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Recombination possibility - My Question to Niman in sequences lingo...

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  • #16
    Re: Recombination possibility - My Question to Niman in sequences lingo...

    Originally posted by gsgs
    also in Chile some years ago:
    H7N3 "recombined" (non-homologuous insertion) in the HA-cleavage site with a 30-nucleotides portion from its NP-gene.
    http://www.cdc.gov/ncidod/EID/vol10no4/03-0396.htm


    But for a single mutation Q226L, recombination with NP would
    probably not
    be required. We see a few such point-mutations in almost every human H5N1 isolate. And these mutations usually differ in different isolates.

    So, considering the large amount of viruses in a host, I assume
    that hundreds or thousands of single-point mutations are "tested"
    in one infection. Most will be less viable, but if Q226L were more
    viable, I think it has a good chance to evolve by "normal"
    methods.
    This may include short recombinations with NP or whatever,
    which has the effect of just one nucleotide changing.
    Random muations are rare. They are not "normal". They are largely nonsense.

    Comment

    • #17
      Re: Recombination possibility - My Question to Niman in sequences lingo...

      Here is another example

      Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus.
      Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus - PubMed
      http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=2544809&dopt=Abstract
      The haemagglutinin glycoprotein HA of influenza viruses is responsible for the attachment of the virus to neuraminic acid-containing receptors at the cell surface and subsequent penetration by triggering fusion of the viral envelope with cellular membranes. To express full activity of the newly synt …

      Nature. 1989 Jul 13;340(6229):156-7
      Khatchikian D, Orlich M, Rott R.

      Institut fur Virologie, Justus-Liebig-Universitat Giessen, FRG.

      The haemagglutinin glycoprotein HA of influenza viruses is responsible for the attachment of the virus to neuraminic acid-containing receptors at the cell surface and subsequent penetration by triggering fusion of the viral envelope with cellular membranes. To express full activity of the newly synthesized precursor, HA has to be modified by post-translational proteolytic cleavage into the polypeptides HA1 and HA2 by cellular enzymes. If proteases suitable for cleavage are not present in the host cell, the resulting virus particles are non-infectious. During adaptation of the apathogenic influenza virus A/turkey/Oregon/71 to chicken embryo cells, which are not permissive for HA cleavage, we obtained an infectious virus variant with increased pathogenicity. Sequence analysis revealed that during adaptation 54 nucleotides were inserted into the HA gene; their sequence corresponds to a region of the 28S ribosomal RNA (= Host RNA). This insertion is probably responsible for increased cleavability of HA, as well as for infectivity and pathogenicity of the adapted virus.

      PMID: 2544809 [PubMed - indexed for MEDLINE]

      Comment

      • #18
        Re: Recombination possibility - My Question to Niman in sequences lingo...

        My My, Ganseerpeel you find an outstanding example. In this case the recombination came from the host ribosomal RNA. Nature is full of resources.

        You whant something else...

        This week while I wasw occuied with PRRSv sequencing ( swine virus ) I had the Idea to probe some of their polymorphism into los alamos flu data bank just to see.

        Most of the time the polymorphism did not find matchs with influenza, but when a match was done most of the time it was a travel log including many swines sequences... and only of north american or asiatic sequences ... the north american type of PRRSV is not present in europe.

        In the diagnostic routine, it is not rare to see PRRSV & SIV positives swines. Both of theses virus are RNA virus.

        Are theses inter-virus recombination frequent ?

        Comment

        • #19
          Re: Recombination possibility - My Question to Niman in sequences lingo...

          is there a database of PRRSV viruses, so we can test it ?
          I'm interested in expert panflu damage estimates
          my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

          Comment

          • #20
            Re: Recombination possibility - My Question to Niman in sequences lingo...

            Originally posted by Mingus
            My My, Ganseerpeel you find an outstanding example. In this case the recombination came from the host ribosomal RNA. Nature is full of resources.

            You whant something else...

            This week while I wasw occuied with PRRSv sequencing ( swine virus ) I had the Idea to probe some of their polymorphism into los alamos flu data bank just to see.

            Most of the time the polymorphism did not find matchs with influenza, but when a match was done most of the time it was a travel log including many swines sequences... and only of north american or asiatic sequences ... the north american type of PRRSV is not present in europe.

            In the diagnostic routine, it is not rare to see PRRSV & SIV positives swines. Both of theses virus are RNA virus.

            Are theses inter-virus recombination frequent ?
            I had previously noted a 18 BP region of identity between flu and Ebola

            http://www.recombinomics.com/News/07...uan_Ebola.html

            What made the observation more intersting was the fact that all of the flu matches were H5, and the match was in the envelope gene of both viruses.

            The exact match was between Zaire, 1976 and European versions of H5. A little sequence homology goes a long way

            Comment

            • #21
              Re: Recombination possibility - My Question to Niman in sequences lingo...

              Ebola is rare, where I live, but what about Rhinoviruses ?
              They are very common.
              How many segements ? Are sequences available ?
              Can H5N1 combine with Rhinoviruses (or other cold-viruses)
              to improve H2H transmissiability ?
              I'm interested in expert panflu damage estimates
              my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

              Comment

              • #22
                Re: Recombination possibility - My Question to Niman in sequences lingo...

                Originally posted by gsgs
                Ebola is rare, where I live, but what about Rhinoviruses ?
                They are very common.
                How many segements ? Are sequences available ?
                Can H5N1 combine with Rhinoviruses (or other cold-viruses)
                to improve H2H transmissiability ?
                The is much more homology between avian and seasonal flu than other viruses. It's HOMOLOGOPUS recombination (remember the landing zones), and avian flu frequently acquires mammalian polymorphism from swine or human flu, including influenza B.

                Comment

                • #23
                  Re: Recombination possibility - My Question to Niman in sequences lingo...

                  this thread is about non-homologuous recombination however,
                  and apparantly it does also occur.
                  And double infection with a cold is much more likely.
                  I'd like to see the sequences of one cold-virus, where can I find it ?
                  Also PRRSV.
                  I'm interested in expert panflu damage estimates
                  my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                  Comment

                  • #24
                    Re: Recombination possibility - My Question to Niman in sequences lingo...

                    Ok I will post some examples of at least 10nucleotide match with wild north american PRRS virus sequences we have here in our private PRRSv sequences bank.
                    The sequences legally owned to the veterinary who pay for them so I won't post them.
                    Just the polymorphisms are ok.

                    Note that PRRSv is a swine virus and is not know to infect others species.

                    CGATATGCG

                    <TABLE cellSpacing=0 cellPadding=3 width="100%" align=left border=0><TBODY><TR><TD vAlign=top width="100%" colSpan=2><TABLE class=resultstable cellSpacing=0 cellPadding=4 width="100%" border=0><TBODY><TR class=navbox bgColor=#5879db><TD class=navboxrow>Accession </TD><TD class=navboxrow>Strain</TD><TD class=navboxrow>Seg</TD><TD class=navboxrow>Length</TD><TD class=navboxrow>Year</TD><TD class=navboxrow>Serotype</TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208276 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ923513 </TD><TD>A/swine/Korea/CN22/2006 </TD><TD>NP (5) </TD><TD>1498 </TD><TD>2006 </TD><TD>H3N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208275 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ923512 </TD><TD>A/swine/Korea/PZ72-1/2006 </TD><TD>NP (5) </TD><TD>1498 </TD><TD>2006 </TD><TD>H3N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185342 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469959 </TD><TD>A/Ontario/RV1273/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185350 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469967 </TD><TD>A/swine/Alberta/14722/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185358 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469975 </TD><TD>A/swine/British Columbia/28103/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185366 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469983 </TD><TD>A/swine/Manitoba/12707/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185374 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469991 </TD><TD>A/swine/Ontario/33853/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=185382 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ469999 </TD><TD>A/turkey/Ontario/31232/2005 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2005 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140988 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ150434 </TD><TD>A/SW/IN/PU542/04 </TD><TD>NP (5) </TD><TD>1568 </TD><TD>2004 </TD><TD>H3N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140980 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ150426 </TD><TD>A/SW/MI/PU243/04 </TD><TD>NP (5) </TD><TD>1568 </TD><TD>2004 </TD><TD>H3N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140680 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ145541 </TD><TD>A/swine/Minnesota/00395/2004 </TD><TD>NP (5) </TD><TD>1487 </TD><TD>2004 </TD><TD>H3N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=137795 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ335774 </TD><TD>A/turkey/Ohio/313053/04 </TD><TD>NP (5) </TD><TD>1497 </TD><TD>2004 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=20287 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY129159 </TD><TD>A/Swine/Korea/CY02/02 </TD><TD>NP (5) </TD><TD>1542 </TD><TD>2002 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=14255 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF455701 </TD><TD>A/Swine/North Carolina/93523/01 </TD><TD>NP (5) </TD><TD>1515 </TD><TD>2001 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=14253 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF455699 </TD><TD>A/Swine/Ohio/891/01 </TD><TD>NP (5) </TD><TD>1497 </TD><TD>2001 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=25239 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF342819 </TD><TD>A/Wisconsin/10/98 </TD><TD>NP (5) </TD><TD>1512 </TD><TD>1998 </TD><TD>H1N1 </TD><TD></TD></TR></TBODY></TABLE></TD></TR><TR><TD colSpan=2>
                    </TD></TR></TBODY></TABLE>

                    Comment

                    • #25
                      Re: Recombination possibility - My Question to Niman in sequences lingo...

                      Are the matches limited to 10 BP, or is there additional identity?

                      Comment

                      • #26
                        Re: Recombination possibility - My Question to Niman in sequences lingo...

                        Originally posted by gsgs
                        this thread is about non-homologuous recombination however,
                        and apparantly it does also occur.
                        And double infection with a cold is much more likely.
                        I'd like to see the sequences of one cold-virus, where can I find it ?
                        Also PRRSV.
                        Probes identify HOMOLOGOUS recombination.

                        Comment

                        • #27
                          Re: Recombination possibility - My Question to Niman in sequences lingo...

                          <TABLE class=resultstable cellSpacing=0 cellPadding=4 width="100%" border=0><TBODY><TR class=navbox bgColor=#5879db><TD class=navboxrow>Accession </TD><TD class=navboxrow>Strain</TD><TD class=navboxrow>Seg</TD><TD class=navboxrow>Length</TD><TD class=navboxrow>Year</TD><TD class=navboxrow>Serotype</TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187087 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376868 </TD><TD>A/chicken/Taiwan/0204/05 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2005 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187088 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376869 </TD><TD>A/chicken/Taiwan/A342/05 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2005 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=214957 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ997330 </TD><TD>A/chicken/Jilin/hl/2004 </TD><TD>PB1 (2) </TD><TD>2339 </TD><TD>2004 </TD><TD>H5N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187083 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376864 </TD><TD>A/chicken/Taiwan/0305/04 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2004 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187084 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376865 </TD><TD>A/chicken/Taiwan/ch1006/04 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2004 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=139913 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ465398 </TD><TD>A/duck/Hubei/W1/2004 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2004 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69184 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664775 </TD><TD>A/chicken/Hong Kong/AP45/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69185 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664776 </TD><TD>A/chicken/Hong Kong/BD90/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69183 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664774 </TD><TD>A/chicken/Hong Kong/CSW153/03 </TD><TD>PB1 (2) </TD><TD>1217 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69186 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664777 </TD><TD>A/chicken/Hong Kong/CSW291/03 </TD><TD>PB1 (2) </TD><TD>1217 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69187 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664778 </TD><TD>A/chicken/Hong Kong/CSW304/03 </TD><TD>PB1 (2) </TD><TD>1217 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69188 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664779 </TD><TD>A/chicken/Hong Kong/FY23/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69199 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664790 </TD><TD>A/chicken/Hong Kong/NT366/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69191 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664782 </TD><TD>A/chicken/Hong Kong/SF1/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69192 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664783 </TD><TD>A/chicken/Hong Kong/SSP101/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69193 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664784 </TD><TD>A/chicken/Hong Kong/TP38/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69198 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664789 </TD><TD>A/chicken/Hong Kong/WF120/03 </TD><TD>PB1 (2) </TD><TD>1207 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69194 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664785 </TD><TD>A/chicken/Hong Kong/WF126/03 </TD><TD>PB1 (2) </TD><TD>1217 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69200 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664791 </TD><TD>A/chicken/Hong Kong/YU427/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132680 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226170 </TD><TD>A/Ck/Hong Kong/CSW161/2003 </TD><TD>PB1 (2) </TD><TD>1473 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132675 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226165 </TD><TD>A/Ck/Hong Kong/WF126/2003 </TD><TD>PB1 (2) </TD><TD>1470 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132677 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226167 </TD><TD>A/Ck/Hong Kong/YU463/2003 </TD><TD>PB1 (2) </TD><TD>1470 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132678 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226168 </TD><TD>A/Ck/Hong Kong/YU577/2003 </TD><TD>PB1 (2) </TD><TD>1470 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187081 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376862 </TD><TD>A/duck/Taiwan/A68/03 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2003 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132681 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226171 </TD><TD>A/Gf/Hong Kong/NT101/2003 </TD><TD>PB1 (2) </TD><TD>1473 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69189 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664780 </TD><TD>A/guineafowl/Hong Kong/NT101/03 </TD><TD>PB1 (2) </TD><TD>1218 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69196 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY664787 </TD><TD>A/pheasant/Hong Kong/WF54/03 </TD><TD>PB1 (2) </TD><TD>1217 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=132679 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ226169 </TD><TD>A/SCk/Hong Kong/YU663/2003 </TD><TD>PB1 (2) </TD><TD>1473 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128624 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064519 </TD><TD>A/chicken/Guangdong/21/02 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2002 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=184447 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY724261 </TD><TD>A/chicken/Hebei/1/2002 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2002 </TD><TD>H7N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128636 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064531 </TD><TD>A/chicken/Henan/43/02 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2002 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=210506 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ997297 </TD><TD>A/chicken/Jilin/he/2002 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2002 </TD><TD>H5N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=212416 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ997382 </TD><TD>A/chicken/Jilin/hf/2002 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2002 </TD><TD>H5N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187072 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376853 </TD><TD>A/chicken/Taiwan/PF3/02 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2002 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128626 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064521 </TD><TD>A/chicken/Guangdong/47/01 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2001 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=187065 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ376846 </TD><TD>A/chicken/Taiwan/0329/01 </TD><TD>PB1 (2) </TD><TD>2340 </TD><TD>2001 </TD><TD>H6N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=118390 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY684878 </TD><TD>A/black-headed gull/Netherlands/1/00 </TD><TD>PB1 (2) </TD><TD>2287 </TD><TD>2000 </TD><TD>H13N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140767 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ485206 </TD><TD>A/chicken/China/Guangxi1/2000 </TD><TD>PB1 (2) </TD><TD>2321 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140775 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ485214 </TD><TD>A/chicken/China/Guangxi14/2000 </TD><TD>PB1 (2) </TD><TD>2321 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=140783 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ485222 </TD><TD>A/chicken/China/Guangxi17/2000 </TD><TD>PB1 (2) </TD><TD>2321 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128623 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064518 </TD><TD>A/chicken/Guangdong/10/00 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40161 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508628 </TD><TD>A/Chicken/Guangdong/10/00 </TD><TD>PB1 (2) </TD><TD>2259 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128625 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064520 </TD><TD>A/chicken/Guangdong/4/00 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40165 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508632 </TD><TD>A/Chicken/Henan/62/00 </TD><TD>PB1 (2) </TD><TD>2274 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128639 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064534 </TD><TD>A/chicken/Jiangsu/1/00 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=33239 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF523427 </TD><TD>A/Duck/Shantou/830/00 </TD><TD>PB1 (2) </TD><TD>1512 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135570 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005511 </TD><TD>A/Pigeon/Nanchang/2-0461/2000 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135563 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005505 </TD><TD>A/Quail/Nanchang/2-0460/2000 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135578 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005517 </TD><TD>A/Wild Duck/Nanchang/2-0480/2000 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=118391 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY684879 </TD><TD>A/black-headed gull/Sweden/1/99 </TD><TD>PB1 (2) </TD><TD>2275 </TD><TD>1999 </TD><TD>H13N6 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=118392 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY684880 </TD><TD>A/black-headed gull/Sweden/2/99 </TD><TD>PB1 (2) </TD><TD>2274 </TD><TD>1999 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=118393 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY684881 </TD><TD>A/black-headed gull/Sweden/5/99 </TD><TD>PB1 (2) </TD><TD>2274 </TD><TD>1999 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12192 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222637 </TD><TD>A/Chicken/Hong Kong/FY20/99 </TD><TD>PB1 (2) </TD><TD>1362 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12191 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222638 </TD><TD>A/Chicken/Hong Kong/KC12/99 </TD><TD>PB1 (2) </TD><TD>1362 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40156 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508623 </TD><TD>A/Chicken/Iran/11T/99 </TD><TD>PB1 (2) </TD><TD>2186 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12190 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222639 </TD><TD>A/Quail/Hong Kong/NT28/99 </TD><TD>PB1 (2) </TD><TD>1362 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12188 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222641 </TD><TD>A/Silky Chicken/Hong Kong/SF44/99 </TD><TD>PB1 (2) </TD><TD>1362 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128647 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064542 </TD><TD>A/chicken/Beijing/8/98 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40160 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508627 </TD><TD>A/Chicken/Beijing/8/98 </TD><TD>PB1 (2) </TD><TD>2274 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40163 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508630 </TD><TD>A/Chicken/Hebei/4/98 </TD><TD>PB1 (2) </TD><TD>2274 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128637 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064532 </TD><TD>A/chicken/Henan/5/98 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=134496 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY004513 </TD><TD>A/mallard/Alberta/201/1998 </TD><TD>PB1 (2) </TD><TD>2341 </TD><TD>1998 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=13132 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF400787 </TD><TD>A/Swine/Hong Kong/3297/98 </TD><TD>PB1 (2) </TD><TD>543 </TD><TD>1998 </TD><TD>H9N2 </TD></TR></TBODY></TABLE>

                          Comment

                          • #28
                            Re: Recombination possibility - My Question to Niman in sequences lingo...

                            <TABLE class=resultstable cellSpacing=0 cellPadding=4 width="100%" border=0><TBODY><TR class=navbox bgColor=#5879db><TD class=navboxrow>Accession </TD><TD class=navboxrow>Strain</TD><TD class=navboxrow>Seg</TD><TD class=navboxrow>Length</TD><TD class=navboxrow>Year</TD><TD class=navboxrow>Serotype</TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=209220 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY015497 </TD><TD>A/mallard/Alaska/256/2005 </TD><TD>PA (3) </TD><TD>2197 </TD><TD>2005 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=186807 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY012845 </TD><TD>A/pintail/Alaska/20/2005 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2005 </TD><TD>H12N5 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=204723 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY013268 </TD><TD>A/pintail/Alaska/53/2005 </TD><TD>PA (3) </TD><TD>2227 </TD><TD>2005 </TD><TD>H3N6 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208997 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY015011 </TD><TD>A/Canada/rv504/2004 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=53725 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY616764 </TD><TD>A/chicken/British Columbia/04 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=67988 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY646083 </TD><TD>A/chicken/British Columbia/GSC_human_B/04 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208989 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY015003 </TD><TD>A/environment/Canada/av41/2004 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=64673 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY650275 </TD><TD>A/GSC_chicken/British Columbia/04 </TD><TD>PA (3) </TD><TD>2230 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=64726 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY648292 </TD><TD>A/GSC_chicken_B/British Columbia/04 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2004 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=88924 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY790310 </TD><TD>A/swine/Korea/S452/2004 </TD><TD>PA (3) </TD><TD>2220 </TD><TD>2004 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=88875 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY800238 </TD><TD>A/chicken/Korea/S1/2003 </TD><TD>PA (3) </TD><TD>2231 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111322 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862681 </TD><TD>A/chicken/Korea/S12/03 </TD><TD>PA (3) </TD><TD>1215 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111326 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862685 </TD><TD>A/chicken/Korea/S16/03 </TD><TD>PA (3) </TD><TD>1212 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111327 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862686 </TD><TD>A/chicken/Korea/S18/03 </TD><TD>PA (3) </TD><TD>1205 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111320 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862679 </TD><TD>A/chicken/Korea/S4/03 </TD><TD>PA (3) </TD><TD>661 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111321 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862680 </TD><TD>A/chicken/Korea/S5/03 </TD><TD>PA (3) </TD><TD>2191 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111324 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862683 </TD><TD>A/dove/Korea/S14/03 </TD><TD>PA (3) </TD><TD>1215 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=111323 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY862682 </TD><TD>A/duck/Korea/S13/03 </TD><TD>PA (3) </TD><TD>1215 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=134319 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY004343 </TD><TD>A/pintail/Alberta/49/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H12N5 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135208 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005171 </TD><TD>A/shorebird/Delaware/231/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H9N4 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135386 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005335 </TD><TD>A/shorebird/Delaware/236/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H11N9 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135214 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005176 </TD><TD>A/shorebird/Delaware/261/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H9N5 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135218 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005180 </TD><TD>A/shorebird/Delaware/286/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=135205 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005168 </TD><TD>A/shorebird/Delaware/68/2003 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2003 </TD><TD>H9N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123424 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716225 </TD><TD>B/Bangkok/460/03 </TD><TD>PA (3) </TD><TD>2149 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123412 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716213 </TD><TD>B/Barcelona/215/03 </TD><TD>PA (3) </TD><TD>2132 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123417 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716218 </TD><TD>B/Bucharest/795/03 </TD><TD>PA (3) </TD><TD>2136 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123422 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716223 </TD><TD>B/Cheju/303/03 </TD><TD>PA (3) </TD><TD>2165 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123413 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716214 </TD><TD>B/Geneva/5079/03 </TD><TD>PA (3) </TD><TD>2150 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123411 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716212 </TD><TD>B/Israel/95/03 </TD><TD>PA (3) </TD><TD>2144 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123425 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716226 </TD><TD>B/Jiangsu/10/03 </TD><TD>PA (3) </TD><TD>2153 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=80928 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY582045 </TD><TD>B/Memphis/13/03 </TD><TD>PA (3) </TD><TD>2181 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123410 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716211 </TD><TD>B/Moscow/3/03 </TD><TD>PA (3) </TD><TD>2167 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123420 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716221 </TD><TD>B/Shanghai/361/03 </TD><TD>PA (3) </TD><TD>2172 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=64880 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB120465 </TD><TD>B/Yamagata/115/2003 </TD><TD>PA (3) </TD><TD>459 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=64881 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB120466 </TD><TD>B/Yamagata/1246/2003 </TD><TD>PA (3) </TD><TD>459 </TD><TD>2003 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=212473 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ997535 </TD><TD>A/duck/Shanghai/xj/2002 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2002 </TD><TD>H5N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=212103 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY016616 </TD><TD>A/mallard/Maryland/789/2002 </TD><TD>PA (3) </TD><TD>2216 </TD><TD>2002 </TD><TD>H5N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69493 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY363507 </TD><TD>A/swine/Hong Kong/1144/02 </TD><TD>PA (3) </TD><TD>1535 </TD><TD>2002 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69494 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY363508 </TD><TD>A/swine/Hong Kong/1197/02 </TD><TD>PA (3) </TD><TD>1535 </TD><TD>2002 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123409 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716210 </TD><TD>B/Hong Kong/330/02 </TD><TD>PA (3) </TD><TD>2172 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=80927 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY582044 </TD><TD>B/Los Angeles/1/02 </TD><TD>PA (3) </TD><TD>2181 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123406 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716207 </TD><TD>B/Tehran/80/02 </TD><TD>PA (3) </TD><TD>2159 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123415 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716216 </TD><TD>B/Trento/3/02 </TD><TD>PA (3) </TD><TD>2141 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=123408 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ716209 </TD><TD>B/Trieste/28/02 </TD><TD>PA (3) </TD><TD>2163 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=64879 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB120464 </TD><TD>B/Yamagata/222/2002 </TD><TD>PA (3) </TD><TD>459 </TD><TD>2002 </TD><TD> </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=128617 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ064513 </TD><TD>A/chicken/Shanghai/10/01 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=62097 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY422014 </TD><TD>A/duck/Hokkaido/107/01 </TD><TD>HA (4) </TD><TD>1040 </TD><TD>2001 </TD><TD>H2N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=62098 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY422015 </TD><TD>A/duck/Hokkaido/17/01 </TD><TD>HA (4) </TD><TD>1040 </TD><TD>2001 </TD><TD>H2N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=62099 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY422016 </TD><TD>A/duck/Hokkaido/86/01 </TD><TD>HA (4) </TD><TD>1040 </TD><TD>2001 </TD><TD>H2N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=62100 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY422017 </TD><TD>A/duck/Hokkaido/95/01 </TD><TD>HA (4) </TD><TD>1040 </TD><TD>2001 </TD><TD>H2N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=212645 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB276115 </TD><TD>A/duck/Hokkaido/95/01 </TD><TD>HA (4) </TD><TD>1739 </TD><TD>2001 </TD><TD>H2N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=134697 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY004707 </TD><TD>A/mallard/Alberta/156/2001 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=184879 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ017508 </TD><TD>A/mallard/Alberta/24/01 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=184883 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ017512 </TD><TD>A/mallard/Alberta/24/01 (quail-adapted) </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H7N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=134957 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY004944 </TD><TD>A/mallard/Alberta/30/2001 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H4N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208582 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY014589 </TD><TD>A/mallard/Alberta/34/2001 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2001 </TD><TD>H7N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=69492 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY363506 </TD><TD>A/swine/Hong Kong/9745/01 </TD><TD>PA (3) </TD><TD>1535 </TD><TD>2001 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=137367 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY009377 </TD><TD>A/swine/Spain/33601/2001 </TD><TD>PA (3) </TD><TD>2205 </TD><TD>2001 </TD><TD>H3N2 </TD></TR></TBODY></TABLE>

                            Comment

                            • #29
                              Re: Recombination possibility - My Question to Niman in sequences lingo...

                              <TABLE class=resultstable cellSpacing=0 cellPadding=4 width="100%" border=0><TBODY><TR class=navbox bgColor=#5879db><TD class=navboxrow style="FONT-SIZE: 90%"></TD><TD class=navboxrow>Accession </TD><TD class=navboxrow>Strain</TD><TD class=navboxrow>Seg</TD><TD class=navboxrow>Length</TD><TD class=navboxrow>Year</TD><TD class=navboxrow>Serotype</TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=215370 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ374399 </TD><TD>A/duck/IT/701/2005 </TD><TD>HA (4) </TD><TD>489 </TD><TD>2005 </TD><TD>H10N7 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127777 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124153 </TD><TD>A/canine/Florida/43/2004 </TD><TD>NS (8) </TD><TD>838 </TD><TD>2004 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127779 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124161 </TD><TD>A/canine/Florida/242/2003 </TD><TD>NS (8) </TD><TD>838 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127781 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124170 </TD><TD>A/equine/Massachussetts/213/2003 </TD><TD>NS (8) </TD><TD>860 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127783 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124186 </TD><TD>A/equine/Ohio/1/2003 </TD><TD>NS (8) </TD><TD>819 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=129670 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ222917 </TD><TD>A/equine/Wisconsin/1/03 </TD><TD>NS (8) </TD><TD>838 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=119701 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY855345 </TD><TD>A/equine/Kentucky/5/02 </TD><TD>NS (8) </TD><TD>890 </TD><TD>2002 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127782 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124185 </TD><TD>A/equine/Kentucky/5/2002 </TD><TD>NS (8) </TD><TD>864 </TD><TD>2002 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81018 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785755 </TD><TD>A/chicken/Iran/261/01 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>2001 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81019 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785756 </TD><TD>A/chicken/Iran/675/01 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>2001 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=65205 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY651596 </TD><TD>A/Dk/ST/5048/2001 </TD><TD>NS (8) </TD><TD>863 </TD><TD>2001 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81017 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785754 </TD><TD>A/chicken/Iran/327/2000 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>2000 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=215319 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY016568 </TD><TD>A/New South Wales/30/2000 </TD><TD>PA (3) </TD><TD>2206 </TD><TD>2000 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=118403 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY684891 </TD><TD>A/black-headed gull/Sweden/5/99 </TD><TD>HA (4) </TD><TD>1760 </TD><TD>1999 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12175 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222654 </TD><TD>A/Chicken/Hong Kong/NT16/99 </TD><TD>NA (6) </TD><TD>1412 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40112 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508579 </TD><TD>A/Chicken/Iran/11T/99 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81016 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785753 </TD><TD>A/chicken/Iran/496/99 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81020 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785757 </TD><TD>A/chicken/Iran/738/99 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12230 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ291393 </TD><TD>A/Chicken/Pakistan/2/99 </TD><TD>NA (6) </TD><TD>1415 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40109 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508576 </TD><TD>A/Chicken/Pakistan/4/99 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40110 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508577 </TD><TD>A/Chicken/Pakistan/5/99 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=40113 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF508580 </TD><TD>A/Chicken/Saudi Arabia/532/99 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=7340 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ404629 </TD><TD>A/Hong Kong/1073/99 </TD><TD>NA (6) </TD><TD>1418 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=7338 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ404628 </TD><TD>A/Hong Kong/1074/99 </TD><TD>NA (6) </TD><TD>1418 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12173 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222656 </TD><TD>A/Pheasant/Hong Kong/SSP11/99 </TD><TD>NA (6) </TD><TD>1412 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12176 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222653 </TD><TD>A/Pigeon/Hong Kong/FY6/99 </TD><TD>NA (6) </TD><TD>1412 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12177 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222652 </TD><TD>A/Quail/Hong Kong/A17/99 </TD><TD>NA (6) </TD><TD>1412 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12174 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF222655 </TD><TD>A/Quail/Hong Kong/SSP10/99 </TD><TD>NA (6) </TD><TD>1412 </TD><TD>1999 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=81015 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY785752 </TD><TD>A/chicken/Iran/430/98 </TD><TD>NA (6) </TD><TD>1406 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12343 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB049164 </TD><TD>A/parakeet/Narita/92A/98 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1998 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=12344 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AB049163 </TD><TD>A/parakeet/Chiba/1/97 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1997 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=1686 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF156396 </TD><TD>A/Quail/Hong Kong/G1/97 </TD><TD>NA (6) </TD><TD>1387 </TD><TD>1997 </TD><TD>H9N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=184502 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY011422 </TD><TD>A/New York/571/1996 </TD><TD>PB1 (2) </TD><TD>2309 </TD><TD>1996 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=138972 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY010026 </TD><TD>A/New York/582/1996 </TD><TD>PB1 (2) </TD><TD>2309 </TD><TD>1996 </TD><TD>H3N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=2076 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>D29659 </TD><TD>A/Swine/Nagasaki/1/90 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1990 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=2074 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>D29658 </TD><TD>A/Swine/Nagasaki/1/89 </TD><TD>NA (6) </TD><TD>1410 </TD><TD>1989 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=134545 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY005933 </TD><TD>A/herring gull/Delaware/712/1988 </TD><TD>HA (4) </TD><TD>1758 </TD><TD>1988 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=208591 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY014599 </TD><TD>A/shorebird/New Jersey/840/1986 </TD><TD>HA (4) </TD><TD>1758 </TD><TD>1986 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=1949 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>D00713 </TD><TD>A/Swine/Ehime/1/80 </TD><TD>NA (6) </TD><TD>1467 </TD><TD>1980 </TD><TD>H1N2 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=59 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF001663 </TD><TD>A/Equine/Newmarket/1/77 </TD><TD>NS (8) </TD><TD>838 </TD><TD>1977 </TD><TD>H7N7 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=209141 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY015160 </TD><TD>A/black-legged kittywake/Alaska/295/1975 </TD><TD>HA (4) </TD><TD>1758 </TD><TD>1975 </TD><TD>H16N3 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=138593 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY009458 </TD><TD>A/Weiss/43 </TD><TD>PB1 (2) </TD><TD>2301 </TD><TD>1943 </TD><TD>H1N1 </TD><TD></TD></TR></TBODY></TABLE>

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                              • #30
                                Re: Recombination possibility - My Question to Niman in sequences lingo...

                                <TABLE class=resultstable cellSpacing=0 cellPadding=4 width="100%" border=0><TBODY><TR class=navbox bgColor=#5879db><TD class=navboxrow style="FONT-SIZE: 90%"> </TD><TD class=navboxrow>Accession </TD><TD class=navboxrow>Strain</TD><TD class=navboxrow>Seg</TD><TD class=navboxrow>Length</TD><TD class=navboxrow>Year</TD><TD class=navboxrow>Serotype</TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=204994 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY013561 </TD><TD>A/Wellington/10/2005 </TD><TD>NS (8) </TD><TD>850 </TD><TD>2005 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=207782 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY014011 </TD><TD>A/Wellington/11/2005 </TD><TD>NS (8) </TD><TD>853 </TD><TD>2005 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=205002 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY013569 </TD><TD>A/Wellington/12/2005 </TD><TD>NS (8) </TD><TD>853 </TD><TD>2005 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=205026 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY013593 </TD><TD>A/Wellington/13/2005 </TD><TD>NS (8) </TD><TD>853 </TD><TD>2005 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=209307 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>CY015584 </TD><TD>A/Wellington/14/2005 </TD><TD>NS (8) </TD><TD>850 </TD><TD>2005 </TD><TD>H1N1 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127773 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124149 </TD><TD>A/canine/Florida/43/2004 </TD><TD>PA (3) </TD><TD>2151 </TD><TD>2004 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127768 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124156 </TD><TD>A/canine/Florida/242/2003 </TD><TD>PA (3) </TD><TD>2151 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=127743 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ124187 </TD><TD>A/equine/Ohio/1/2003 </TD><TD>PA (3) </TD><TD>2123 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=129671 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>DQ222918 </TD><TD>A/equine/Wisconsin/1/03 </TD><TD>PA (3) </TD><TD>2151 </TD><TD>2003 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=119696 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AY855340 </TD><TD>A/equine/Kentucky/5/02 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>2002 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=68679 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>ISDN68679 </TD><TD>A/Duck/Viet Nam/14/2001 </TD><TD>HA (4) </TD><TD>1290 </TD><TD>2001 </TD><TD>H4N6 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=11291 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AF310986 </TD><TD>A/Duck/Taiwan/g9/89 </TD><TD>HA (4) </TD><TD>1121 </TD><TD>1989 </TD><TD>H11 </TD><TD></TD></TR><TR bgColor=#a7c4ef><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=3475 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>M26082 </TD><TD>A/Equine/Tennessee/5/86 </TD><TD>PA (3) </TD><TD>2233 </TD><TD>1986 </TD><TD>H3N8 </TD><TD></TD></TR><TR bgColor=white><TD align=left><INPUT onclick=setAll(this.checked) type=checkbox value=14953 name=checkbox> </TD><TD class=displaytablerow align=left></TD><TD>AJ252132 </TD><TD>A/swine/Potsdam/35/82 </TD><TD>HA (4) </TD><TD>1740 </TD><TD>1982 </TD><TD>H3N2 </TD></TR></TBODY></TABLE>

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