A....G.A....TA...G.T..G...T.A..G.......-ACACTGTCTACT 219 210 , 218 209 27:>A/macaw/England/626/80(H7N7)
28 >A/chicken/England/71/82(H7N1) ........AA.C..T..A......C.A.G..AT...T....A.G...C..G..AA.TCT..GA..........A.T..A.......G.....A.C.TC.....GC........A............AT..GC.A......AGT...A.T..CC.......A..C....A.....G.A..A.....T.....C.G......G..A...........T...T.......C.......G..G......G.T......A.CA.TC.TG..C......AT.TAG.G...G.....C......T....G................CGC.TC...A..G.T....GCC..C..TT....T..T................AT....A.....G....GG.....A.....T.....T.CC..........G.GAAA...C..CAT...G.C.....T...A..G..............C...T...G..G..TA..A...GG.G......GTG.....TAG....A.C.G..TC.....GT..........C.....T.A.C..C..AA....TC.CAG.A...TCC..TT..A.GTG..A.........T.GAAG..TTTC.C.......T...AG..T......A.A.A....G.A....TA...G.T..G.T...A..G......--............ 211 197 , 204 195 28:>A/chicken/England/71/82(H7N1)
29 >A/chicken/Hebei/1/2002(H7N2) AA.......A.C..T.........C......AT...T....A.G...C....G...TCT...A..........A.T.......C.....A..A.C.TC.....GC........A..........C.AT..G..A......A.......T..ACG......A.......A.....T...TA.......A......A........A....G......TT..T.......C..........G...............A.CA.T...G..G......AT.T...G.........C..T...T....G.G....A..........GC..C...A....T....GC......T........T...........G....AT....A..........GG.....A.....T.....T.C...........G.G.AA...C..CA....G.C.....T...A.................C.............TA................GT.G.....AG......C.G..TC.G...G...........................AA...CTC..AG.....TCC..CT..A.G.G..A......A..T.G..G.C.TTC.................T......A.A.A....G.A.....A...G.............G.......-ACACTGTCTACT 169 158 , 168 157 29:>A/chicken/Hebei/1/2002(H7N2)
30 >A/Afri.Star./Eng-Q/938/79(H7N1) ....C....A.C..T.........C......AT...T....A.G...CT...G...TCT...A..........A.T.......C.....A..A.C..C.....GC........A..........C.AT..G..A......A.......T..ACG...T..A...TA.GA.....T...TA.......A...............A....G......TT..T.......C..........G...............A.CA.T...G..G......AT.T...G.........C..T...T....G.G....A..........GC......A....T....GC......T........T...........G....AT....A..........GG.....A.....T.....T.C...........G.G.AA...C..CA....G.C.....T...A.................C.............TA................GT.G.....AG......C.G..TC.G..CTTATCA......A............A..AA...CTCT.AG.....TCCA.CT..AGCTT..A......A..T.G..G.C.TT...A..............T......A.A.A....G.A.....A...G.............G......--............ 189 160 , 184 158 30:>A/Afri.Star./Eng-Q/938/79(H7N1)
31 >A/turkey/Israel/Ramon/79(H7N2) AA.......A.C..T.........C......AT...T....A.G...C........TCT...A..........A.T................A.C.TC.....GC...................C.AT..GC.A......A.....A.T..AC.......A.......A.....T....A...A...................A....G......T...T.......C..........G...............A.CA.T...G..G.G....AT.T...G.........C..T...T....G.G....A..........GC..C...A....T....GC......T........T...........G....AT....A..........GG.....A.....T.....T.C...........G.G.AA...C..CA....G.C.T...T...A.................C.............TA................GT.G.....AG......C.G..T......G...........................AA...CTC..AG.....TCC..CT..A.G.G..A......A..T.G..G...TTC.................T......A.A.A....G.A.....A...G.............G.......-ACACTGTCTACT 161 151 , 160 150 31:>A/turkey/Israel/Ramon/79(H7N2)
32 >A/chicken/Ireland/1733/89(H7N7) ..-.....AA.C..T.........C....G.AT...T....AC....C........TCT..............A.T.A..............ACC.TC.....GC...................C.AA..GC.A......A.....A.T..TC.......A..CT...A.....TA...A...A..T................A....G......T...T.......C........................A.A.C..T...G..C......AT.T...GT........C..TG..T....G.G....A..........GC.T....A....T....GC......TT.......T....G...C.T.....AT....A...........G.T...A.....T.....T.C...........G....A......CA....G.C.T..CT...A.................C........TA...T.C......G.G......G.GG.....A.......C.G..T......G.............A.............AA....T...AG.A...TCC..CT..A.G.G..A......A..T.G..G.C.TTC..............G..T......A.A.A....G.A.....A..TG.T...CTTTT..T---------............ 185 166 , 166 156 32:>A/chicken/Ireland/1733/89(H7N7)
33 >A/duck/Heinersdorf/S495/6/86(H7N7) AA....T..A.C..C.........C......AT...T....ACG...C........TCT...A..........A.T..A..........A......TC.....GC.C......A............AT..GCCA.....GA.....A.T..AC.......A.......A.....T....A...A..T.............T..A..G.GT.....TT..T.......C..AA.....A......G.........A.CA.TC..G..C.G....AT.T...G.G.......C..T...T.G..G.G....A.......G..GC..C...A....T....GC.T....TT....T..TC..........G....AT..G.A...........G.....C.....T.......C...........G.G.AA....T.CA......C.T...T...A.................C.........A...TAC.A.............G.GG.....AG......C....TC.....G......TG...................AA....T...AG..CA.TCC..CT..A.G.G..A......A....G..G....TC............C....T......A.A.A....G.A.....A...G.T..........TG..A....-ACACTGTCTACT 190 177 , 189 176 33:>A/duck/Heinersdorf/S495/6/86(H7N7)
34 >A/chicken/Jena/1816/87(H7N7) AA....T..A.C..T.........C......AT...T....ACG...C........TCT...A..........A.TT.A..........A......TC.....GC........A............AT..GCCA.....GA.....A.T..AC.......A.......A.....T....A...A..T.............T..A....GTC....TT..T.......C..A......A................A.CA.TC.TG..C.G....AT.....G.G.......C..T...TAG..GAG....A.......G..GC..C...A....T....GC.T....TT....T..TC..........G....AT....A...........G.......T...T.......C...........G.G.AA......CA......C.T...T...A.................C.........A...TAC.A.....A....G..G..G......G......C....TC.....G......T............A.......AA....T...AG..CA.TCC..CT..A.G.T..A......A....G..G...TTC............C....T......A.A.A..G.G.A.....A...G.T..........TG..A.....ACACTGTCTACT 188 176 , 188 176 34:>A/chicken/Jena/1816/87(H7N7)
35 >A/gull/Italy/692-2/93(H7N2) AA.......A.C..T.........C......AT...T....ACG............TCT..............A.T.........C......A...TC...G.GC...T.........T.....C.AT..GC.A......A.....A.T..AC.......A.......A.....T....A...A..T...........A....A....G......T...T.......C..........................A.CA.T...G..C.G....AT.T...G.........C..T...T....G.G.A..A..........GC..C...A....T....GC......TT.......T...........G....AT....A...........G.....A.....T.....T.C...........G.G.AA......CA....G.C.T...T...A.................C.........A...TA................G.GG.....AG......C.G...C.....G...........................AA....T...AG.....TCCA.CT..A.G.G.GA......A..T.G..G...TTC.................T.C....A.A.A....G.A....TA...G.T..........TG..A....-ACACTGTCTACT 171 160 , 170 159 35:>A/gull/Italy/692-2/93(H7N2)
36 >A/gull/Shimane/91/88(H7N8) ..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.............A..A.T...G.GC.......T.TT..G.........C..T...T....................G.GC.TC...A....T....GC......TT..........A........G..C..T....A.................A.G...T...C.T.C.......G...G.G.AA...C..TA....G..CT...T...A..........A..T...C.A.T...G.....TA.T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 601 490 , 58 57 36:>A/gull/Shimane/91/88(H7N8)
37 >A/peregrine falcon/U.A.E./188/2384/98(H7N3) AA.A....AAGC..T.......A.C.......T.T.T..C.A.G...CG.......T.TG....A......G.A.T..........G.....A...TC.....GC.........G......T.G..GA...C.A......AC......T.C...G.......G.....A.....G....A.A........G........T...............T...T.AT....C..T........G.....GGT....A.A.TA.T...G..CT.T..GAT...............C..T..TT...........A........G.GC..C...A.T..T.....A...C..TT....TTGTC....A.A....C...............G...........A.....T....A..C.......G...G.G..A..A...CA...TG.C.T..CT...AA.-..AGAAA..A....C.A......T....T..A....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 379 318 , 134 127 37:>A/peregrine falcon/U.A.E./188/2384/98(H7N3)
38 >A/chicken/Pakistan/CR2/95(H7N3) AA.A....AA.C..T.......A.C.......T...T..C.A.G...CG.......T.T...A.A......G.A.T................A...TC.....GC....G...........T.G..GA...C.A......A.......T.C...G.......G.....A.....G....A.A.A......G........T...............T...T.AT..A.C...........G.....GGT....A.A.TA.T...G..CT.T..GAT...G...........C..T...T...........A........G.GC..C...A.........GA...C..T.....TT.T.......A....C...............G...........A.....T....A..C.....A.G...G.G..A..A...CA...TG.C.T..CT...AA.-..AGAAA.......C.AA.....T....T.............T...G.G.A............C.G..TC.....G..T.CG.......A..........CA..AAAA.T.T........T.C..T...A....T........A.GT........TT...C.....A........T.C..T...A.A......A..CA.A................T.........CCCGTTACTACT 187 175 , 186 174 38:>A/chicken/Pakistan/CR2/95(H7N3)
39 >A/chicken/Pakistan/16/99/95(H7N3) AA.A....AA.C..T.......A.C.......T...T..C.A.G...CG.......T.T...A.A......G.A.T................A...TC.....GC....G...........T.G..GA...C.A......A.......T.C...G.......G.....A.....G....A.A.A......G........T...............T...T.AT....C.........A.G.....GGT....A.A.TA.T...G..CT.T..GAT...G...........C..T...T...........A........G.GC..C...A.........GA...C..T.....TT.T.......A....C...............G...........A.....T....A..C.....A.G...G.G..A..A...CA...TG.C.T..CT...AA.-..AGAAC.......C.AA.....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 387 321 , 123 117 39:>A/chicken/Pakistan/16/99/95(H7N3)
40 >A/chicken/Pakistan/34669/1995(H7N3) AA.A....AA.C..T.......A.C.......T...T..C.A.G...CG.......T.TG....A......G.A.T................A...TC.....GC....G...........T.G..GA...C.A......A.......T.C...G.......G.....A.....G....A.A.A......G...A....T...............T...T.AT....C...........G.....GGT....A.A.TA.T...G..CT.T..GAT...G...........C..T...T...........A........G.GC..C...A.........GA...C..T.....TT.T.......A....C...............G...........A.....T....A..C.....A.G...G.G..A..A...CA...TG.C.T..CT...AA..AAAGAAA.......C.AA.....T....T.............T...G.GGA............C.G..TC..A..G..T.CG.......A..........CA..AAAA.T.T........T.C..T........T........A.GT........TT...C.....A........T.C..T...A.A......A..CA.A................T........-ACACTGTCTACT 189 178 , 188 177 40:>A/chicken/Pakistan/34669/1995(H7N3)
41 >A/non-psittacine/England-Q/1985/89(H7N7) ......T..A.CT.T......C..A....G.A....T......G...C........T.TG....A........A.T..........GGC...A..........GC......T..............A....C.A......A.....A.T...CG..............A.....T....A...A...........................TA..T...TCG.....C...............A..........A.CA.....G..CTG.....T.T.....G..C....C..T...T...........A........G.GC..C...A.........GC......T........T..............................................T.....T.C.......G...G.GC.A......CA....GA..T..CT...A............A....C...T......G..TA............T...G..G.....AG......C....TC.....G..T..GT.........C........T...C...T..........TCC..C...A.............A.GT.......TT.C...T.............T........A.AG.....A.....A........................-GACACTGTCTACT 148 139 , 147 138 41:>A/non-psittacine/England-Q/1985/89(H7N7)
42 >A/softbill/South Africa/142/92(H7N4) AA.......A.C..T......C..C......A...CT....A.G...C....G.A.T.T..............A.T.AA.......G.....A..........GC......T..............A.C..C.A.....GA.....A.T...CG..............AT....TA..A....A...........................T...T...TG......C.......C.....T.A..........A.CA.T...G..CTG.....T.T.....G..C...GG..T...T...........A........G.GC..C..AA.........GC......T........T......G.............................T.........T...C...T.......G...G.GC.A......CAT...G.C.T..CT...A................AC...T.........TA.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 361 296 , 108 101 42:>A/softbill/South Africa/142/92(H7N4)
43 >A/ostrich/South Africa/5352/92(H7N1) AA.......A.C..T.........C......A....T..C..................T.....A.............A.......G.....A.......C...C.G...................A......A..A...A.......T...C...............A....TT....A...A...........................T...T...........C.......................T..A..A.T...G..ATG.G...T.T..G.....C...GG......TA..........A..........G...C...A....T....GC......T........T..............................................T.......C.......G...G.G..A......CA..T.G.C.T...T...A................CC.............TA.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 334 270 , 80 75 43:>A/ostrich/South Africa/5352/92(H7N1)
44 >A/ostrich/South Africa/1069/91(H7N1) AA.......A.C..T.........C......A....T..C..................T.....A.............A.......G.....A.......C...C.G...............G...A......A..A...A.......T...C...............A....TT....A...A...........................T...T...........C..........................A..A.T...G..ATG.G...T.T..G.....C....C......T...........A..........G...C...A....T....GC......T........T..............................................T.......C.......G...G.G..A......CA..T.G.C.T...T...A................CC.............TA.......G....T...GT.G.....AG........G..TC.....G...................A...C....A....T........A..CC..C...A.............A..T........TTC.................T........A.A......A.....A..........A.............-GACACTGTCTACT 129 118 , 128 117 44:>A/ostrich/South Africa/1069/91(H7N1)
45 >A/duck/Nanchang/1904/1992(H7N1) AA.......A.C..T................A.T..T....A....GC..........T....AA.....................G.................C.....................A....C.A..A..GA.......T................A..A.....T....A...A...........................T...T...........C..........................A.CA.T...G..CTG.G...T.T........C....C....A.T...........A..........G...C...A.........GC......T........T..............................................T.......C....G.GG...G.G.......T.CA....GAC.T...T...A.A.........G.....C.............TA.......G....T...G..G.....AG........G..TC.....G............................A....T..........TCC..C...A.............A..T........TTC..........C......T......A.A.A......A.....A........................-GACACTGTCTACT 129 118 , 128 117 45:>A/duck/Nanchang/1904/1992(H7N1)
46 >A/magpie-robin/China/28710/93(H7) ..-----------------.....C......A.T..T.........GC..........T.....A.......................................C.....................A....C.A..A..GA.......T................A..A.....T....A...A..........A................T...T...........C......T...................A.CA.T...G..CTG.G...T.T........C....C....A.T.........A.A..........G.A.C...A.........GC......T........T..............................................T.......C....G.GG...G.G.......T.CA....GAC.T...T...A.A.........G.............------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 356 290 , 71 69 46:>A/magpie-robin/China/28710/93(H7)
47 >A/common iora /Singapore/F89/95(H7N1) AA.......A.C..T.........C.A....A.T..T.....C...GC..........T.....A.......................A..........G.G..CA....................A....C.A..A..GA.......T...CG....A......A..A.....T....A...A...........................T...T.....AC....C...A......................A.CA.T..TG..CTG.G...T.T........C.A..C......T...........A...............C..A.........GC......T...C.T..T.........................C....................T.......C.......GG.CG.G.......T.CA....GAC.T...T...A...........G.....C......................G....T......G.....AG........G..TC.....G..........A..A..............A...CT..........TCC..C...A.............A..T........TTCG.......A.C......T......A.A.AG.....A.....A........................-GACACTGTCTACT 144 133 , 143 132 47:>A/common iora /Singapore/F89/95(H7N1)
48 >A/fairy bluebird/Singapore/F92/94(H7N1) AA.......A.C..T.........C.A....A.T..T...T.....GC..........T.....A.....................G............G.G..C.....................A....C.A.AA..GA.......T...CG....A......A..A.....T....A.A.A.....................A.....T...T.....A.....C...A...A..................A.CA.T..TG..CTG.G...T.T........C.A..C......T..............................A.........GC......T........T.........................C....................T.......C..........CG.G.......T.TA.....AC.T...T...A...........G.....C......................G....T...G..G.....A.........G..TC.....G..........A..A..............A...CT.....G....TCC.AC...A.............A..T........TTC.......T..C......T......A.A.A......A.....A........................-GACACTGTCTACT 138 128 , 137 127 48:>A/fairy bluebird/Singapore/F92/94(H7N1)
49 >A/conure/England/766/94(H7N1) .........A.C..T.........C.A....A.T..T.........GC................A.....................G............G.G..C.....................A....C.A..A..GA.......T...CG....A......A..A.....T....A...A...A.......................T...T.....A.....C...A...A..................A.CA.T..TG..CTG.G...T.T........C.A..C......T..A........A..................A.........GC......T........T.........................C....................T.......C..........CG.G.......T.CA....GAC.T...T...A...........G.....C......................G....T...G..G.....A.........G..TC.....G..........A..A..............A...CT..........TCC..C...A.............A..T........TTC.......T..C......T......A.A.A......A.....A........................-GACACTGTCTACT 132 123 , 131 122 49:>A/conure/England/766/94(H7N1)
50 >A/parrot/England/1174/94(H7N1) AA.......A.C..T.........C.A....A.T..T.........GC..........T.....A.....................G............G.G..C.....................A....C.A..A..GA.......T...CG....A......A..A.....T..G.A...A..................A........T..CT.....A.....A...A.........A............A.CA.T..TG..CTG.G...T.T........C.A..C......T..A........A.............T....A.........GC......T........TC........................C.....AG.............T.......C.......G..CG.G.......T.CA.A..GAC.T...T...A...........G.....C..............A.......G....T...G..G.....AG........G..TC.....G..........A..A..............A...CT..........TCC..C...A.............A..T........TTC..........C......T......A.A.A......A.....A........................-GACACTGTCTACT 147 135 , 146 134 50:>A/parrot/England/1174/94(H7N1)
51 >A/conure/England/1234/94(H7N1) AA.......A.C..T.........C.A....A.T..T.........GC..........T.....A.....................G............G.G..C.....................A....C.A..A..GA.......T...CG....A......A..A.....T....A...A......................G....T...T.....AC....C...A......................A.CA.T..TG..CTG.G...T.T..G.....C.A..C......T..A........A..................A.........GC......T........TC........................C......G.............T.......C.......G..CG.G.......T.CA.A..GAC.T..CT...A...........G.....C..............A.......G....T...G..G.....AG........G..TC.....G..........A..A..............A...CT..........TCC..C...A.............A..T........TTC..........C......T......A.A.A......A.....A.........................GACACTGTCTACT 143 132 , 143 132 51:>A/conure/England/1234/94(H7N1)
52 >A/parakeet/Netherlands/267497/94(H7N1) AA.......A.C..T.........C.A....A.T..T.........GC..........T.....A.....................G............G.G..C.....................A....C.A..A..GA.......T...C.....A......A..A.....T....A...A...........................T...T....GA.....C...A......................A.CA.T..TG..CTG.G...T.T........C.A..C......T...........A..................A.........GC......T........T.......T.................C.....A..............T.......C.......G..CG.G.......T.CA....GAC.T...T...A...........GA....C......................G....T...G..G.....AG........G..TC.....G..........A..A..............A...CT..........TCC..C...A.............A..T........TTC..........C......T......A.A.A......A.....A........................-GACACTGTCTACT 137 127 , 136 126 52:>A/parakeet/Netherlands/267497/94(H7N1)
53 >A/turkey/Ireland/PV74/1995(H7N7) AA.......A.C..T.........C.A....A....T.....C...............T.....A.....................G..A..............C.....................A......AA.A...A.......T...................A.G...T....A...A...........................T...T...........CC............T............A..A.T..TG..CTG.G...T.T........C....C..T..TT...........A..........G.......A........CGC......T.......GT.....A..C.......AG........................C...T.....T.C.......G...G.G..A..A...CA....G.C.TG..T...A.................C..........G..TA.......G....T...G..G......G....T...G..T......G.................................T...........CC..C...A....T...A....A..T....G...T.C..C.........C.GT..........A.A.A....A.....A...G....................-GACACTGTCTACT 140 126 , 139 125 53:>A/turkey/Ireland/PV74/1995(H7N7)
54 >A/turkey/Northern Ireland/VF-1545 C5/98(H7N7) AA.T.....A.C..T.........C.A....A....TT....C...............T.....A.......T.............G.................C.....................A......AA.....A.......T................A..A.....T....A..AA..................A........T...T........C..C.............T............A..A.T.C.G..CTG.G...T.T........C....C..T..T.A........A.A..........G.....T.A........CGCC.....T........T.....A..C.......AT........................C..GT.......C.TGA...G...G.G..A..A...CA....G.C.TG..T...A.................C..........G..TA.......G....TT..G..G...........T...G..T......G......................T...T.A....T...........CC..C...A....T........A..T....G...T.C..C....T....C.GT..........A.A.A....A.....A..T.....................-GACACTGTCTACT 147 137 , 146 136 54:>A/turkey/Northern Ireland/VF-1545 C5/98(H7N7)
55 >A/turkey/Ireland/PV8/95(H7N7) TA.T.....A.C..T.........C.A....A....T.....C...............T.....A.......T.............G.................C.....................A......AA.....A.......T................A..A.....T....A...A..................A........T...T........C..C.............T............A..A.T.C.G..CTG.G...T.T........C....C..T..T.A....A...A.A..........G.A...T.A........CGCC.....T........T.....A..C.......AT........................C..GT.......C.TGA...G...G.G..A..A...CA....G.C.TG..T...A.................C..........G..TA.......G....TT..G..G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 327 269 , 99 94 55:>A/turkey/Ireland/PV8/95(H7N7)
56 >A/England/268/1996(H7N7) AA.......A.C..T.........C.A....A....T.....................T.....A.......T.............G.................C.....................A......AA.....A.......T................AA.A.....T....A...A...........................T...T........C..C.............T............A..A.T...G..CTG.G...T.T........C....C..T..T.....G......A..........G.......A.........GC......T........T.....A..C.......AG........................C..GT.......C...A...G...G.G..A..A...CAT...G.C.TG..T...A.................C..........G..TA.......G....T...G..G...........T...G..T......G......................T...T.AA...T...........CC..C...A....T........A..T..A.G...T.C..C....T....C.GT..........A.A.A....A.....A........................-GACACTGTCTACT 139 127 , 138 126 56:>A/England/268/1996(H7N7)
57 >A/Mallard/Sweden/56/02(H7N7) .........A.C..T...........A....A....T.........G...........T...A.A.............A.......G.............C...C.....................A......A..A...A.......TA.T......A.........A.G...T....A...AG...G..............A..G....TA..T.....A..C..C.........A..G.............A..A.T...GGGCAG.G...T.T........C....C..T..T...T........A..........G......AA........CG.......T........T.....A..C.......AG...........C.....C...A..C..GT.......C.T.A..GG........A..A.T.CA....G.C.T...T...A.............T...C.............TA.T.....G....T...G..G.........T.T...G.........G.........AA...........T...T.A...CT...........CC..T...A.G..T...A....A.......G.....C..C........T..GT..........A.A.A....A.....A..T.....G..C....T.A.A...--............ 147 136 , 142 134 57:>A/Mallard/Sweden/56/02(H7N7)
58 >A/ostrich/South Africa/M320/96(H7N7) AA.........C.AT................A...CT.....................T.....A............A........G................CC.G...........T.......A......A..A...A.......T...C...............A.....TA...A...A............G......A.......T...T...........C...................T......A..A.T..AG..CTG.GA.A..T......T.C....C......T..A.....A..A..............C..CA..G......GCC....................A........C............T............A.....T........C......G...GAG.AAA.....CA......C.T...T....................CC.......G.....TA.......G....T...G.GG.....AG........G..TC.....G...........C................A.................C..C...A.........A...A..T........T.C...................C.......AA....G.A....TA...G....................-GACACTGTCTACT 139 125 , 138 124 58:>A/ostrich/South Africa/M320/96(H7N7)
59 >A/teal/Taiwan/WB2-37-2TPFE2/98(H7N1) AA........GC...................A...CT.....................T.....A........A............G..A........G.....C.....................A......A..A...A.......T...C.G.....A...T...A......A...................................T...T...........C.......C.......................T...G..CT.G.....GT.............CG.....T.........................TC...A.........GC............T.....A..A.............C...A..........G....A......T...............G...G.GC.A......CAT...G...TG..T...................CCC..C..G....G..TA........A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 319 260 , 78 73 59:>A/teal/Taiwan/WB2-37-2TPFE2/98(H7N1)
60 >A/duck/Taiwan/4201/99(H7N7) ..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......T...G..CT........T.............CG.....T.........................TC....A........GC............T.....A..A.............C...A..........G....A......T..........G....G...G.GC.A......CAT...G...TG..T...................CCC.....G....G..TA..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 597 486 , 41 41 60:>A/duck/Taiwan/4201/99(H7N7)
61 >A/swan/Shimane/42/99(H7N8) AA.............................A....T...........................A.....................G.A...............C.....................A......A..A......C........C...C..............G.......A...A......................G....G...C.........A.C..A.......................A........G..CT........T.......G.A........A.T...........A..............C...A.........GC.....................A........................................T..C............G...G.G..A......CA....G....GG.T.....................C.............T........G....T...G........A.........G..TC................A.................AA..........A..T..C..C...A.........A...A..T........T............C........................A.....A................T..................... 83 75 , 82 75 61:>A/swan/Shimane/42/99(H7N8)
62 >A/Hong Kong/301/78(H7N1) ..----------------------------------------------------------------------------------------------------------------............A......A..A......C........C...C..............G.......A...A......................G....G...C..G........C..A.......................A........G..CT......T.T.......G..........A.T...........A..............C...A.........GCG....................A...................................-------------------------------------------.---------------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 515 420 , 32 31 62:>A/Hong Kong/301/78(H7N1)
63 >A/Mallard/Sweden/105/02(H7N7) ........A..........................CT.............G.......T.....A.......T.............G.................C......T..............A.........A...............................A..........A...A....G..............A...........CT..........C..........................A........G..CT........T.......G............T.G.........A..................A.........G......................................................C...G....TC.......C..........G....A...C..C.........T.....G................G................T........G....C............A............TC..................................A.........GT.........C...A.......G.A...A...........T.C...................................A.....A....T.................A.--............ 76 65 , 71 63 63:>A/Mallard/Sweden/105/02(H7N7)
64 >A/duck/Mongolia/47/01(H7N1) AA..................................T.....................T.....A...................G.G.............C...C.....................A.....C...A..........................C...............A...A..........................C....C...........C..........................A........G..CT........T.......G.......C..A.T...........A..................A.........G...............................................................T..C................G...AA......C.................................................T........G....T.........................TC..................................A.................C..CT..A.........A...A...........T.C....A............T.................A.....A...................................... 61 54 , 60 54 64:>A/duck/Mongolia/47/01(H7N1)
65 >A/Mallard/Sweden/91/02(H7N9) ...........................T........T.....................T.....A...................G.G.........T.......C.....................A.........A.........A..........T............G........A...AC............A.................C...........C.T...............T....C...A..A.....G..CT...A....T.......G.....C......T...........A.......C.C........AA........G........................................A.........................C.......G........G....A......C..............................A...........C......T........G....T............A.......C....TC..................................A.................C..C...A...G.........A...........T.C....A..............C....A..........A.....A....T............G......--............ 79 70 , 74 68 65:>A/Mallard/Sweden/91/02(H7N9)
66 >A/Mallard/Sweden/87/02(H7N7) ...........................T........T.....................T.....A...................G.G.........T.......C.....................A.........A.......C.A..........T............G........A...AC............A.................C.....A...A.C.T...............T....C...A..A.....G..CT...A....T.......G.....C.....TT...........A.......C..........AA........G........................................A............T............C.......G...G....G....A......C...........G..............................C......T.............T............A.......C....TC...............A..................A.................C..C...A...G.....A...A...........T.C....A....T..............A..........A.....A....T............G......--............ 88 76 , 83 74 66:>A/Mallard/Sweden/87/02(H7N7)
67 >A/Mallard/Sweden/94/02(H7N7) ...........................T........T.....................T.....A...................G.G.........T.......C.....................A.........A.......C.A..........T............G........A...AC............A.................C...........C.T...............T....C...A..A.....G..CT...A....T.......G.....C.....TT...........A.......C.C........AA........G........................A...............A.........................C.......G........G....A......T..........................................C......T........G....T............A.......C....TC.............G.............C......A.................C..C...A...G.....A...A...........T.C....A..............................A.....A.................G......--............ 80 72 , 75 70 67:>A/Mallard/Sweden/94/02(H7N7)
68 >A/Mallard/Sweden/103/02(H7N7) ...........................T........T.....................T.....A....T.......A........G.........T.......C.....................A.........A.......C.A..............G........G........A...AC............A.................C...........C.T....................CT..A........G..CT........T.......G.....C.....TT...........A.......C..........AAT...T...G........................A....A....T.....A.........................C.......G........G....A......T............................A.............C......T........G....TT...........A.......C....TC..................................A.................C..C...A...G.....A...A...........T.C....A..............................A.....A.................G......--............ 82 74 , 77 72 68:>A/Mallard/Sweden/103/02(H7N7)
69 >A/Mallard/Sweden/85/02(H7N7) ...........................T........T.....................T.....A...................G.G.........T.......C.........C...........A.........A.......C.A.......................G........A...AC............AA................C...........C.T....................C...A........G..CT........T.......GA....C.....TT...........A.......C..........AA........G........................................A.........................C.......G........G....A......C..........................................C......T.............T............A.......C....TC..................................A.................C..C...A...G.....A...A...........T.C....A..............................A.....A................TG......--............ 76 67 , 71 65 69:>A/Mallard/Sweden/85/02(H7N7)
70 >A/Mallard/Sweden/92/02(H7N7) ...........................T........T.....................T.....AA..................G.G.........T.......C.........C...........A.........A.......C.A.......................G........A...AC.............A................C...........C.T...........T........C...A........G..CT........T........A....C.....TT...C.......A.......C..........AA........G........................................A.........................C.......G........G....A......C..........................................C......T........G....T............A.......C....TC..................................A.................C..C...A...G.....A...A...........T.C....A..............................A.....A.................G......--............ 76 68 , 71 66 70:>A/Mallard/Sweden/92/02(H7N7)
71 >A/Mallard/Sweden/93/02(H7N7) ...........................T........T.....................T.....A...................G.G...............T.C.........C...........A.........A.......C.A.......................G.C......A...AC............AA................C...........C.TA..............G....C...A.......TG..CT........T.......GA....C......T...........A.......C..........AA........G........................................A.........................C.......G........G....A......C..........................................C......T........G....TT...........A.......C....TC..................................A.................C..C...A.G.G.....A...A...........T.C....A..............................A.....A.........C.......G......--............ 81 73 , 76 71 71:>A/Mallard/Sweden/93/02(H7N7)
72 >A/mallard/Germany/WV38K/03(H7) AA...............A.........T.....T..T....................AT.....A.....................G.........T.......C.....................A.........A.......C........................AG........A...A......G........................C...........C.T....................C...A.......TG..CT........T.......G...C.......TT...........A.......C.........AAA..........................C......A........A...........G....................C.......G........G....A......C...........G.................................A...T........G....T..T..GG.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 290 231 , 62 56 72:>A/mallard/Germany/WV38K/03(H7)
73 >A/duck/Mongolia/736/02(H7N7) ..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....C...A.......TG..CT........T.......G...........TT...C.......A...T..............A.......T.GC................C......A..........................G..C........T..C.......G....G...G....A.G....C..A..G....G..T...............................A...T..T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 585 474 , 36 36 73:>A/duck/Mongolia/736/02(H7N7)
74 >A/duck/Mongolia/555/02(H7N7) ..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.A.......T.GC.......T........C......A........A.................G..C........T..C.......G....G...G....A.G....C..T..G....G..T...............................A...T..T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 673 544 , 26 25 74:>A/duck/Mongolia/555/02(H7N7)
75 >A/duck/Hokkaido/W182/04(H7N7) ..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..A.....T..TT...CG......A...T..............A.......T.GC................C......A.................C........G...........T..C.......G....G...G.G..A.....AC..A..G...TG..T...............................A...T..T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 633 510 , 33 33 75:>A/duck/Hokkaido/W182/04(H7N7)
76 >A/duck/Hokkaido/143/03(H7N7) ..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..A........TT...C.......A...T..............A.......T.GC................CT.....A..........................G...........T..C.......G....G..CG....A.....AC..A..G..CTG..T...............................A...T..T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 632 509 , 32 32 76:>A/duck/Hokkaido/143/03(H7N7)
77 >A/turkey/Italy/3560/99 (H7N1) ...............................A....T....................CT.....A.....................G.................C..............G......A..C.C....A................G.........................A...A...........T...T..A............C...T......AC...................T......A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 337 275 , 47 45 77:>A/turkey/Italy/3560/99 (H7N1)
78 >A/turkey/Italy/4482/1999(H7N1) .G.............................A....T....................CT.....A.....................G.................C..............G......A..C......A................G.........................A...A....G......T......A............C..........AC...................T......A........G..CT........T.......G............T...........A...............C..A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G.......T...................................T........G....T..........G.A.CG.........TC.......A..........................A..............T..C..C...A.........A...A...........T.C...................................A.....AA..................................... 75 68 , 74 68 78:>A/turkey/Italy/4482/1999(H7N1)
79 >A/turkey/Italy/1351/2001(H7N1) .G.........C...................A....T..........C.........CT.....A.....................G.A..............................G......A..C.C....A.....T..........G..............A..........A...A....G......T......A..A.........C..........AC...A...............T......A...........CT........T.G..T..G.....A......T...........A..................A.........GC...............T...........G.A.....................C..C.......T..C.....C.G..A.G...G....A......C.....G...T...T..............................A....T........G....T............A..G........GTC.....G.AT.........................A............C....C.AC...A.........A...A...........T.C...................................A.....AA............A........A............... 92 86 , 91 86 79:>A/turkey/Italy/1351/2001(H7N1)
80 >A/turkey/Italy/4426/2000(H7N1) .G.............................A....T..........C.........CT.....A.....................G....................T...........G......A..C......A................G.........................A...A....G......T...T..A............C..........AC...T...............T......A........G..CT........T.......G.....A......T...........A..................A.........GC...............T...........G.A........................C.......T..C.....C.G....G.G.G....A......C.....G.......T...................................T........G....T............A..G.........TC.......AT.........................A............C.T..C..C...A.........A...A...........T.C...................................A.....AA..................................... 80 74 , 79 74 80:>A/turkey/Italy/4426/2000(H7N1)
81 >A/turkey/Italy/3889/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......A..........................................A...A..........A.........T..........C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G.....G.T...................................T........G....T..........G.A..G.........TC..................................A............C....C..C...A.........A...A...........T.C...................................A.....A.........................-ACACTGTCTACT 80 71 , 79 70 81:>A/turkey/Italy/3889/99 (H7N1)
82 >A/turkey/Italy/2379/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......AG.............................G...........A...A..........A....................C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 330 268 , 40 38 82:>A/turkey/Italy/2379/99 (H7N1)
83 >A/turkey/Italy/1279/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......A..........................................A...A...............................C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 327 265 , 37 35 83:>A/turkey/Italy/1279/99 (H7N1)
84 >A/turkey/Italy/3283/99 (H7N1) ..........................T....A....T.....................T.....A.....................G...G.............C.....................A..C......A................G.........................A...A...............................C..........AC..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 331 269 , 41 39 84:>A/turkey/Italy/3283/99 (H7N1)
85 >A/turkey/Italy/2715/99 (H7N1) ...............................A....T.....................T.....A.....................G.........T.......C.....................A..C......A..........................................A...A...............................C..........AC...AT.....................A...........CT........T.......G............T...........A..................A.........GC...............T...........G.....G....................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 331 269 , 41 39 85:>A/turkey/Italy/2715/99 (H7N1)
86 >A/turkey/Italy/3185/1999(H7N1) .G.............................A....T.....................T.....A.....................G.........T.......C.....................A..C......A..........................................A...A...............................C..........AC...AT.....................A...........CT........T.......G............T...........A..................A.........GC...............T...........G.....G....................C.......T..C.......G....G...G....A......C.....G.......T...................................T........G....T..........G.A..G.........TC..................................A............C....C..C...A.........A...A...........T.C...................................A.....A........................A-............ 70 62 , 69 61 86:>A/turkey/Italy/3185/1999(H7N1)
87 >A/turkey/Italy/2505/99 (H7N1) ...............................A....T.....................T.....A.....................G.........T.......C.....................A..C......A..........................................A...A...............................C..........AC..........................A...........CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 328 266 , 38 36 87:>A/turkey/Italy/2505/99 (H7N1)
88 >A/turkey/Italy/1555/99 (H7N1) ...............................A....T.....................T.....A.....................G...............A.C.....................A..C......A..........................................A...A...............................C...........C..........................A...........CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.A.....G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 328 266 , 38 36 88:>A/turkey/Italy/1555/99 (H7N1)
89 >A/turkey/Italy/2716/99 (H7N1) ....C..........................A....T.....................T.....A.....................G.................C.........C...........A..C......A..........................................A...A...............................C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C...G.G...T-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 331 269 , 41 39 89:>A/turkey/Italy/2716/99 (H7N1)
90 >A/turkey/Italy/4602/99 (H7N1) .......A.......................A....T.....................T.....A.....................G.................C.....................A..C......A..........................................A...A...............................C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....AA.....C.....G.....G.T...................................T........G....T..........G.A..G.........TC..................................A............C....C..C...A.........A...A...........T.C...................................A.....A.........................-ACACTGTCTACT 81 71 , 80 70 90:>A/turkey/Italy/4602/99 (H7N1)
91 >A/turkey/Italy/5563/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......A..........................................A...A...............................C...........C..........................A........G..CT........T....T..G.....C......T...........A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....AA.....C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 330 268 , 40 38 91:>A/turkey/Italy/5563/99 (H7N1)
92 >A/turkey/Italy/2984/2000(H7N1) .G.............................A....T.....................T.....A.....................G.................C.....................A.CC......A.......Y................................G.A...A..............................GC...........C..........................A........G..CT........T.......G............T........A..A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G..C.A......C.....G.......T...A...CGGTGGG.....................T........G....T..........G.A..G.....T...TC.....G............................A............C.T..C.AC...A.........A...AT..........T.C.........T.......A.................A.....A...................GA...A............. 90 80 , 89 80 92:>A/turkey/Italy/2984/2000(H7N1)
93 >A/chicken/Italy/5093/99(H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......A........................................G.A...A..........A....A...............C...........C..........................A........G..CT........T.......G............T........A..A..................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G.......T...A...CGGTGGG.....................T........G....T..........G.A..G.........TC..................................A............C.T..C.AC...A.........A...AT..........T.C.........T.......A.................A.....A...................GA...--............ 85 76 , 80 74 93:>A/chicken/Italy/5093/99(H7N1)
94 >A/turkey/Italy/1081/99 (H7N1) ...............................A....T..C..................T.....A.....................G.................C.....................A..C......A..........................................A...A..........A....T...............C...........C..........................A........G..CT........T.......G............T...........A..................A.........GC...............T...........G.............C............C.......T..C.......G....G...G....A......CA....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 332 270 , 42 40 94:>A/turkey/Italy/1081/99 (H7N1)
95 >A/turkey/Italy/4499/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C.....................A..C......A..........................................A...A...............T...............C...........C..........................A........G..CT........T.G.....G............T.G.........A..................A.........GC...............T...........G.............C............C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 331 269 , 41 39 95:>A/turkey/Italy/4499/99 (H7N1)
96 >A/turkey/Italy/4169/1999(H7N1) AG.............................A....T.....................T.....A.....................G.................C.....................A..C......A.......C..................................A...A...............T...............C...........C..........................A........G..CT........T.......G............T...........A.T................A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G.....G.T...................................T........G....T..........G.A..G.........TC.........C........................A...........AC.T..C..C...A.........A...A...........T.C...................................A.....A.........................-ACACTGTCTACT 87 77 , 86 76 96:>A/turkey/Italy/4169/1999(H7N1)
97 >A/turkey/Italy/1083/99 (H7N1) ...............................A....T.....................T.....A.....................G.................C........................C......A..........................................A...A...............................C...........C..........................A........G..CT........T.......G............T...........A..................A.........GG...............T...........G..........................C.......T..C.......G....G...G....A......C.....G....-----------.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 327 264 , 37 34 97:>A/turkey/Italy/1083/99 (H7N1)
98 >A/turkey/Italy/472/99(H7N1) TA.............................A....T.....................T.....A.....................G.................C........................C......A..........................................A...A...............................C..........AC........................A.A........G..CT........T.......G............T...........A............A.....A.........GC...............T...........G..........................C.......T..C.......G....G...G....A......C.....G.......T...................................T........G....T......G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 277 219 , 49 44 98:>A/turkey/Italy/472/99(H7N1)
99 >A/chicken/Germany/R28/03(H7N7) TA..................................T.............G.......T.....A..........T..........G........T........C.....................G.C.......A............................A.............A...AC..............................C...........C...A........G.............A........G..CT........T.......G............T...........A..................AA.....T.GGC........................C.....................................T..C.......G........G....A......C.T................A.G..AGGGG................T....T........G....T......G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 288 230 , 60 55 99:>A/chicken/Germany/R28/03(H7N7)
100 >A/Netherlands/284/03(H7N7) ..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.------....A............C.......A.............................T..C.......G........G....A......C.T................A.G..AGGGG................T....T........G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 681 551 , 21 20 100:>A/Netherlands/284/03(H7N7)
101 >A/Netherlands/084/03(H7N7) ..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.------.................C.......A...G.........................T..C.......G........G....A......C.T................A.G..AGGGG................T....T........G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 681 551 , 21 20 101:>A/Netherlands/084/03(H7N7)
102 >A/Mallard/France/M-2525/01 (H7N1) ..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......G............T...........A.................AAA.....T..G...............................................................T.AC.......G........G....A......C....................G............................T......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 596 483 , 17 17 102:>A/Mallard/France/M-2525/01 (H7N1)
103 >A/mallard/Netherlands/12/2000(H7N3) AA.............A....................T.....................T.....A.....................G.........T.......C.........G...........A.........A..........................................A...AC..............................C...........C..........................A........G..CT........T.......G............T...........A...A..............AA........G...............................................................T..C.......G........G....A......C.................................................T........G....T............A............TC..................................A.................C..C...A...G.....A...A...........T.C...................................A.....A..........................CACTGTCTACT. 73 63 , 73 63 103:>A/mallard/Netherlands/12/2000(H7N3)
104 >A/turkey/Germany/R11/01(H7N7) TA..................................T.....................T.....A.....................G.......................................A.........A..........................................A...AC..............................C...........C...............A..........A........G..CT........T.......G............T...C.......A..................AA........G...............................................................T..C.......G........G..G.A.....AC..............................................G..T........G....T......G.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 274 214 , 46 39 104:>A/turkey/Germany/R11/01(H7N7)
105 >A/mallard/Iran/V31/04(H7) TA.................................CT.....................T.....A.....................G.................C.....................G.......A.A...A................T.........................................................C...........C..........................A........G..C................TG............TA..C..................G..T....A.........GH..............................................................T..C.......G....G...G.........................T............................................G....T.....GG.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 272 213 , 44 38 105:>A/mallard/Iran/V31/04(H7)
106 >A/chicken/England/4054/2006(H7N3) AA...........................C......T..A........................A.....................G.................C..........................................................................................................................C..........................A........G..C...............GTG...................................G.......A..........................T...........................A.....................C................G...........................................................................T............A............TC..............................C............................A................T........T.....................................A..............................--............ 39 32 , 36 30 106:>A/chicken/England/4054/2006(H7N3)
107 >A/chicken/England/4266/2006(H7N3) AA...........................C......T..A.....................T..A.....................G.................C....................................................................A.........................A...........................C..........................A........G..C...............GTG.A.................................G.......A......................................................A.....................C................G...........................................................................T............A............TC..............................C............................A................T........T.....................................A...............................-............ 43 34 , 41 33 107:>A/chicken/England/4266/2006(H7N3)
108 >A/chicken/Wales/1306/2007(H7N2) ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 0 0 , 0 0 108:>A/chicken/Wales/1306/2007(H7N2)
109 >A/mallard/Italy/4810-79/2004(H7N4) AA.................................CT..........C..........T.....A.....................G.A...............C.........C...........A.........A..............A...G...........................................................C...........C..........................A.....C..G..C.........T......TG............T.....A..................................G................T..............................................T..C.......G........G..C................................................................------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 284 225 , 36 33 109:>A/mallard/Italy/4810-79/2004(H7N4)
110 >A/mallard/Italy/4810-7/2004(H7N7) AA.................................CTT.........C..........T.....A.....................G.................C.........C...........A.........A............A.A...G...........................................................C...........C..........................AC....C..G..C................TG............T........................................G...............................................................T..C.......G........G.................................................................--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 287 225 , 36 31 110:>A/mallard/Italy/4810-7/2004(H7N7)
111 >A/goose/Italy/4692-11/2004(H7N7) AA.................................CT..........C..........T.....A.....................G.................C.........C...........A.........A..............A...G...........................................................C...........C..........................AC.......G..C................TG............T........................................G...............................................................T..C.......G........G......................................................................---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 277 217 , 34 28 111:>A/goose/Italy/4692-11/2004(H7N7)
112 >A/mallard/Italy/4234/2004(H7N7) AA......................C..........CT.....C....C................A.....................G.................C.....................A.........A........C..........................CA.....A....................T..............C...........C...................T......A........G..C................TG............T..............................A.........G.G..............................A..............................TC.CC......G........G........................................A..........----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............ 310 245 , 42 37 112:>A/mallard/Italy/4234/2004(H7N7)
113 >A/mallard/Italy/33/01(H7N3) ...................................CT...........................A.....................G.................C.....................A.........A..............................................................................C...........C..........................A........G..C................TG............T..............................A.........G......................A.........A..............................T..C.......G........G....A.................................................................G....T............A............TC..................................A.................C..C...A.........A...A...........T.....................................A...............................-............ 44 38 , 42 37 113:>A/mallard/Italy/33/01(H7N3)
114 >A/turkey/Italy/251/2003(H7N3) .G..............................T..CT...........................A.....................G.................C.....................A.........A..........................................A..............A....................C...........C..........................A..A.....G..C...........G....T...A.........T........................A....AA.........G......................A.........A.T............................T..C.......G.......CG....A.................................................................G....T............A............TC..................................A.................C..C...A.........A...A...........T.........................G...........A...............................-............ 56 49 , 54 48 114:>A/turkey/Italy/251/2003(H7N3)
115 >A/turkey/Italy/2043/2003(H7N3) .G.................................CT...............G...........A.......................................C.....................A.........A..........................................A...A..........A....................C...........C..........................A..A.....G..C................T.C.A.........T.............................AA.........G......................A.........A.T............................T..C..........A....CG....A......................................................CA.........G....T.........................T...................................A.................C..C...A.........A...A...........T.....................................A...............................-............ 53 47 , 51 46 115:>A/turkey/Italy/2043/2003(H7N3)
116 >A/quail/Italy/4610/2003(H7N2) .A.................................CT...........................A.....................G.................C.....................A..C......A..........................................A...A...............................C...........C..........................A..A.....G..C................T.C.A.........T...C.........................AA....T....G.....C...........C....A.........A.T............................T..C...............C.....A......................................................CA.........G....T...............G.........T...................................A.................C..C...A..T......A...A...........T.............................A.......A...............................-............ 59 52 , 57 51 116:>A/quail/Italy/4610/2003(H7N2)
117 >A/turkey/Italy/8000/2002(H7N3) .G.................................CT...........................A.....................G.................C.....................A.........A..........................................A...................................C...........C..........................A..A.....G..C................T.............T.............................AA.........G......................A.........A.T............................T..C.......G.......CG....A.................................................................G....T............A............TC.......A..........................A.................C..C...A.........A...A...........T.........................G...........A...............................-............ 51 45 , 49 44 117:>A/turkey/Italy/8000/2002(H7N3)
118 >A/turkey/Italy/3620/2003(H7N3) .G.................................CT.................A.........A.....................G.....A...........C.....................A.........A................G.........C...............A...............................G...C..........AC..........................A..A.....G..C................T.............T.......T......G..............AAT........G......................A.........A.T............................T..C.......G.......CG....A........................K........................................G....T............A............TC..................................A.................C..C...A.........A...A...........T.........................G...........A...............................-............ 60 54 , 58 53 118:>A/turkey/Italy/3620/2003(H7N3)
119 >A/turkey/Italy/1010/2003(H7N3) .G.................................CT.................A.........A.....................G.................C.....................A.........A..........................C...............A.....T.............................C...........C..........................A..A.....G..C................T.............T.............................AA.........G...A..................A.........A.T............................T..C.......G.......CG....A......................................................................T............A............TC..................................A.................C..C...A.........A...A...........T.........................G...........A............................................ 52 46 , 51 46 119:>A/turkey/Italy/1010/2003(H7N3)
120 >A/turkey/Italy/4608/2003(H7N3) .G.................................CT.................A.........A.....................G.................C.....................A.........A..........................C...............A...................................C..........AC..........................A..A........C................T..........C..T.............................AA.....T...G......................A.........A.T............................T..C.......G.......CG....A.................................................................G....T........C...A............TC..................................A.................C..C.............A...A...........T.........................G...........A...............................-............ 54 48 , 52 47 120:>A/turkey/Italy/4608/2003(H7N3)
121 >A/turkey/Italy/4479/2004(H7N3) .G.T...............................CT.................A..C......A.....................G.................C.....................A.........A........................................G.A.........................A.........C..........AC....G.....................A..A........C................T.C........C..T.............................AA.........G.............T........A.........A.T............................T..C.......G.......CG.G..A.............A.............................T.....................G....T........C...A............TC..................................A....T............C..C...........G.A...A...........T.........................G.C.........A...............................-............ 66 59 , 64 58 121:>A/turkey/Italy/4479/2004(H7N3)
122 >A/turkey/Italy/3337/2004(H7N3) .G.................................CT.................A..C......A............T........G.................C.....................A.........A..........................C...............A.........................A.........C..........AC..........................A..A........C................T.C........C..T.............................AA.........G.............T........A.........A.T............................T..C.......G.......CG....A.............A.............................T.....................G....T........C...A............TC..................................A....T............C..C...........G.A...A...........T.........................G.C.........A...............................-............ 63 57 , 61 56 122:>A/turkey/Italy/3337/2004(H7N3)
123 >A/turkey/Italy/3807/2004(H7N3) .G.................................CT.................A..C......A.....................G.................C.....................A.......A.A..........................C...............A.........................A.........C..........AC..........................A..A........C................T.C........C..T.............................AA.........G......................A.........A.T............................T..C.......G.......CG....A................T..........................T.....................G....T........C...A............TC..................................A....T.......C....C..C...........G.A...A...........T.........................G...........A...............................-............ 63 56 , 61 55 123:>A/turkey/Italy/3807/2004(H7N3)
---Index---------------------------------------------
-codon-position-------------------------------------- 1 2 2 1 1 11 12 1 12 2 2 2 2 1 1 1 1 12 12 2 12 2 1 12 2 1 12 2 1 1 2 1 2 2 1 1 1 2 2 12 2 1 1 1 12 1 1 12 2 1 2 1 12 21 2 22 1 1 2 12 212 12 2 2 2 2 2 1 1 12 1 2 12 1 2 1 12 1 2 2 1 1 2 12 1 2 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 2 12 12 2 1 122 12 2 12 2 1 1 1 1 2 2 12 1 1 1 12 1 2 12 1212 2 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 12 1 1 2 12 2 1 1 1 2 2 1 1 1 1 1 1 1 1 12 2 2 112 2 12 12
0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
0000000000000000000000000000000000000111111111111111111111111111111111111111111122222222222222222222222222222222222222222222222233333333333333333333333333333333333333333333344444444444444444444444444444444444444444455555555555555555555555555555555555555555555566666666666666666666666666666666666666666667777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888889999999999999999999999999999999999999999999000000000000000000000000000000111111111111111111111111111111122222222222222222222222222222222222222233333333333333333333333333333333334444444444444444444444444444444444444445555555555555555555555555555555555556666666666666666666666777777777777777777888888
1122333334444455555555666666677888999000111222233334444555566677777888888888999900000011111122222333344444455555566677777888999900000111122223333444555555666667777788888999900000111111222333344444555556667777888899900111111122222333334444455666666777777888899900000111111222233344444456666667777888899990000000111122223333344455555566667777888899900001111222233333444445555556666667777778888899990011122222333334444555556666677888888999999001112222222357777788888889999000111122234444445566777888999900011122333344444555566666777888889999900000111122223344455556667778888990001111222233344444555555666666777888990000111222233344455566666777778899990000001112222234677788000112223468899999000000
5979026790236812345789023568918147369256147013902581457036925814789012356789245812456703567901258134701346912357814703689258124701369256801460369258123479036790256814567367902589013457369123814789035792450347036926845023456924678147890356945014679013679234514701356012358167803623458910236890258147803691234568134736892358914713467902351457035625812471389256801457023692567890134570125690125814796934801247036792589124790368958123478013469251470345679192348912356892358147036925880134695847049258124703625857016923589124702369259124780136912568147803692512701390281473469281470379025815901369025789013457039258170369258457803925814703689126894703690235891450136924847806567391256313901467012345
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