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Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

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  • #76
    Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

    Originally posted by gsgs View Post
    I wouldn't rely too much on that p-value.
    They would have commented something, if they thought
    recombination in NA were likely.
    From the abstract (which summarize the main points) of the paper:

    Using an exhaustive search and a nonparametric<SUP> </SUP>test for mosaic structure, we identified 315 sequences (2%)<SUP> </SUP>in five different RNA segments that, after a multiple comparisons<SUP> </SUP>correction, had statistically significant mosaic signals compatible<SUP> </SUP>with homologous recombination.

    Comment

    • #77
      Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

      Originally posted by gsgs View Post
      . The 1918-?-recombination is being much disputed.
      By the groups that can't find recombination.

      1918 was obvious recombination between swine and human H1N1.

      Although these groups know that 1918 had nothing to do with reassortment, they still have major issues with recombination. The relationship between WSN/33 (human H1N1 from 1933) and swine/Iowa/15/31 (swine H1N1 from 1931) and the 1918 pandemic strain is the same accross all 8 gene segments. This is NOT an accident or coincidence

      Recombinomics Presentations
      http://www.recombinomics.com/presentations.html
      Recombinomics Presentations


      1918 Pandemic Evolution Via Recombination Between Human and Swine H1N1
      Niman HL
      Recombinomics, Inc., Pittsburgh, Pennsylvania, USA

      Although complete sequences of all eight gene segments of the 1918 pandemic strain of H1N1 have been published, the origin and evolution of the strain remain unclear. 10 polymorphisms in the four internal genes distinguished the 1918 strain from avian isolates, but pandemic polymorphisms match both human and swine H1N1 sequences. Similarly, phylogenetic analysis indicates the pandemic strain is most closely related to human and swine H1N1 from the early 1930’s. Recent H1N1 and H1N2 sequences from swine in Canada demonstrate absolute fidelity with extended regions of PA and PB2 from 1977 swine isolates from 1977, as well as regions of PA identity with a swine isolate from 1931. These identities strongly suggested that the swine evolution was via recombination and support use of polymorphism tracing to determine parental strains.

      Although human and swine sequences from isolates collected prior to the 1918 pandemic are not available, full sequences have been generated on human and swine H1N1 isolates from the 1930’s. Representative human, A/WSN/33, or swine, A/swine/Iowa/15/30 or A/swine/Iowa/1976/31, contain over 90&#37; of the polymorphisms in six of the eight gene segments of A/Brevig Mission/1/1918 or A/South Carolina/1/18. The matches in the remaining two genes, NA and NP, are 84% and 86%, respectively. In six of the eight genes, the percentage of human polymorphisms are higher than the swine polymorphisms, PB2(51/40), PB1(55/40), PA(52/39), HA(53/49), MP(52/40), NS(55/41) while the swine polymorphisms are greater in the remaining two gene segments, NP(42/47) and NA(34/51). Moreover, although the matching regions alternate, the regions are defined by clustered polymorphisms. These acquisition patterns provide additional support for generation of the pandemic strain via recombination between human and swine H1N1.

      The differences between the 1918 pandemic strain containing polymorphisms that are found in two mammalian sources, swine and human, and a pandemic strain such as avian H5N1 which has acquired the ability to efficiently transmit in a mammalian host, will be discussed.

      Comment

      • #78
        Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

        Originally posted by niman View Post
        From the abstract (which summarize the main points) of the paper:

        Using an exhaustive search and a nonparametric<SUP> </SUP>test for mosaic structure, we identified 315 sequences (2%)<SUP> </SUP>in five different RNA segments that, after a multiple comparisons<SUP> </SUP>correction, had statistically significant mosaic signals compatible<SUP> </SUP>with homologous recombination.
        ..and the headline summarizes the abstract.
        Even if there were strong evidence for short recombinations (<100),
        there should also be some more longer ones.
        This is unusual, that I can't find them in human sequences.
        I'm interested in expert panflu damage estimates
        my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

        Comment

        • #79
          Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

          > In six of the eight genes, the percentage of human polymorphisms
          > are higher than the swine polymorphisms, PB2(51/40), PB1(55/40),
          > PA(52/39), HA(53/49), MP(52/40), NS(55/41) while the
          > swine polymorphisms are greater in the remaining two gene
          > segments, NP(42/47) and NA(34/51).

          can you explain, how you define "human polymorphism" and
          "swine polymorphism" ? How I can verify the numbers ?
          I'm interested in expert panflu damage estimates
          my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

          Comment

          • #80
            Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

            Originally posted by gsgs View Post
            ..and the headline summarizes the abstract.
            Even if there were strong evidence for short recombinations (<100),
            there should also be some more longer ones.
            This is unusual, that I can't find them in human sequences.
            Please.

            Comment

            • #81
              Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

              Originally posted by gsgs View Post
              > In six of the eight genes, the percentage of human polymorphisms
              > are higher than the swine polymorphisms, PB2(51/40), PB1(55/40),
              > PA(52/39), HA(53/49), MP(52/40), NS(55/41) while the
              > swine polymorphisms are greater in the remaining two gene
              > segments, NP(42/47) and NA(34/51).

              can you explain, how you define "human polymorphism" and
              "swine polymorphism" ? How I can verify the numbers ?
              The swine polymorphisms were in the swine isolate, and the human were in WSN/33. All sequences are public.

              Comment

              • #82
                Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                Originally posted by gsgs View Post
                ..and the headline summarizes the abstract.
                Even if there were strong evidence for short recombinations (<100),
                there should also be some more longer ones.
                This is unusual, that I can't find them in human sequences.
                You couldn't find the 1991 sequences in the 2002 Korean recombinants, which means your assay and database needs work. Those recombinants were well into the OBVIOUS category.

                Comment

                • #83
                  Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                  Originally posted by gsgs View Post
                  ..and the headline summarizes the abstract.
                  Even if there were strong evidence for short recombinations (<100),
                  there should also be some more longer ones.
                  This is unusual, that I can't find them in human sequences.
                  Below is a partial travel log for one of the polymorphisms. Notice its movement into swine in 1994, disappearnce from human between 1994 and emergence in 2002 in South Korea, and its recent appearance in humans in Iran (list isn't in chronological order - Los Alamos is closed)

                  gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 28.2 146
                  gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 28.2 146
                  gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 28.2 146
                  gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 28.2 146
                  gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 28.2 146
                  gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 28.2 146
                  gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 28.2 146
                  gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 28.2 146
                  gb|EF456784.1| Influenza A virus (A/England/121/1995(H3N2)) s... 28.2 146
                  gb|EF456783.1| Influenza A virus (A/England/79/1994(H3N2)) se... 28.2 146
                  gb|EF118174.1| Influenza A virus (A/swine/Jena/3765/1989(H3N2... 28.2 146
                  gb|CY017307.1| Influenza A virus (A/New York/704/1994(H3N2)) ... 28.2 146
                  gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 28.2 146
                  gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 28.2 146
                  gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 28.2 146
                  gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 28.2 146
                  gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 28.2 146
                  gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 28.2 146
                  gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 28.2 146
                  gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 28.2 146
                  gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 28.2 146
                  gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 28.2 146
                  gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 28.2 146
                  gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 28.2 146
                  gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 28.2 146
                  gb|CY013887.1| Influenza A virus (A/New York/717/1994(H3N2)) ... 28.2 146
                  gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 28.2 146
                  gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 28.2 146
                  gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 28.2 146
                  gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 28.2 146
                  gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 28.2 146
                  gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 28.2 146
                  gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 28.2 146
                  gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 28.2 146
                  gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 28.2 146
                  gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 28.2 146
                  gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 28.2 146
                  gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 28.2 146
                  gb|CY013367.1| Influenza A virus (A/New York/745/1994(H3N2)) ... 28.2 146
                  gb|CY013359.1| Influenza A virus (A/New York/744/1994(H3N2)) ... 28.2 146
                  gb|CY013351.1| Influenza A virus (A/New York/743/1994(H3N2)) ... 28.2 146
                  gb|CY013343.1| Influenza A virus (A/New York/742/1994(H3N2)) ... 28.2 146
                  gb|CY013335.1| Influenza A virus (A/New York/731/1994(H3N2)) ... 28.2 146
                  gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 28.2 146
                  gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 28.2 146
                  gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 28.2 146
                  gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 28.2 146
                  gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 28.2 146
                  gb|CY013168.1| Influenza A virus (A/New York/754/1993(H3N2)) ... 28.2 146
                  gb|CY013024.1| Influenza A virus (A/New York/753/1994(H3N2)) ... 28.2 146
                  gb|CY013016.1| Influenza A virus (A/New York/750/1994(H3N2)) ... 28.2 146
                  gb|CY013008.1| Influenza A virus (A/New York/741/1994(H3N2)) ... 28.2 146
                  gb|CY013000.1| Influenza A virus (A/New York/740/1994(H3N2)) ... 28.2 146
                  gb|CY012992.1| Influenza A virus (A/New York/739/1994(H3N2)) ... 28.2 146
                  gb|CY012984.1| Influenza A virus (A/New York/738/1994(H3N2)) ... 28.2 146
                  gb|CY012976.1| Influenza A virus (A/New York/736/1994(H3N2)) ... 28.2 146
                  gb|CY012960.1| Influenza A virus (A/New York/725/1994(H3N2)) ... 28.2 146
                  gb|CY012952.1| Influenza A virus (A/New York/724/1994(H3N2)) ... 28.2 146
                  gb|CY012944.1| Influenza A virus (A/New York/723/1994(H3N2)) ... 28.2 146
                  gb|CY012936.1| Influenza A virus (A/New York/718/1994(H3N2)) ... 28.2 146
                  gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 28.2 146
                  gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 28.2 146
                  gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 28.2 146
                  gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 28.2 146
                  gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 28.2 146
                  gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 28.2 146
                  gb|CY012736.1| Influenza A virus (A/New York/770/1993(H3N2)) ... 28.2 146
                  gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 28.2 146
                  gb|CY012584.1| Influenza A virus (A/New York/748/1994(H3N2)) ... 28.2 146
                  gb|CY012576.1| Influenza A virus (A/New York/747/1994(H3N2)) ... 28.2 146
                  gb|CY012568.1| Influenza A virus (A/New York/746/1994(H3N2)) ... 28.2 146
                  gb|CY012560.1| Influenza A virus (A/New York/714/1994(H3N2)) ... 28.2 146
                  gb|CY012552.1| Influenza A virus (A/New York/713/1994(H3N2)) ... 28.2 146
                  gb|CY012544.1| Influenza A virus (A/New York/710/1994(H3N2)) ... 28.2 146
                  gb|CY012536.1| Influenza A virus (A/New York/707/1994(H3N2)) ... 28.2 146
                  gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 28.2 146
                  gb|CY012448.1| Influenza A virus (A/New York/655/1994(H3N2)) ... 28.2 146
                  gb|CY012288.1| Influenza A virus (A/New York/734/1994(H3N2)) ... 28.2 146
                  gb|CY012280.1| Influenza A virus (A/New York/730/1994(H3N2)) ... 28.2 146
                  gb|CY012272.1| Influenza A virus (A/New York/729/1994(H3N2)) ... 28.2 146
                  gb|CY012264.1| Influenza A virus (A/New York/722/1994(H3N2)) ... 28.2 146
                  gb|CY012224.1| Influenza A virus (A/New York/657/1994(H3N2)) ... 28.2 146
                  gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 28.2 146
                  gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 28.2 146
                  gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 28.2 146
                  gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 28.2 146
                  gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 28.2 146
                  gb|CY012144.1| Influenza A virus (A/New York/760/1993(H3N2)) ... 28.2 146
                  gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 28.2 146
                  gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 28.2 146
                  gb|CY012120.1| Influenza A virus (A/New York/756/1993(H3N2)) ... 28.2 146
                  gb|CY011944.1| Influenza A virus (A/New York/752/1993(H3N2)) ... 28.2 146
                  gb|CY011936.1| Influenza A virus (A/New York/728/1994(H3N2)) ... 28.2 146
                  gb|CY011928.1| Influenza A virus (A/New York/727/1994(H3N2)) ... 28.2 146
                  gb|CY011920.1| Influenza A virus (A/New York/726/1994(H3N2)) ... 28.2 146
                  gb|CY011912.1| Influenza A virus (A/New York/721/1994(H3N2)) ... 28.2 146
                  gb|CY011904.1| Influenza A virus (A/New York/720/1994(H3N2)) ... 28.2 146
                  gb|CY011896.1| Influenza A virus (A/New York/719/1994(H3N2)) ... 28.2 146
                  gb|CY011880.1| Influenza A virus (A/New York/715/1994(H3N2)) ... 28.2 146
                  gb|CY011872.1| Influenza A virus (A/New York/712/1993(H3N2)) ... 28.2 146
                  gb|CY011864.1| Influenza A virus (A/New York/711/1994(H3N2)) ... 28.2 146
                  gb|CY011856.1| Influenza A virus (A/New York/709/1994(H3N2)) ... 28.2 146
                  gb|CY011576.1| Influenza A virus (A/New York/751/1993(H3N2)) ... 28.2 146
                  gb|CY011488.1| Influenza A virus (A/New York/654/1994(H3N2)) ... 28.2 146
                  gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 28.2 146
                  gb|CY011472.1| Influenza A virus (A/Memphis/12/1985(H3N2)) se... 28.2 146
                  gb|CY011384.1| Influenza A virus (A/New York/732/1994(H3N2)) ... 28.2 146
                  gb|CY011376.1| Influenza A virus (A/New York/708/1994(H3N2)) ... 28.2 146
                  gb|CY011288.1| Influenza A virus (A/Memphis/5/1986(H3N2)) seg... 28.2 146
                  gb|CY010988.1| Influenza A virus (A/New York/733/1994(H3N2)) ... 28.2 146
                  gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 28.2 146
                  gb|DQ508849.1| Influenza A virus (A/Leningrad/360/1986(H3N2))... 28.2 146
                  gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 28.2 146
                  gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 28.2 146
                  gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 28.2 146
                  gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 28.2 146
                  gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 28.2 146
                  gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 28.2 146
                  gb|CY003520.1| Influenza A virus (A/Hong Kong/24/85(H3N2)) se... 28.2 146
                  gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 28.2 146
                  gb|CY003488.1| Influenza A virus (A/Hong Kong/46/80(H3N2)) se... 28.2 146
                  gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 28.2 146
                  gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 28.2 146
                  gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 28.2 146
                  gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 28.2 146
                  gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 28.2 146
                  gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 28.2 146
                  gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 28.2 146
                  gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 28.2 146
                  gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 28.2 146
                  gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 28.2 146
                  gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 28.2 146
                  gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 28.2 146
                  gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 28.2 146
                  gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 28.2 146
                  gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 28.2 146
                  gb|U49722.1|IAU49722 Influenza A virus (A/Florence/1/93(H3N2)... 28.2 146
                  gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 28.2 146
                  gb|AC105095.6| Homo sapiens chromosome 8, clone CTD-2146I9, c... 28.2 146
                  gb|AY137206.1| Influenza A virus (A/Guangdong/28/94(H3N2)) he... 28.2 146
                  gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 28.2 146
                  gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 28.2 146
                  gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 28.2 146
                  gb|AY661211.1| Influenza A virus (A/Singapore/3/93(H3N2)) hem... 28.2 146
                  gb|AY661204.1| Influenza A virus (A/Hongkong/55/94(H3N2)) hem... 28.2 146
                  gb|AY661180.1| Influenza A virus (A/Johannesburg/33/94(H3N2))... 28.2 146
                  gb|AY661179.1| Influenza A virus (A/Johannesburg/47/94(H3N2))... 28.2 146
                  gb|AY661178.1| Influenza A virus (A/Hongkong/56/94(H3N2)) hem... 28.2 146
                  gb|AY661175.1| Influenza A virus (A/Hongkong/1/94(H3N2)) hema... 28.2 146
                  gb|AY661173.1| Influenza A virus (A/Oslo/2219/93(H3N2)) hemag... 28.2 146
                  gb|AY661172.1| Influenza A virus (A/Lyon/23602/93(H3N2)) hema... 28.2 146
                  gb|AY661171.1| Influenza A virus (A/Lyon/22686/93(H3N2)) hema... 28.2 146
                  gb|AY661170.1| Influenza A virus (A/Lyon/1815/93(H3N2)) hemag... 28.2 146
                  gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 28.2 146
                  gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 28.2 146
                  gb|AY661166.1| Influenza A virus (A/Netherlands/398/93 (H3N2)... 28.2 146
                  gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 28.2 146
                  gb|AY661164.1| Influenza A virus (A/Netherlands/371/93 (H3N2)... 28.2 146
                  gb|AY661163.1| Influenza A virus (A/Netherlands/372/93(H3N2))... 28.2 146
                  gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 28.2 146
                  gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 28.2 146
                  gb|AY661160.1| Influenza A virus (A/Netherlands/241/93(H3N2))... 28.2 146
                  gb|AY661159.1| Influenza A virus (A/Shangdong/9/93(H3N2)) hem... 28.2 146
                  gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 28.2 146
                  gb|AY661156.1| Influenza A virus (A/Shiga/6/93(H3N2)) hemaggl... 28.2 146
                  gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 28.2 146
                  gb|AY661154.1| Influenza A virus (A/Yamagata/62/93(H3N2)) hem... 28.2 146
                  gb|AY661153.1| Influenza A virus (A/Yamagata/61/93(H3N2)) hem... 28.2 146
                  gb|AY661152.1| Influenza A virus (A/Yamagata/56/93(H3N2)) hem... 28.2 146
                  gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 28.2 146
                  gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 28.2 146
                  gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 28.2 146
                  gb|AY661148.1| Influenza A virus (A/Madrid/G130/93(H3N2)) hem... 28.2 146
                  gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 28.2 146
                  gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 28.2 146
                  gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 28.2 146
                  gb|AY661144.1| Influenza A virus (A/Madrid/G102/93(H3N2)) hem... 28.2 146
                  gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 28.2 146
                  gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 28.2 146
                  gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 28.2 146
                  gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 28.2 146
                  gb|AY661139.1| Influenza A virus (A/Netherlands/101/93 (H3N2)... 28.2 146
                  gb|AY661138.1| Influenza A virus (A/Finland/247/92(H3N2)) hem... 28.2 146
                  gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 28.2 146
                  gb|AY661136.1| Influenza A virus (A/Stockholm/12/92(H3N2)) he... 28.2 146
                  gb|AY661135.1| Influenza A virus (A/Umea/2000/92(H3N2)) hemag... 28.2 146
                  gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 28.2 146
                  gb|AY661133.1| Influenza A virus (A/Netherlands/17/93(H3N2)) ... 28.2 146
                  gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 28.2 146
                  gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 28.2 146
                  gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 28.2 146
                  gb|AY661129.1| Influenza A virus (A/Sendai/C273/92(H3N2)) hem... 28.2 146
                  gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 28.2 146
                  gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 28.2 146
                  gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 28.2 146
                  gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 28.2 146
                  gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 28.2 146
                  gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 28.2 146
                  gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 28.2 146
                  gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 28.2 146
                  gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 28.2 146
                  gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 28.2 146
                  gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 28.2 146
                  gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 28.2 146
                  gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 28.2 146
                  gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 28.2 146
                  gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 28.2 146
                  gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 28.2 146
                  gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 28.2 146
                  gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 28.2 146
                  gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 28.2 146
                  gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 28.2 146
                  gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 28.2 146
                  gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 28.2 146
                  gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 28.2 146
                  gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 28.2 146
                  gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 28.2 146
                  gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 28.2 146
                  gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 28.2 146
                  gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 28.2 146
                  gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 28.2 146
                  gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 28.2 146
                  gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 28.2 146
                  gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 28.2 146
                  gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 28.2 146
                  gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 28.2 146
                  gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 28.2 146
                  gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 28.2 146
                  gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 28.2 146
                  gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 28.2 146
                  gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 28.2 146
                  gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 28.2 146
                  gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 28.2 146
                  gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 28.2 146
                  gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 28.2 146
                  gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 28.2 146
                  gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 28.2 146
                  gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 28.2 146
                  gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 28.2 146
                  gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 28.2 146
                  gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 28.2 146
                  gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 28.2 146
                  gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 28.2 146
                  gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 28.2 146
                  gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 28.2 146
                  gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 28.2 146
                  gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 28.2 146
                  gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 28.2 146
                  gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 28.2 146
                  gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 28.2 146
                  gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 28.2 146
                  gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 28.2 146
                  gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 28.2 146
                  gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 28.2 146
                  gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 28.2 146
                  gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 28.2 146
                  gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 28.2 146
                  gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 28.2 146
                  gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 28.2 146
                  gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 28.2 146
                  gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 28.2 146
                  gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 28.2 146
                  gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 28.2 146
                  gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 28.2 146
                  gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 28.2 146
                  gb|AY661055.1| Influenza A virus (A/England/427/88(H3N2)) hem... 28.2 146
                  gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 28.2 146
                  gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 28.2 146
                  gb|AY661052.1| Influenza A virus (A/Stockholm/10/85(H3N2)) he... 28.2 146
                  gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 28.2 146
                  gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 28.2 146
                  gb|AY661049.1| Influenza A virus (A/Netherlands/330/85(H3N2))... 28.2 146
                  gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 28.2 146
                  gb|AY661047.1| Influenza A virus (A/Netherlands/209/80(H3N2))... 28.2 146
                  gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 28.2 146
                  gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 28.2 146
                  gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 28.2 146
                  gb|AY661020.1| Influenza A virus (A/Netherlands/18/94(H3N2)) ... 28.2 146
                  gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 28.2 146
                  gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 28.2 146
                  gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 28.2 146
                  gb|CY008668.1| Influenza A virus (A/Memphis/25/85(H3N2)) segm... 28.2 146
                  gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 28.2 146
                  gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 28.2 146
                  gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 28.2 146
                  gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 28.2 146
                  gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 28.2 146
                  gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 28.2 146
                  gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 28.2 146
                  gb|AF405211.1| Influenza A virus (A/Baylor5B/85(H3N2)) hemagg... 28.2 146
                  gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 28.2 146
                  gb|AF405209.1| Influenza A virus (A/Baylor3A/83(H3N2)) hemagg... 28.2 146
                  gb|AF405208.1| Influenza A virus (A/Baylor2A/81(H3N2)) hemagg... 28.2 146
                  gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 28.2 146
                  gb|AF405206.1| Influenza A virus (A/Baylor1A/81(H3N2)) hemagg... 28.2 146
                  gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 28.2 146
                  gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 28.2 146
                  emb|Z46416.1| Influenza A virus (A/Scotland/173/1993(H3N2)) m... 28.2 146
                  emb|Z46414.1| Influenza A virus (A/Scotland/160/1993(H3N2)) m... 28.2 146
                  emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 28.2 146
                  emb|Z46401.1| Influenza A virus (A/England/347/1993(H3N2)) mR... 28.2 146
                  emb|Z46400.1| Influenza A virus (A/England/346/1993(H3N2)) mR... 28.2 146
                  emb|Z46399.1| Influenza A virus (A/England/328/1993(H3N2)) mR... 28.2 146
                  emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 28.2 146
                  emb|Z46397.1| Influenza A virus (A/England/286/1993(H3N2)) mR... 28.2 146
                  emb|Z46396.1| Influenza A virus (A/England/284/1993(H3N2)) mR... 28.2 146
                  emb|Z46395.1| Influenza A virus (A/England/269/93(H3N2)) mRNA... 28.2 146
                  emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 28.2 146
                  emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 28.2 146
                  emb|Z46417.1| Influenza A virus (A/Shangdong/9/1993(H3N2)) mR... 28.2 146
                  emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 28.2 146
                  emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 28.2 146
                  emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 28.2 146
                  emb|Z46404.1| Influenza A virus (A/England/68/1994(H3N2)) mRN... 28.2 146
                  emb|Z46403.1| Influenza A virus (A/England/67/1994(H3N2)) mRN... 28.2 146
                  emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 28.2 146
                  emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 28.2 146
                  emb|Z46408.1| Influenza A virus (A/Hong Kong/2/1994(H3N2)) mR... 28.2 146
                  emb|Z46407.1| Influenza A virus (A/Hong Kong/1/1994(H3N2)) mR... 28.2 146
                  emb|Z46405.1| Influenza A virus (A/England/7/1994(H3N2)) mRNA... 28.2 146
                  emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 28.2 146
                  emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 28.2 146
                  gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 28.2 146
                  gb|AF008892.1|AF008892 Influenza A virus (A/Baylor6B/Texas/25... 28.2 146
                  gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 28.2 146
                  gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 28.2 146
                  gb|AF008866.1|AF008866 Influenza A virus (A/Baylor2B/Texas/25... 28.2 146
                  gb|AF386617.1|AF386617 Influenza A virus (A/Kangwon/93/99(H3N... 28.2 146
                  gb|AF386616.1|AF386616 Influenza A virus (A/Kangwon/88/99(H3N... 28.2 146
                  gb|AF386613.1|AF386613 Influenza A virus (A/Daegu/103/98(H3N2... 28.2 146
                  gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 28.2 146
                  gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 28.2 146
                  gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 28.2 146
                  gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 28.2 146
                  gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 28.2 146
                  gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 28.2 146
                  gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 28.2 146
                  gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 28.2 146
                  gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 28.2 146
                  gb|AY377933.1| Influenza A virus (A/swine/Changhua/72-10 clon... 28.2 146
                  emb|AJ252131.1|IVI252131 Influenza A virus ha gene for heamag... 28.2 146
                  emb|AJ252129.1|IVI252129 Influenza A virus (A/Berlin/6/88(H3N... 28.2 146
                  gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 28.2 146
                  gb|AF201846.1|AF201846 Influenza A virus (A/Praha/2/83(HI min... 28.2 146
                  gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 28.2 146
                  gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 28.2 146
                  gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 28.2 146
                  gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 28.2 146
                  gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 28.2 146
                  gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 28.2 146
                  gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 28.2 146
                  gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 28.2 146
                  gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 28.2 146
                  gb|AF180666.1| Influenza A virus (A/Virginia/1/91(H3N2)) hema... 28.2 146
                  gb|AF180570.1| Influenza A virus (A/Hong Kong/434/96(H3N2)) h... 28.2 146
                  gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 28.2 146
                  gb|AF180566.1| Influenza A virus (A/Yokohama/73/92(H3N2)) hem... 28.2 146
                  gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 28.2 146
                  gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 28.2 146
                  dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 28.2 146
                  dbj|D30665.1|FLASPH14 Influenza A virus (A/Yokohama/73/92(H3N... 28.2 146
                  dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 28.2 146
                  dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 28.2 146
                  dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 28.2 146
                  dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 28.2 146
                  gb|AF008909.1|AF008909 Influenza A virus (Uruguay/3/88(H3N2))... 28.2 146
                  gb|AF008908.1|AF008908 Influenza A virus (A/Cheng-mei/4/85(H3... 28.2 146
                  gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 28.2 146
                  gb|AF008905.1|AF008905 Influenza A virus (A/Christ_Church/2/8... 28.2 146
                  gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 28.2 146
                  gb|AF008903.1|AF008903 Influenza A virus (A/Leningrad/360/86(... 28.2 146
                  gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 28.2 146
                  gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 28.2 146
                  gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 28.2 146
                  gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 28.2 146
                  gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 28.2 146
                  gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 28.2 146
                  gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 28.2 146
                  gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 28.2 146
                  gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 28.2 146
                  gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 28.2 146
                  gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 28.2 146
                  gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 28.2 146
                  gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 28.2 146
                  gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 28.2 146
                  gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 28.2 146
                  gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 28.2 146
                  gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 28.2 146
                  gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 28.2 146
                  gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 28.2 146
                  gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 28.2 146
                  gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 28.2 146
                  gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 28.2 146
                  gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 28.2 146
                  gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 28.2 146
                  gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 28.2 146
                  gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 28.2 146
                  gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 28.2 146
                  gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 28.2 146
                  gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 28.2 146
                  gb|AF008865.1|AF008865 Influenza A virus (A/Stockholm/4/(H3N2... 28.2 146
                  gb|AF008864.1|AF008864 Influenza A virus (A/USSR/26/(H3N2)) h... 28.2 146
                  gb|AF008863.1|AF008863 Influenza A virus (A/Alaska/84(H3N2)) ... 28.2 146
                  gb|AF008862.1|AF008862 Influenza A virus (A/Guizhou/3/(H3N2))... 28.2 146
                  gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 28.2 146
                  gb|AF008859.1|AF008859 Influenza A virus (A/Santiago/7198/94(... 28.2 146
                  gb|AF008858.1|AF008858 Influenza A virus (A/Wuzhou/1/94(H3N2)... 28.2 146
                  gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 28.2 146
                  gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 28.2 146
                  gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 28.2 146
                  gb|AF008852.1|AF008852 Influenza A virus (A/Washington/41/93(... 28.2 146
                  gb|AF008851.1|AF008851 Influenza A virus (A/Wyoming/1/93(H3N2... 28.2 146
                  gb|AF008850.1|AF008850 Influenza A virus (A/Washington/26/93(... 28.2 146
                  gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 28.2 146
                  gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 28.2 146
                  gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 28.2 146
                  gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 28.2 146
                  gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 28.2 146
                  gb|AF008844.1|AF008844 Influenza A virus (A/Stockholm/1/93(H3... 28.2 146
                  gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 28.2 146
                  gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 28.2 146
                  gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 28.2 146
                  gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 28.2 146
                  gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 28.2 146
                  gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 28.2 146
                  gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 28.2 146
                  gb|AF008834.1|AF008834 Influenza A virus (A/Netherlands/372/9... 28.2 146
                  gb|AF008833.1|AF008833 Influenza A virus (A/California/5/93(H... 28.2 146
                  gb|AF008832.1|AF008832 Influenza A virus (A/Vermont/3/94(H3N2... 28.2 146
                  gb|AF008831.1|AF008831 Influenza A virus (A/Romania/182/94(H3... 28.2 146
                  gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 28.2 146
                  gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 28.2 146
                  gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 28.2 146
                  gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 28.2 146
                  gb|AF008826.1|AF008826 Influenza A virus (A/Romania/160/94(H3... 28.2 146
                  gb|AF008825.1|AF008825 Influenza A virus (A/Akita/1/94(H3N2))... 28.2 146
                  gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 28.2 146
                  gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 28.2 146
                  gb|AF008821.1|AF008821 Influenza A virus (A/New_York/13/93(H3... 28.2 146
                  gb|AF008820.1|AF008820 Influenza A virus (A/Shangdong/9/93(H3... 28.2 146
                  gb|AF008819.1|AF008819 Influenza A virus (A/Sapporro/92(H3N2)... 28.2 146
                  gb|AF008818.1|AF008818 Influenza A virus (A/Paris/688/93(H3N2... 28.2 146
                  gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 28.2 146
                  gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 28.2 146
                  gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 28.2 146
                  gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 28.2 146
                  gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 28.2 146
                  gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 28.2 146
                  gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 28.2 146
                  gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 28.2 146
                  gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 28.2 146
                  gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 28.2 146
                  gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 28.2 146
                  gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 28.2 146
                  gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 28.2 146
                  gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 28.2 146
                  gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 28.2 146
                  gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 28.2 146
                  gb|AF008800.1|AF008800 Influenza A virus (A/Russia/46967/94(H... 28.2 146
                  gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 28.2 146
                  gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 28.2 146
                  gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 28.2 146
                  gb|AF008796.1|AF008796 Influenza A virus (A/New_York/42/95(H3... 28.2 146
                  gb|AF008795.1|AF008795 Influenza A virus (A/New_York/16/94(H3... 28.2 146
                  gb|AF008791.1|AF008791 Influenza A virus (A/New_York/17/94(H3... 28.2 146
                  gb|AF008790.1|AF008790 Influenza A virus (A/Argentina/3779/94... 28.2 146
                  gb|AF008788.1|AF008788 Influenza A virus (A/Pennsylvania/7/94... 28.2 146
                  gb|AF008774.1|AF008774 Influenza A virus (A/Johannesburg/33/9... 28.2 146
                  gb|AF008773.1|AF008773 Influenza A virus (A/Hong_Kong/55/94(H... 28.2 146
                  gb|AF008772.1|AF008772 Influenza A virus (A/Hong_Kong/1/94(H3... 28.2 146
                  gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 28.2 146
                  dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 28.2 146
                  dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 28.2 146
                  dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 28.2 146
                  dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 28.2 146
                  dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 28.2 146
                  dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 28.2 146
                  dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 28.2 146
                  dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 28.2 146
                  dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 28.2 146
                  gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 28.2 146
                  gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 28.2 146
                  dbj|AB043708.1| Influenza A virus (A/Aichi/2/94(H3N2)) HA gen... 28.2 146
                  dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 28.2 146
                  dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 28.2 146
                  dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 28.2 146
                  gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 28.2 146
                  gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 28.2 146
                  gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 28.2 146
                  gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 28.2 146
                  gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 28.2 146
                  gb|U77836.1|IAU77836 Influenza A virus (A/Tottori/872AM4/1994... 28.2 146
                  gb|U77835.1|IAU77835 Influenza A virus (A/Tottori/849AM4/1994... 28.2 146
                  gb|U77834.1|IAU77834 Influenza A virus (A/Tottori/872AM2/1994... 28.2 146
                  gb|U77833.1|IAU77833 Influenza A virus (A/Tottori/849AM2/1994... 28.2 146
                  gb|U77832.1|IAU77832 Influenza A virus (A/Tottori/872K4/1994(... 28.2 146
                  gb|U77831.1|IAU77831 Influenza A virus (A/Tottori/849K4/1994)... 28.2 146
                  gb|AF008704.1|AF008704 Influenza A virus (A/Russia/31/93(H3N2... 28.2 146
                  gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 28.2 146
                  gb|AF008702.1|AF008702 Influenza A virus (A/Paris/80/91(H3N2)... 28.2 146
                  gb|AF008701.1|AF008701 Influenza A virus (A/Spain/118/93(H3N2... 28.2 146
                  gb|AF008700.1|AF008700 Influenza A virus (A/Victoria/29/92(H3... 28.2 146
                  gb|AF008699.1|AF008699 Influenza A virus (A/Wellington/66/92(... 28.2 146
                  gb|AF008698.1|AF008698 Influenza A virus (A/Beijing/47/92(H3N... 28.2 146
                  gb|AF008697.1|AF008697 Influenza A virus (A/Victoria/68/92(H3... 28.2 146
                  gb|AF008696.1|AF008696 Influenza A virus (A/South_Australia/6... 28.2 146
                  gb|AF008695.1|AF008695 Influenza A virus (A/Singapore/8/92(H3... 28.2 146
                  gb|AF008694.1|AF008694 Influenza A virus (A/Indonesia/3946/92... 28.2 146
                  gb|AF008693.1|AF008693 Influenza A virus (A/Umea/2/92(H3N2)) ... 28.2 146
                  gb|AF008692.1|AF008692 Influenza A virus (A/Umea/1/92(H3N2)) ... 28.2 146
                  gb|AF008691.1|AF008691 Influenza A virus (A/Kasauli/149/92(H3... 28.2 146
                  gb|AF008690.1|AF008690 Influenza A virus (A/India/237/93(H3N2... 28.2 146
                  gb|AF008689.1|AF008689 Influenza A virus (A/India/236/93(H3N2... 28.2 146
                  gb|AF008688.1|AF008688 Influenza A virus (A/England/261/91(H3... 28.2 146
                  gb|AF008687.1|AF008687 Influenza A virus (A/Brazil/91(H3N2)) ... 28.2 146
                  gb|AF008685.1|AF008685 Influenza A virus (A/Hawaii/1/91(H3N2)... 28.2 146
                  gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 28.2 146
                  gb|AF008683.1|AF008683 Influenza A virus (A/Puerto_Rico/1/90(... 28.2 146
                  gb|AF008682.1|AF008682 Influenza A virus (A/Shiga/2/91(H3N2))... 28.2 146
                  gb|AF008681.1|AF008681 Influenza A virus (A/Indiana/3/91(H3N2... 28.2 146
                  gb|AF008680.1|AF008680 Influenza A virus (A/South_Australia/3... 28.2 146
                  gb|AF008679.1|AF008679 Influenza A virus (A/Pennsylvania/09/9... 28.2 146
                  gb|AF008678.1|AF008678 Influenza A virus (A/Seoul/45/91(H3N2)... 28.2 146
                  gb|AF008677.1|AF008677 Influenza A virus (A/Sophia/155/93(H3N... 28.2 146
                  gb|AF008676.1|AF008676 Influenza A virus (A/Washington/15/91(... 28.2 146
                  gb|AF008675.1|AF008675 Influenza A virus (A/South_Dakota/1/91... 28.2 146
                  gb|AF008674.1|AF008674 Influenza A virus (A/Mexico/3255/94(H3... 28.2 146
                  gb|AF008673.1|AF008673 Influenza A virus (A/Victoria/5/89(H3N... 28.2 146
                  gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 28.2 146
                  gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 28.2 146
                  gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 28.2 146
                  gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 28.2 146
                  gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 28.2 146
                  gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 28.2 146
                  gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 28.2 146
                  gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 28.2 146
                  gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 28.2 146
                  gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 28.2 146
                  gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 28.2 146
                  gb|AF008661.1|AF008661 Influenza A virus (A/Singapore/91(H3N2... 28.2 146
                  gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 28.2 146
                  gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 28.2 146
                  gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 28.2 146
                  gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 28.2 146
                  gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 28.2 146
                  gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 28.2 146
                  gb|L76035.1|FLAHMG Influenza A virus (A/Beijing/32/1992(H3N2)... 28.2 146
                  gb|L76037.1|FLAHMGB Influenza A virus (A/Shangdong/9/1993(H3N... 28.2 146
                  gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 28.2 146
                  gb|L75988.1|FLASEG4N Influenza A virus (A/Finland/296/1993(H3... 28.2 146
                  gb|L75987.1|FLASEG4M Influenza A virus (A/Finland/295/1993(H3... 28.2 146
                  gb|L75986.1|FLASEG4L Influenza A virus (A/Finland/292/1993(H3... 28.2 146
                  gb|L75985.1|FLASEG4K Influenza A virus (A/Finland/278/1993(H3... 28.2 146
                  gb|L75984.1|FLASEG4J Influenza A virus (A/Finland/276/1993(H3... 28.2 146
                  gb|L75983.1|FLASEG4I Influenza A virus (A/Finland/274/1993(H3... 28.2 146
                  gb|L75982.1|FLASEG4H Influenza A virus (A/Finland/263/1993(H3... 28.2 146
                  gb|L75981.1|FLASEG4G Influenza A virus (A/Finland/247/1992(H3... 28.2 146
                  gb|L75980.1|FLASEG4F Influenza A virus (A/Finland/239/1992(H3... 28.2 146
                  gb|L75979.1|FLASEG4E Influenza A virus (A/Finland/211/1992(H3... 28.2 146
                  gb|L75978.1|FLASEG4D Influenza A virus (A/Finland/189/1991(H3... 28.2 146
                  gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 28.2 146
                  gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 28.2 146
                  gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 28.2 146
                  gb|U48443.1|IAU48443 Influenza A virus (A/Akita/1/94(H3N2)) h... 28.2 146
                  gb|U48442.1|IAU48442 Influenza A virus (A/Guandong/28/1994(H3... 28.2 146
                  gb|U48439.1|IAU48439 Influenza A virus (A/Sendai/c182/1994(H3... 28.2 146
                  dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 28.2 146
                  dbj|D43791.1|FLAHF Influenza A virus (A/sw/Obihiro/2/1993(H3N... 28.2 146
                  dbj|D43790.1|FLAHE Influenza A virus (A/sw/Obihiro/1/1993(H3N... 28.2 146
                  dbj|D43789.1|FLAHD Influenza A virus (A/Hokkaido/2/1993(H3N2)... 28.2 146
                  dbj|D43788.1|FLAHC Influenza A virus (A/Hokkaido/1/1993(H3N2)... 28.2 146
                  dbj|D43787.1|FLAHB Influenza A virus (A/Hokkaido/1/1988(H3N2)... 28.2 146
                  dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 28.2 146
                  dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 28.2 146
                  gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 28.2 146
                  gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 28.2 146
                  gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 28.2 146
                  gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 28.2 146
                  gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 28.2 146
                  gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 28.2 146
                  gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 28.2 146
                  gb|L19002.1|FLAPHILHA Influenza A virus (A/Philippines/2/1982... 28.2 146
                  gb|L19003.1|FLAMISSHA Influenza A virus (A/Mississippi/1/1985... 28.2 146
                  gb|CY006347.1| Influenza A virus (A/Nanchang/58/93(H3N2)) seg... 28.2 146
                  gb|CY006339.1| Influenza A virus (A/Nanchang/0058/94(H3N2)) s... 28.2 146
                  gb|CY006315.1| Influenza A virus (A/Hong Kong/14/83(H3N2)) se... 28.2 146
                  gb|M21648.1|FLAM686HA Influenza A virus (A/Mem/6/1986(H3N2)) ... 28.2 146
                  gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 28.2 146
                  gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 28.2 146

                  Comment

                  • #84
                    Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                    Originally posted by gsgs View Post
                    ..and the headline summarizes the abstract.
                    Even if there were strong evidence for short recombinations (<100),
                    there should also be some more longer ones.
                    This is unusual, that I can't find them in human sequences.
                    Here is a full travel log for tandem changes (still not in chronological order, but pretty easy to read). Tandem changes are will outside of the "conincidence" or "radom mutation" range. Recombination is the name of the game.

                    gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 50.1 8e-07
                    gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 50.1 8e-07
                    gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 50.1 8e-07
                    gb|EF409246.1| Influenza A virus (A/swine/Karrenzien/2/87(H3N... 50.1 8e-07
                    gb|EF626619.1| Influenza A virus (A/Phillipines/2/1982(H3N2))... 50.1 8e-07
                    gb|EF626611.1| Influenza A virus (A/Bangkok/2/1979(H3N2)) seg... 50.1 8e-07
                    gb|EF626610.1| Influenza A virus (A/Bangkok/1/1979(H3N2)) seg... 50.1 8e-07
                    gb|DQ975254.1| Influenza A virus (A/swine/Italy/7/1981(H3N2))... 50.1 8e-07
                    gb|CY020333.1| Influenza A virus (A/Memphis/3/1986(H3N2)) seg... 50.1 8e-07
                    gb|EF456784.1| Influenza A virus (A/England/121/1995(H3N2)) s... 50.1 8e-07
                    gb|EF456783.1| Influenza A virus (A/England/79/1994(H3N2)) se... 50.1 8e-07
                    gb|EF118174.1| Influenza A virus (A/swine/Jena/3765/1989(H3N2... 50.1 8e-07
                    gb|CY017307.1| Influenza A virus (A/New York/704/1994(H3N2)) ... 50.1 8e-07
                    gb|CY016483.1| Influenza A virus (A/New York/800/1993(H3N2)) ... 50.1 8e-07
                    gb|CY016427.1| Influenza A virus (A/New York/706/1993(H3N2)) ... 50.1 8e-07
                    gb|CY016060.1| Influenza A virus (A/Memphis/2/1986(H3N2)) seg... 50.1 8e-07
                    gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 50.1 8e-07
                    gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 50.1 8e-07
                    gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013887.1| Influenza A virus (A/New York/717/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013367.1| Influenza A virus (A/New York/745/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013359.1| Influenza A virus (A/New York/744/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013351.1| Influenza A virus (A/New York/743/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013343.1| Influenza A virus (A/New York/742/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013335.1| Influenza A virus (A/New York/731/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013168.1| Influenza A virus (A/New York/754/1993(H3N2)) ... 50.1 8e-07
                    gb|CY013024.1| Influenza A virus (A/New York/753/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013016.1| Influenza A virus (A/New York/750/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013008.1| Influenza A virus (A/New York/741/1994(H3N2)) ... 50.1 8e-07
                    gb|CY013000.1| Influenza A virus (A/New York/740/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012992.1| Influenza A virus (A/New York/739/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012984.1| Influenza A virus (A/New York/738/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012976.1| Influenza A virus (A/New York/736/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012960.1| Influenza A virus (A/New York/725/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012952.1| Influenza A virus (A/New York/724/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012944.1| Influenza A virus (A/New York/723/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012936.1| Influenza A virus (A/New York/718/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012736.1| Influenza A virus (A/New York/770/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012584.1| Influenza A virus (A/New York/748/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012576.1| Influenza A virus (A/New York/747/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012568.1| Influenza A virus (A/New York/746/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012560.1| Influenza A virus (A/New York/714/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012552.1| Influenza A virus (A/New York/713/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012544.1| Influenza A virus (A/New York/710/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012536.1| Influenza A virus (A/New York/707/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012448.1| Influenza A virus (A/New York/655/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012288.1| Influenza A virus (A/New York/734/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012280.1| Influenza A virus (A/New York/730/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012272.1| Influenza A virus (A/New York/729/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012264.1| Influenza A virus (A/New York/722/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012224.1| Influenza A virus (A/New York/657/1994(H3N2)) ... 50.1 8e-07
                    gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012144.1| Influenza A virus (A/New York/760/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 50.1 8e-07
                    gb|CY012120.1| Influenza A virus (A/New York/756/1993(H3N2)) ... 50.1 8e-07
                    gb|CY011944.1| Influenza A virus (A/New York/752/1993(H3N2)) ... 50.1 8e-07
                    gb|CY011936.1| Influenza A virus (A/New York/728/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011928.1| Influenza A virus (A/New York/727/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011920.1| Influenza A virus (A/New York/726/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011912.1| Influenza A virus (A/New York/721/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011904.1| Influenza A virus (A/New York/720/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011896.1| Influenza A virus (A/New York/719/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011880.1| Influenza A virus (A/New York/715/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011872.1| Influenza A virus (A/New York/712/1993(H3N2)) ... 50.1 8e-07
                    gb|CY011864.1| Influenza A virus (A/New York/711/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011856.1| Influenza A virus (A/New York/709/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011576.1| Influenza A virus (A/New York/751/1993(H3N2)) ... 50.1 8e-07
                    gb|CY011488.1| Influenza A virus (A/New York/654/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 50.1 8e-07
                    gb|CY011472.1| Influenza A virus (A/Memphis/12/1985(H3N2)) se... 50.1 8e-07
                    gb|CY011384.1| Influenza A virus (A/New York/732/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011376.1| Influenza A virus (A/New York/708/1994(H3N2)) ... 50.1 8e-07
                    gb|CY011288.1| Influenza A virus (A/Memphis/5/1986(H3N2)) seg... 50.1 8e-07
                    gb|CY010988.1| Influenza A virus (A/New York/733/1994(H3N2)) ... 50.1 8e-07
                    gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 50.1 8e-07
                    gb|DQ508849.1| Influenza A virus (A/Leningrad/360/1986(H3N2))... 50.1 8e-07
                    gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 50.1 8e-07
                    gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 50.1 8e-07
                    gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 50.1 8e-07
                    gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 50.1 8e-07
                    gb|CY006043.1| Influenza A virus (A/Hong Kong/45/80(H3N2)) se... 50.1 8e-07
                    gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 50.1 8e-07
                    gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 50.1 8e-07
                    gb|CY003520.1| Influenza A virus (A/Hong Kong/24/85(H3N2)) se... 50.1 8e-07
                    gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 50.1 8e-07
                    gb|CY003488.1| Influenza A virus (A/Hong Kong/46/80(H3N2)) se... 50.1 8e-07
                    gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 50.1 8e-07
                    gb|CY002752.1| Influenza A virus (A/Memphis/1/86(H3N2)) segme... 50.1 8e-07
                    gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 50.1 8e-07
                    gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 50.1 8e-07
                    gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 50.1 8e-07
                    gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 50.1 8e-07
                    gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 50.1 8e-07
                    gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 50.1 8e-07
                    gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 50.1 8e-07
                    gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 50.1 8e-07
                    gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 50.1 8e-07
                    gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 50.1 8e-07
                    gb|U49722.1|IAU49722 Influenza A virus (A/Florence/1/93(H3N2)... 50.1 8e-07
                    gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 50.1 8e-07
                    gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 50.1 8e-07
                    gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 50.1 8e-07
                    gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 50.1 8e-07
                    gb|CY002088.1| Influenza A virus (A/Memphis/66/86(H3N2)) segm... 50.1 8e-07
                    gb|CY003720.1| Influenza A virus (A/Hong Kong/26/83(H3N2)) se... 50.1 8e-07
                    gb|AY661211.1| Influenza A virus (A/Singapore/3/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661204.1| Influenza A virus (A/Hongkong/55/94(H3N2)) hem... 50.1 8e-07
                    gb|AY661180.1| Influenza A virus (A/Johannesburg/33/94(H3N2))... 50.1 8e-07
                    gb|AY661179.1| Influenza A virus (A/Johannesburg/47/94(H3N2))... 50.1 8e-07
                    gb|AY661178.1| Influenza A virus (A/Hongkong/56/94(H3N2)) hem... 50.1 8e-07
                    gb|AY661175.1| Influenza A virus (A/Hongkong/1/94(H3N2)) hema... 50.1 8e-07
                    gb|AY661173.1| Influenza A virus (A/Oslo/2219/93(H3N2)) hemag... 50.1 8e-07
                    gb|AY661172.1| Influenza A virus (A/Lyon/23602/93(H3N2)) hema... 50.1 8e-07
                    gb|AY661171.1| Influenza A virus (A/Lyon/22686/93(H3N2)) hema... 50.1 8e-07
                    gb|AY661170.1| Influenza A virus (A/Lyon/1815/93(H3N2)) hemag... 50.1 8e-07
                    gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 50.1 8e-07
                    gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 50.1 8e-07
                    gb|AY661166.1| Influenza A virus (A/Netherlands/398/93 (H3N2)... 50.1 8e-07
                    gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 50.1 8e-07
                    gb|AY661163.1| Influenza A virus (A/Netherlands/372/93(H3N2))... 50.1 8e-07
                    gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 50.1 8e-07
                    gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 50.1 8e-07
                    gb|AY661160.1| Influenza A virus (A/Netherlands/241/93(H3N2))... 50.1 8e-07
                    gb|AY661159.1| Influenza A virus (A/Shangdong/9/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 50.1 8e-07
                    gb|AY661156.1| Influenza A virus (A/Shiga/6/93(H3N2)) hemaggl... 50.1 8e-07
                    gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 50.1 8e-07
                    gb|AY661154.1| Influenza A virus (A/Yamagata/62/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661153.1| Influenza A virus (A/Yamagata/61/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661152.1| Influenza A virus (A/Yamagata/56/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 50.1 8e-07
                    gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 50.1 8e-07
                    gb|AY661148.1| Influenza A virus (A/Madrid/G130/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 50.1 8e-07
                    gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661144.1| Influenza A virus (A/Madrid/G102/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 50.1 8e-07
                    gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 50.1 8e-07
                    gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 50.1 8e-07
                    gb|AY661139.1| Influenza A virus (A/Netherlands/101/93 (H3N2)... 50.1 8e-07
                    gb|AY661138.1| Influenza A virus (A/Finland/247/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 50.1 8e-07
                    gb|AY661136.1| Influenza A virus (A/Stockholm/12/92(H3N2)) he... 50.1 8e-07
                    gb|AY661135.1| Influenza A virus (A/Umea/2000/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661133.1| Influenza A virus (A/Netherlands/17/93(H3N2)) ... 50.1 8e-07
                    gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 50.1 8e-07
                    gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 50.1 8e-07
                    gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 50.1 8e-07
                    gb|AY661129.1| Influenza A virus (A/Sendai/C273/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 50.1 8e-07
                    gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 50.1 8e-07
                    gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 50.1 8e-07
                    gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 50.1 8e-07
                    gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 50.1 8e-07
                    gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 50.1 8e-07
                    gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 50.1 8e-07
                    gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 50.1 8e-07
                    gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 50.1 8e-07
                    gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 50.1 8e-07
                    gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 50.1 8e-07
                    gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 50.1 8e-07
                    gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 50.1 8e-07
                    gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 50.1 8e-07
                    gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 50.1 8e-07
                    gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 50.1 8e-07
                    gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 50.1 8e-07
                    gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 50.1 8e-07
                    gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 50.1 8e-07
                    gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 50.1 8e-07
                    gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 50.1 8e-07
                    gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 50.1 8e-07
                    gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 50.1 8e-07
                    gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 50.1 8e-07
                    gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 50.1 8e-07
                    gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 50.1 8e-07
                    gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 50.1 8e-07
                    gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 50.1 8e-07
                    gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 50.1 8e-07
                    gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 50.1 8e-07
                    gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 50.1 8e-07
                    gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 50.1 8e-07
                    gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 50.1 8e-07
                    gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 50.1 8e-07
                    gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 50.1 8e-07
                    gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 50.1 8e-07
                    gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 50.1 8e-07
                    gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 50.1 8e-07
                    gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 50.1 8e-07
                    gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 50.1 8e-07
                    gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 50.1 8e-07
                    gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 50.1 8e-07
                    gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 50.1 8e-07
                    gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 50.1 8e-07
                    gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 50.1 8e-07
                    gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 50.1 8e-07
                    gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 50.1 8e-07
                    gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 50.1 8e-07
                    gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 50.1 8e-07
                    gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 50.1 8e-07
                    gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 50.1 8e-07
                    gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 50.1 8e-07
                    gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 50.1 8e-07
                    gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 50.1 8e-07
                    gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 50.1 8e-07
                    gb|AY661055.1| Influenza A virus (A/England/427/88(H3N2)) hem... 50.1 8e-07
                    gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 50.1 8e-07
                    gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 50.1 8e-07
                    gb|AY661052.1| Influenza A virus (A/Stockholm/10/85(H3N2)) he... 50.1 8e-07
                    gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 50.1 8e-07
                    gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 50.1 8e-07
                    gb|AY661049.1| Influenza A virus (A/Netherlands/330/85(H3N2))... 50.1 8e-07
                    gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 50.1 8e-07
                    gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 50.1 8e-07
                    gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 50.1 8e-07
                    gb|AY661020.1| Influenza A virus (A/Netherlands/18/94(H3N2)) ... 50.1 8e-07
                    gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 50.1 8e-07
                    gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 50.1 8e-07
                    gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 50.1 8e-07
                    gb|CY008668.1| Influenza A virus (A/Memphis/25/85(H3N2)) segm... 50.1 8e-07
                    gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 50.1 8e-07
                    gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 50.1 8e-07
                    gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 50.1 8e-07
                    gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 50.1 8e-07
                    gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 50.1 8e-07
                    gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 50.1 8e-07
                    gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 50.1 8e-07
                    gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 50.1 8e-07
                    gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 50.1 8e-07
                    dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 8e-07
                    dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 50.1 8e-07
                    gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 50.1 8e-07
                    gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 50.1 8e-07
                    emb|Z46416.1| Influenza A virus (A/Scotland/173/1993(H3N2)) m... 50.1 8e-07
                    emb|Z46414.1| Influenza A virus (A/Scotland/160/1993(H3N2)) m... 50.1 8e-07
                    emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 50.1 8e-07
                    emb|Z46401.1| Influenza A virus (A/England/347/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46400.1| Influenza A virus (A/England/346/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46399.1| Influenza A virus (A/England/328/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46397.1| Influenza A virus (A/England/286/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46396.1| Influenza A virus (A/England/284/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46395.1| Influenza A virus (A/England/269/93(H3N2)) mRNA... 50.1 8e-07
                    emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 50.1 8e-07
                    emb|Z46417.1| Influenza A virus (A/Shangdong/9/1993(H3N2)) mR... 50.1 8e-07
                    emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 50.1 8e-07
                    emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 50.1 8e-07
                    emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 50.1 8e-07
                    emb|Z46404.1| Influenza A virus (A/England/68/1994(H3N2)) mRN... 50.1 8e-07
                    emb|Z46403.1| Influenza A virus (A/England/67/1994(H3N2)) mRN... 50.1 8e-07
                    emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 50.1 8e-07
                    emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 50.1 8e-07
                    emb|Z46407.1| Influenza A virus (A/Hong Kong/1/1994(H3N2)) mR... 50.1 8e-07
                    emb|Z46405.1| Influenza A virus (A/England/7/1994(H3N2)) mRNA... 50.1 8e-07
                    emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 50.1 8e-07
                    emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 50.1 8e-07
                    gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 50.1 8e-07
                    gb|AF008892.1|AF008892 Influenza A virus (A/Baylor6B/Texas/25... 50.1 8e-07
                    gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 50.1 8e-07
                    gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 50.1 8e-07
                    gb|AF008866.1|AF008866 Influenza A virus (A/Baylor2B/Texas/25... 50.1 8e-07
                    gb|AF386617.1|AF386617 Influenza A virus (A/Kangwon/93/99(H3N... 50.1 8e-07
                    gb|AF386616.1|AF386616 Influenza A virus (A/Kangwon/88/99(H3N... 50.1 8e-07
                    gb|AF386613.1|AF386613 Influenza A virus (A/Daegu/103/98(H3N2... 50.1 8e-07
                    gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 50.1 8e-07
                    gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 50.1 8e-07
                    gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 50.1 8e-07
                    gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 50.1 8e-07
                    gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 50.1 8e-07
                    gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 50.1 8e-07
                    gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 50.1 8e-07
                    gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 50.1 8e-07
                    gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 50.1 8e-07
                    gb|AY377933.1| Influenza A virus (A/swine/Changhua/72-10 clon... 50.1 8e-07
                    emb|AJ252131.1|IVI252131 Influenza A virus ha gene for heamag... 50.1 8e-07
                    emb|AJ252129.1|IVI252129 Influenza A virus (A/Berlin/6/88(H3N... 50.1 8e-07
                    gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 50.1 8e-07
                    gb|AF201846.1|AF201846 Influenza A virus (A/Praha/2/83(HI min... 50.1 8e-07
                    gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 50.1 8e-07
                    gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 50.1 8e-07
                    gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 50.1 8e-07
                    gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 50.1 8e-07
                    gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 50.1 8e-07
                    gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 50.1 8e-07
                    gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 50.1 8e-07
                    gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 50.1 8e-07
                    gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 50.1 8e-07
                    gb|AF092063.1|AF092063 Influenza A virus (A/Wellington/4/85) ... 50.1 8e-07
                    gb|AF180666.1| Influenza A virus (A/Virginia/1/91(H3N2)) hema... 50.1 8e-07
                    gb|AF180570.1| Influenza A virus (A/Hong Kong/434/96(H3N2)) h... 50.1 8e-07
                    gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 50.1 8e-07
                    gb|AF180566.1| Influenza A virus (A/Yokohama/73/92(H3N2)) hem... 50.1 8e-07
                    gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 50.1 8e-07
                    gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 50.1 8e-07
                    gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 50.1 8e-07
                    dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 50.1 8e-07
                    dbj|D30665.1|FLASPH14 Influenza A virus (A/Yokohama/73/92(H3N... 50.1 8e-07
                    dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 50.1 8e-07
                    dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 50.1 8e-07
                    dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 50.1 8e-07
                    dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 50.1 8e-07
                    gb|AF008908.1|AF008908 Influenza A virus (A/Cheng-mei/4/85(H3... 50.1 8e-07
                    gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 50.1 8e-07
                    gb|AF008905.1|AF008905 Influenza A virus (A/Christ_Church/2/8... 50.1 8e-07
                    gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 50.1 8e-07
                    gb|AF008903.1|AF008903 Influenza A virus (A/Leningrad/360/86(... 50.1 8e-07
                    gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 50.1 8e-07
                    gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 50.1 8e-07
                    gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 50.1 8e-07
                    gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 50.1 8e-07
                    gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 50.1 8e-07
                    gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 50.1 8e-07
                    gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 50.1 8e-07
                    gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 50.1 8e-07
                    gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 50.1 8e-07
                    gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 50.1 8e-07
                    gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 50.1 8e-07
                    gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 50.1 8e-07
                    gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 50.1 8e-07
                    gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 50.1 8e-07
                    gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 50.1 8e-07
                    gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 50.1 8e-07
                    gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 50.1 8e-07
                    gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 50.1 8e-07
                    gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 50.1 8e-07
                    gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 50.1 8e-07
                    gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 50.1 8e-07
                    gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 50.1 8e-07
                    gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 50.1 8e-07
                    gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 50.1 8e-07
                    gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 50.1 8e-07
                    gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 50.1 8e-07
                    gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 50.1 8e-07
                    gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 50.1 8e-07
                    gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 50.1 8e-07
                    gb|AF008865.1|AF008865 Influenza A virus (A/Stockholm/4/(H3N2... 50.1 8e-07
                    gb|AF008864.1|AF008864 Influenza A virus (A/USSR/26/(H3N2)) h... 50.1 8e-07
                    gb|AF008863.1|AF008863 Influenza A virus (A/Alaska/84(H3N2)) ... 50.1 8e-07
                    gb|AF008862.1|AF008862 Influenza A virus (A/Guizhou/3/(H3N2))... 50.1 8e-07
                    gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 50.1 8e-07
                    gb|AF008859.1|AF008859 Influenza A virus (A/Santiago/7198/94(... 50.1 8e-07
                    gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 50.1 8e-07
                    gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 50.1 8e-07
                    gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 50.1 8e-07
                    gb|AF008852.1|AF008852 Influenza A virus (A/Washington/41/93(... 50.1 8e-07
                    gb|AF008851.1|AF008851 Influenza A virus (A/Wyoming/1/93(H3N2... 50.1 8e-07
                    gb|AF008850.1|AF008850 Influenza A virus (A/Washington/26/93(... 50.1 8e-07
                    gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 50.1 8e-07
                    gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 50.1 8e-07
                    gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 50.1 8e-07
                    gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 50.1 8e-07
                    gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 50.1 8e-07
                    gb|AF008844.1|AF008844 Influenza A virus (A/Stockholm/1/93(H3... 50.1 8e-07
                    gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 50.1 8e-07
                    gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 50.1 8e-07
                    gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 50.1 8e-07
                    gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 50.1 8e-07
                    gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 50.1 8e-07
                    gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 50.1 8e-07
                    gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 50.1 8e-07
                    gb|AF008834.1|AF008834 Influenza A virus (A/Netherlands/372/9... 50.1 8e-07
                    gb|AF008833.1|AF008833 Influenza A virus (A/California/5/93(H... 50.1 8e-07
                    gb|AF008832.1|AF008832 Influenza A virus (A/Vermont/3/94(H3N2... 50.1 8e-07
                    gb|AF008831.1|AF008831 Influenza A virus (A/Romania/182/94(H3... 50.1 8e-07
                    gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 50.1 8e-07
                    gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 50.1 8e-07
                    gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 50.1 8e-07
                    gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 50.1 8e-07
                    gb|AF008826.1|AF008826 Influenza A virus (A/Romania/160/94(H3... 50.1 8e-07
                    gb|AF008825.1|AF008825 Influenza A virus (A/Akita/1/94(H3N2))... 50.1 8e-07
                    gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 50.1 8e-07
                    gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 50.1 8e-07
                    gb|AF008821.1|AF008821 Influenza A virus (A/New_York/13/93(H3... 50.1 8e-07
                    gb|AF008820.1|AF008820 Influenza A virus (A/Shangdong/9/93(H3... 50.1 8e-07
                    gb|AF008819.1|AF008819 Influenza A virus (A/Sapporro/92(H3N2)... 50.1 8e-07
                    gb|AF008818.1|AF008818 Influenza A virus (A/Paris/688/93(H3N2... 50.1 8e-07
                    gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 50.1 8e-07
                    gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 50.1 8e-07
                    gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 50.1 8e-07
                    gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 50.1 8e-07
                    gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 50.1 8e-07
                    gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 50.1 8e-07
                    gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 50.1 8e-07
                    gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 50.1 8e-07
                    gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 50.1 8e-07
                    gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 50.1 8e-07
                    gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 50.1 8e-07
                    gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 50.1 8e-07
                    gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 50.1 8e-07
                    gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 50.1 8e-07
                    gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 50.1 8e-07
                    gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 50.1 8e-07
                    gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 50.1 8e-07
                    gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 50.1 8e-07
                    gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 50.1 8e-07
                    gb|AF008796.1|AF008796 Influenza A virus (A/New_York/42/95(H3... 50.1 8e-07
                    gb|AF008795.1|AF008795 Influenza A virus (A/New_York/16/94(H3... 50.1 8e-07
                    gb|AF008791.1|AF008791 Influenza A virus (A/New_York/17/94(H3... 50.1 8e-07
                    gb|AF008790.1|AF008790 Influenza A virus (A/Argentina/3779/94... 50.1 8e-07
                    gb|AF008788.1|AF008788 Influenza A virus (A/Pennsylvania/7/94... 50.1 8e-07
                    gb|AF008774.1|AF008774 Influenza A virus (A/Johannesburg/33/9... 50.1 8e-07
                    gb|AF008773.1|AF008773 Influenza A virus (A/Hong_Kong/55/94(H... 50.1 8e-07
                    gb|AF008772.1|AF008772 Influenza A virus (A/Hong_Kong/1/94(H3... 50.1 8e-07
                    gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 50.1 8e-07
                    dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 50.1 8e-07
                    dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 50.1 8e-07
                    dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 50.1 8e-07
                    dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 50.1 8e-07
                    dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 8e-07
                    dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 50.1 8e-07
                    dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 50.1 8e-07
                    dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 50.1 8e-07
                    dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 50.1 8e-07
                    gb|CY006891.1| Influenza A virus (A/Memphis/9/80(H3N2)) segme... 50.1 8e-07
                    gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 50.1 8e-07
                    gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 50.1 8e-07
                    dbj|AB043708.1| Influenza A virus (A/Aichi/2/94(H3N2)) HA gen... 50.1 8e-07
                    dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 50.1 8e-07
                    dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 50.1 8e-07
                    dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 50.1 8e-07
                    gb|U08905.1|IVU08905 Influenza virus A/Philippines/2/82/BS/ML... 50.1 8e-07
                    gb|L20102.1|FLAHAHI191 Influenza A virus (A/Hawaii/01/1991 MD... 50.1 8e-07
                    gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 50.1 8e-07
                    gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 50.1 8e-07
                    gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 50.1 8e-07
                    gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 50.1 8e-07
                    gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 50.1 8e-07

                    Comment

                    • #85
                      Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                      Originally posted by gsgs View Post
                      ..and the headline summarizes the abstract.
                      Even if there were strong evidence for short recombinations (<100),
                      there should also be some more longer ones.
                      This is unusual, that I can't find them in human sequences.
                      Here is another tandem set. Its a full list. By now you should see a pattern. Notice the swine sequences appearing (human genes evolve more slowly in swine, which is why 1990 sequences show up a decade later)

                      dbj|AB298687.1| Influenza A virus (A/Memphis/1/71(H3N2)) HA g... 58.0 8e-07
                      gb|EU430047.1| Influenza A virus (A/Shiraz/02/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU430044.1| Influenza A virus (A/Shiraz/05/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU430043.1| Influenza A virus (A/Shiraz/29/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU430042.1| Influenza A virus (A/Shiraz/37/2006(H3N2)) non... 58.0 8e-07
                      gb|EU430041.1| Influenza A virus (A/Shiraz/54/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU430040.1| Influenza A virus (A/Shiraz/13/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU399751.1| Influenza A virus (A/Ontario/1252/2007(H3N2)) ... 58.0 8e-07
                      gb|EU301209.1| Influenza A virus (A/swine/Korea/JNS06/2004(H3... 58.0 8e-07
                      gb|EU311407.1| Influenza A virus (A/Tehran/27/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU311405.1| Influenza A virus (A/Tehran/16/2006(H3N2)) hem... 58.0 8e-07
                      gb|EU045378.1| Influenza A virus (A/swine/Italy/39158/2007(H3... 58.0 8e-07
                      gb|EU045377.1| Influenza A virus (A/swine/Italy/10762/2007(H3... 58.0 8e-07
                      gb|EU045376.1| Influenza A virus (A/swine/Italy/114347/2006(H... 58.0 8e-07
                      gb|EU045375.1| Influenza A virus (A/swine/Italy/120032/2006(H... 58.0 8e-07
                      gb|EU045373.1| Influenza A virus (A/swine/Italy/32242/2006(H3... 58.0 8e-07
                      gb|EU045372.1| Influenza A virus (A/swine/Italy/30574/2005(H3... 58.0 8e-07
                      gb|EU045368.1| Influenza A virus (A/swine/Italy/58356/2004(H3... 58.0 8e-07
                      gb|EU045367.1| Influenza A virus (A/swine/Italy/253025/2003(H... 58.0 8e-07
                      gb|EU045360.1| Influenza A virus (A/swine/Italy/9264/1998(H3N... 58.0 8e-07
                      gb|CY023042.1| Influenza A virus (A/Auckland/600/2000(H3N2)) ... 58.0 8e-07
                      gb|EF626621.1| Influenza A virus (A/Singapore/4/1975(H3N2)) s... 58.0 8e-07
                      gb|EF626619.1| Influenza A virus (A/Phillipines/2/1982(H3N2))... 58.0 8e-07
                      gb|EF626618.1| Influenza A virus (A/Port Chalmers/1/1973(H3N2... 58.0 8e-07
                      gb|EF626617.1| Influenza A virus (A/Memphis/102/1972(H3N2)) s... 58.0 8e-07
                      gb|EF626613.1| Influenza A virus (A/England/42/1972(H3N2)) se... 58.0 8e-07
                      gb|EF626610.1| Influenza A virus (A/Bangkok/1/1979(H3N2)) seg... 58.0 8e-07
                      gb|EF551053.1| Influenza A virus (A/swine/North Carolina/2003... 58.0 8e-07
                      gb|EF551045.1| Influenza A virus (A/turkey/Illinois/2004(H3N2... 58.0 8e-07
                      gb|CY021597.1| Influenza A virus (A/Memphis/3/1971(H3N2)) seg... 58.0 8e-07
                      gb|DQ975262.1| Influenza A virus (A/swine/Italy/1619-2/1999(H... 58.0 8e-07
                      gb|DQ975254.1| Influenza A virus (A/swine/Italy/7/1981(H3N2))... 58.0 8e-07
                      gb|DQ975253.1| Influenza A virus (A/swine/Italy/6/1981(H3N2))... 58.0 8e-07
                      gb|CY020501.1| Influenza A virus (A/swine/Spain/42386/2002(H3... 58.0 8e-07
                      gb|EF456782.1| Influenza A virus (A/England/731/1997(H3N2)) s... 58.0 8e-07
                      gb|CY017299.1| Influenza A virus (A/New York/701/1995(H3N2)) ... 58.0 8e-07
                      gb|CY016483.1| Influenza A virus (A/New York/800/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013789.1| Influenza A virus (A/New York/803/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013773.1| Influenza A virus (A/New York/801/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013765.1| Influenza A virus (A/New York/799/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013757.1| Influenza A virus (A/New York/798/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013749.1| Influenza A virus (A/New York/797/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013741.1| Influenza A virus (A/New York/795/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013725.1| Influenza A virus (A/New York/792/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013709.1| Influenza A virus (A/New York/790/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013677.1| Influenza A virus (A/New York/784/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013653.1| Influenza A virus (A/New York/774/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013629.1| Influenza A virus (A/New York/769/1993(H3N2)) ... 58.0 8e-07
                      gb|CY014151.1| Influenza A virus (A/New York/796/1993(H3N2)) ... 58.0 8e-07
                      gb|CY014143.1| Influenza A virus (A/New York/793/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013781.1| Influenza A virus (A/New York/802/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013733.1| Influenza A virus (A/New York/794/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013717.1| Influenza A virus (A/New York/791/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013701.1| Influenza A virus (A/New York/789/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013693.1| Influenza A virus (A/New York/788/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013685.1| Influenza A virus (A/New York/787/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013669.1| Influenza A virus (A/New York/780/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013661.1| Influenza A virus (A/New York/776/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013645.1| Influenza A virus (A/New York/773/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013637.1| Influenza A virus (A/New York/772/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013621.1| Influenza A virus (A/New York/768/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013613.1| Influenza A virus (A/New York/766/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013605.1| Influenza A virus (A/New York/757/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013319.1| Influenza A virus (A/New York/676/1995(H3N2)) ... 58.0 8e-07
                      gb|CY013311.1| Influenza A virus (A/New York/660/1995(H3N2)) ... 58.0 8e-07
                      gb|CY013208.1| Influenza A virus (A/New York/785/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013200.1| Influenza A virus (A/New York/783/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013192.1| Influenza A virus (A/New York/782/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013184.1| Influenza A virus (A/New York/781/1993(H3N2)) ... 58.0 8e-07
                      gb|CY013176.1| Influenza A virus (A/New York/755/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012968.1| Influenza A virus (A/New York/735/1994(H3N2)) ... 58.0 8e-07
                      gb|CY012928.1| Influenza A virus (A/New York/699/1995(H3N2)) ... 58.0 8e-07
                      gb|CY012784.1| Influenza A virus (A/New York/786/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012776.1| Influenza A virus (A/New York/779/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012768.1| Influenza A virus (A/New York/778/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012760.1| Influenza A virus (A/New York/777/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012752.1| Influenza A virus (A/New York/775/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012744.1| Influenza A virus (A/New York/771/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012728.1| Influenza A virus (A/New York/767/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012520.1| Influenza A virus (A/New York/700/1995(H3N2)) ... 58.0 8e-07
                      gb|CY012504.1| Influenza A virus (A/New York/678/1995(H3N2)) ... 58.0 8e-07
                      gb|CY012496.1| Influenza A virus (A/New York/668/1995(H3N2)) ... 58.0 8e-07
                      gb|DQ470002.1| Influenza A virus (A/turkey/Ontario/31232/2005... 58.0 8e-07
                      gb|DQ469994.1| Influenza A virus (A/swine/Ontario/33853/2005(... 58.0 8e-07
                      gb|DQ469986.1| Influenza A virus (A/swine/Manitoba/12707/2005... 58.0 8e-07
                      gb|DQ469978.1| Influenza A virus (A/swine/British Columbia/28... 58.0 8e-07
                      gb|DQ469970.1| Influenza A virus (A/swine/Alberta/14722/2005(... 58.0 8e-07
                      gb|DQ469962.1| Influenza A virus (A/Ontario/RV1273/2005(H3N2)... 58.0 8e-07
                      gb|CY012184.1| Influenza A virus (A/New York/765/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012176.1| Influenza A virus (A/New York/764/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012168.1| Influenza A virus (A/New York/763/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012160.1| Influenza A virus (A/New York/762/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012152.1| Influenza A virus (A/New York/761/1993(H3N2)) ... 58.0 8e-07
                      gb|CY012136.1| Influenza A virus (A/New York/759/1993(H3N2)) ... 58.0 8e-07
                      gb|CY011976.1| Influenza A virus (A/Waikato/2/2002(H3N2)) seg... 58.0 8e-07
                      gb|CY011840.1| Influenza A virus (A/New York/687/1995(H3N2)) ... 58.0 8e-07
                      gb|CY011816.1| Influenza A virus (A/New York/652/1996(H3N2)) ... 58.0 8e-07
                      gb|CY011552.1| Influenza A virus (A/New York/674/1995(H3N2)) ... 58.0 8e-07
                      gb|CY011536.1| Influenza A virus (A/New York/671/1995(H3N2)) ... 58.0 8e-07
                      gb|CY011512.1| Influenza A virus (A/New York/662/1995(H3N2)) ... 58.0 8e-07
                      gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 58.0 8e-07
                      gb|CY011440.1| Influenza A virus (A/New York/632/1996(H3N2)) ... 58.0 8e-07
                      gb|DQ534421.1| Influenza A virus (A/Rabat/18/97(H3N2)) hemagg... 58.0 8e-07
                      gb|DQ534420.1| Influenza A virus (A/Kenitra/17/97(H3N2)) hema... 58.0 8e-07
                      gb|CY011368.1| Influenza A virus (A/New York/703/1995(H3N2)) ... 58.0 8e-07
                      gb|CY011320.1| Influenza A virus (A/New York/692/1995(H3N2)) ... 58.0 8e-07
                      gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 58.0 8e-07
                      gb|CY011128.1| Influenza A virus (A/New York/599/1996(H3N2)) ... 58.0 8e-07
                      gb|DQ150425.1| Influenza A virus (A/swine/MI/PU243/04 (H3N1))... 58.0 8e-07
                      gb|AF251395.2| Influenza A virus (A/swine/Ontario/00130/97(H3... 58.0 8e-07
                      gb|DQ145537.1| Influenza A virus (A/swine/Minnesota/00395/200... 58.0 8e-07
                      gb|DQ508929.1| Influenza A virus (A/Udorn/307/1972(H3N2)) hem... 58.0 8e-07
                      gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 58.0 8e-07
                      gb|DQ508825.1| Influenza A virus (A/Bangkok/01/1979(H3N2)) he... 58.0 8e-07
                      gb|CY010564.1| Influenza A virus (A/swine/Spain/54008/2004(H3... 58.0 8e-07
                      gb|CY010716.1| Influenza A virus (A/New York/631/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010700.1| Influenza A virus (A/New York/625/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010628.1| Influenza A virus (A/New York/608/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010588.1| Influenza A virus (A/New York/572/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009356.1| Influenza A virus (A/England/72(H3N2)) segment... 58.0 8e-07
                      gb|CY009348.1| Influenza A virus (A/Port Chalmers/73(H3N2)) s... 58.0 8e-07
                      gb|CY010516.1| Influenza A virus (A/New York/617/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010068.1| Influenza A virus (A/New York/600/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010044.1| Influenza A virus (A/New York/594/1996(H3N2)) ... 58.0 8e-07
                      gb|CY010036.1| Influenza A virus (A/New York/592/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009996.1| Influenza A virus (A/New York/562/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009740.1| Influenza A virus (A/New York/590/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009716.1| Influenza A virus (A/New York/587/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009692.1| Influenza A virus (A/New York/581/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009668.1| Influenza A virus (A/New York/574/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009652.1| Influenza A virus (A/New York/566/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009524.1| Influenza A virus (A/New York/583/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009516.1| Influenza A virus (A/New York/579/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009508.1| Influenza A virus (A/New York/575/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009476.1| Influenza A virus (A/New York/565/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009468.1| Influenza A virus (A/New York/564/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009460.1| Influenza A virus (A/New York/560/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009636.1| Influenza A virus (A/Udorn/72(H3N2)) segment 4... 58.0 8e-07
                      gb|CY009908.1| Influenza A virus (A/New York/593/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009900.1| Influenza A virus (A/New York/584/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009700.1| Influenza A virus (A/New York/585/1997(H3N2)) ... 58.0 8e-07
                      gb|CY009684.1| Influenza A virus (A/New York/580/1996(H3N2)) ... 58.0 8e-07
                      gb|CY009644.1| Influenza A virus (A/New York/558/1997(H3N2)) ... 58.0 8e-07
                      gb|CY003752.2| Influenza A virus (A/Nanchang/0074/94(H3N2)) s... 58.0 8e-07
                      gb|CY006203.1| Influenza A virus (A/Nanjing/13/80(H3N2)) segm... 58.0 8e-07
                      gb|CY003744.1| Influenza A virus (A/Hong Kong/7/84(H3N2)) seg... 58.0 8e-07
                      gb|CY003736.1| Influenza A virus (A/Hong Kong/5/83(H3N2)) seg... 58.0 8e-07
                      gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 58.0 8e-07
                      gb|CY003536.1| Influenza A virus (A/Hong Kong/7/85(H3N2)) seg... 58.0 8e-07
                      gb|CY003528.1| Influenza A virus (A/Hong Kong/11/73(H3N2)) se... 58.0 8e-07
                      gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 58.0 8e-07
                      gb|CY003504.1| Influenza A virus (A/Hong Kong/6/85(H3N2)) seg... 58.0 8e-07
                      gb|CY003496.1| Influenza A virus (A/Hong Kong/14/74(H3N2)) se... 58.0 8e-07
                      gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 58.0 8e-07
                      gb|CY003112.1| Influenza A virus (A/New York/405/2002(H3N2)) ... 58.0 8e-07
                      gb|CY002744.1| Influenza A virus (A/Memphis/109/72(H3N2)) seg... 58.0 8e-07
                      gb|DQ159067.1| Influenza A virus (A/Turkey/Canada-Manitoba/NS... 58.0 8e-07
                      gb|DQ159066.1| Influenza A virus (A/Turkey/Canada-Ontario/NS-... 58.0 8e-07
                      gb|DQ159065.1| Influenza A virus (A/Turkey/Canada-Ontario/NS-... 58.0 8e-07
                      gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 58.0 8e-07
                      gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 58.0 8e-07
                      gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 58.0 8e-07
                      gb|AY589652.1| Influenza A virus (A/Cheonnam/340/2002(H3N2)) ... 58.0 8e-07
                      gb|AY589651.1| Influenza A virus (A/Cheonnam/338/2002(H3N2)) ... 58.0 8e-07
                      gb|AY589650.1| Influenza A virus (A/Cheonnam/323/2002(H3N2)) ... 58.0 8e-07
                      gb|AY377546.1| Influenza A virus (A/Finland/250/93(H3N2)) hem... 58.0 8e-07
                      gb|AY377545.1| Influenza A virus (A/Finland/269/93(H3N2)) hem... 58.0 8e-07
                      gb|AY377544.1| Influenza A virus (A/Finland/270/93(H3N2)) hem... 58.0 8e-07
                      gb|AY377543.1| Influenza A virus (A/Finland/273/93(H3N2)) hem... 58.0 8e-07
                      gb|AY377542.1| Influenza A virus (A/Finland/331/93(H3N2)) hem... 58.0 8e-07
                      gb|AY377541.1| Influenza A virus (A/Finland/321/93(H3N2)) hem... 58.0 8e-07
                      gb|AF534022.1| Influenza A virus (A/Buenos Aires/4634/96(H3N2... 58.0 8e-07
                      gb|AF534018.1| Influenza A virus (A/Buenos Aires/4102/95(H3N2... 58.0 8e-07
                      gb|AF534017.1| Influenza A virus (A/Buenos Aires/4098/95(H3N2... 58.0 8e-07
                      gb|AF534016.1| Influenza A virus (A/Buenos Aires/4084/95(H3N2... 58.0 8e-07
                      gb|AF534015.1| Influenza A virus (A/Buenos Aires/4065/95(H3N2... 58.0 8e-07
                      gb|AF534014.1| Influenza A virus (A/Buenos Aires/4064/95(H3N2... 58.0 8e-07
                      gb|AF534013.1| Influenza A virus (A/Buenos Aires/4057/95(H3N2... 58.0 8e-07
                      gb|AF442483.1| Influenza A virus (A/Finland/280/93(H3N2)) hem... 58.0 8e-07
                      gb|AY462237.1| Influenza A virus (A/Finland/256/93(H3N2)) hem... 58.0 8e-07
                      gb|U77830.1|IAU77830 Influenza A virus (A/Christ Hospital/231... 58.0 8e-07
                      gb|AY137206.1| Influenza A virus (A/Guangdong/28/94(H3N2)) he... 58.0 8e-07
                      gb|AY377129.1| Influenza A virus (A/Gyeongbuk/2/02(H3N2)) hem... 58.0 8e-07
                      gb|CY002496.1| Influenza A virus (A/Memphis/1/71(H3N2)) segme... 58.0 8e-07
                      gb|DQ141307.1| Influenza A virus (A/swine/Canada-BC/1A/05(H3)... 58.0 8e-07
                      gb|CY002272.1| Influenza A virus (A/Memphis/24/95(H3N2)) segm... 58.0 8e-07
                      gb|DQ132433.1| Influenza A virus (A/turkey/Canada-BC/NS-01529... 58.0 8e-07
                      gb|CY008676.1| Influenza A virus (A/Memphis/101/72(H3N2)) seg... 58.0 8e-07
                      gb|CY009068.1| Influenza A virus (A/Memphis/2/85(H3N2)) segme... 58.0 8e-07
                      gb|CY009052.1| Influenza A virus (A/Memphis/33/83(H3N2)) segm... 58.0 8e-07
                      gb|CY009012.1| Influenza A virus (A/Nanchang/12/93(H3N2)) seg... 58.0 8e-07
                      gb|CY009004.1| Influenza A virus (A/Hong Kong/33/73(H3N2)) se... 58.0 8e-07
                      gb|CY002096.1| Influenza A virus (A/Memphis/102/72(H3N2)) seg... 58.0 8e-07
                      gb|CY002088.1| Influenza A virus (A/Memphis/66/86(H3N2)) segm... 58.0 8e-07
                      gb|CY003720.1| Influenza A virus (A/Hong Kong/26/83(H3N2)) se... 58.0 8e-07
                      gb|CY006811.1| Influenza A virus (A/Memphis/3/73(H3N2)) segme... 58.0 8e-07
                      gb|AY661210.1| Influenza A virus (A/Nice/491/97(H3N2)) hemagg... 58.0 8e-07
                      gb|AY661209.1| Influenza A virus (A/Netherlands/5/98(H3N2)) h... 58.0 8e-07
                      gb|AY661202.1| Influenza A virus (A/Hongkong/1/97(H3N2)) hema... 58.0 8e-07
                      gb|AY661200.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
                      gb|AY661199.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
                      gb|AY661198.1| Influenza A virus (A/Singapore/1/96(H3N2)) hem... 58.0 8e-07
                      gb|AY661197.1| Influenza A virus (A/Brisbane/8/96(H3N2)) hema... 58.0 8e-07
                      gb|AY661195.1| Influenza A virus (A/Geneva/3958/96(H3N2)) hem... 58.0 8e-07
                      gb|AY661193.1| Influenza A virus (A/Hongkong/20/96(H3N2)) hem... 58.0 8e-07
                      gb|AY661190.1| Influenza A virus (A/Wuhan/359/95(H3N2)) hemag... 58.0 8e-07
                      gb|AY661189.1| Influenza A virus (A/Hongkong/55/95(H3N2)) hem... 58.0 8e-07
                      gb|AY661187.1| Influenza A virus (A/Hongkong/49/95(H3N2)) hem... 58.0 8e-07
                      gb|AY661186.1| Influenza A virus (A/Hongkong/38/95(H3N2)) hem... 58.0 8e-07
                      gb|AY661185.1| Influenza A virus (A/Hongkong/32/95(H3N2)) hem... 58.0 8e-07
                      gb|AY661183.1| Influenza A virus (A/Finland/338/95 (H3N2)) he... 58.0 8e-07
                      gb|AY661182.1| Influenza A virus (A/Geneva/AI9509/95(H3N2)) h... 58.0 8e-07
                      gb|AY661168.1| Influenza A virus (A/Lyon/672/93(H3N2)) hemagg... 58.0 8e-07
                      gb|AY661161.1| Influenza A virus (A/Stockholm/20/93(H3N2)) he... 58.0 8e-07
                      gb|AY661158.1| Influenza A virus (A/Wellington/59/93(H3N2)) h... 58.0 8e-07
                      gb|AY661155.1| Influenza A virus (A/Akita/4/93(H3N2)) hemaggl... 58.0 8e-07
                      gb|AY661151.1| Influenza A virus (A/Madrid/G252/93(H3N2)) hem... 58.0 8e-07
                      gb|AY661149.1| Influenza A virus (A/Netherlands/179/93(H3N2))... 58.0 8e-07
                      gb|AY661147.1| Influenza A virus (A/Madrid/G122/93(H3N2)) hem... 58.0 8e-07
                      gb|AY661145.1| Influenza A virus (A/Madrid/G109/93(H3N2)) hem... 58.0 8e-07
                      gb|AY661141.1| Influenza A virus (A/Netherlands/126/93 (H3N2)... 58.0 8e-07
                      gb|AY661140.1| Influenza A virus (A/Netherlands/115/93 (H3N2)... 58.0 8e-07
                      gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 58.0 8e-07
                      gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 58.0 8e-07
                      gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 58.0 8e-07
                      gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 58.0 8e-07
                      gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 58.0 8e-07
                      gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 58.0 8e-07
                      gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 58.0 8e-07
                      gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 58.0 8e-07
                      gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 58.0 8e-07
                      gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 58.0 8e-07
                      gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 58.0 8e-07
                      gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 58.0 8e-07
                      gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 58.0 8e-07
                      gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 58.0 8e-07
                      gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 58.0 8e-07
                      gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 58.0 8e-07
                      gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 58.0 8e-07
                      gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 58.0 8e-07
                      gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 58.0 8e-07
                      gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 58.0 8e-07
                      gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 58.0 8e-07
                      gb|AY661051.1| Influenza A virus (A/Guildford/V728/85(H3N2)) ... 58.0 8e-07
                      gb|AY661050.1| Influenza A virus (A/Wellington/4/85(H3N2)) he... 58.0 8e-07
                      gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 58.0 8e-07
                      gb|AY661047.1| Influenza A virus (A/Netherlands/209/80(H3N2))... 58.0 8e-07
                      gb|AY661046.1| Influenza A virus (A/Rotterdam/577/80(H3N2)) h... 58.0 8e-07
                      gb|AY661042.1| Influenza A virus (A/Bilthoven/5930/74(H3N2)) ... 58.0 8e-07
                      gb|AY661041.1| Influenza A virus (A/Bilthoven/21793/72(H3N2))... 58.0 8e-07
                      gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 58.0 8e-07
                      gb|AY661025.1| Influenza A virus (A/Netherlands/233/82(H3N2))... 58.0 8e-07
                      gb|AY661018.1| Influenza A virus (A/Bilthoven/5146/74(H3N2)) ... 58.0 8e-07
                      gb|AY661017.1| Influenza A virus (A/Bilthoven/5931/74(H3N2)) ... 58.0 8e-07
                      gb|AY661016.1| Influenza A virus (A/Oslo/13676/83(H3N2)) hema... 58.0 8e-07
                      gb|AY661015.1| Influenza A virus (A/Bilthoven/10684/82(H3N2))... 58.0 8e-07
                      gb|AY661014.1| Influenza A virus (A/Bilthoven/4791/81(H3N2)) ... 58.0 8e-07
                      gb|AY661005.1| Influenza A virus (A/Bilthoven/9459/74(H3N2)) ... 58.0 8e-07
                      gb|AY661004.1| Influenza A virus (A/Bilthoven/3517/73(H3N2)) ... 58.0 8e-07
                      gb|AY661003.1| Influenza A virus (A/Bilthoven/748/73(H3N2)) h... 58.0 8e-07
                      gb|AY661002.1| Influenza A virus (A/Bilthoven/552/73(H3N2)) h... 58.0 8e-07
                      gb|AY661000.1| Influenza A virus (A/Bilthoven/23290/72(H3N2))... 58.0 8e-07
                      gb|AY660999.1| Influenza A virus (A/Bilthoven/6022/72(H3N2)) ... 58.0 8e-07
                      gb|AY660998.1| Influenza A virus (A/Bilthoven/21801/71(H3N2))... 58.0 8e-07
                      gb|AY660997.1| Influenza A virus (A/Bilthoven/21438/71(H3N2))... 58.0 8e-07
                      gb|AF525217.1| Influenza A virus (A/Guangdong/04/96 (H3N2)) h... 58.0 8e-07
                      gb|AF525218.1| Influenza A virus (A/Guangdong/01/95 (H3N2)) h... 58.0 8e-07
                      gb|AF525219.1| Influenza A virus (A/Guangdong/08/95 (H3N2)) h... 58.0 8e-07
                      gb|AF525686.1| Influenza A virus (A/Guangdong/08/96(H3N2)) he... 58.0 8e-07
                      gb|CY006331.2| Influenza A virus (A/Nanchang/A2/94(H3N2)) seg... 58.0 8e-07
                      gb|CY008660.1| Influenza A virus (A/Memphis/1/80(H3N2)) segme... 58.0 8e-07
                      gb|CY008708.1| Influenza A virus (A/Memphis/7/85(H3N2)) segme... 58.0 8e-07
                      gb|CY008716.1| Influenza A virus (A/Memphis/11/86(H3N2)) segm... 58.0 8e-07
                      gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 58.0 8e-07
                      gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 58.0 8e-07
                      gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 58.0 8e-07
                      gb|AF368446.1| Influenza A virus (A/Oslo/244/97 (H3N2)) hemag... 58.0 8e-07
                      gb|AF368445.1| Influenza A virus (A/Oslo/185/97 (H3N2)) hemag... 58.0 8e-07
                      gb|AF368444.1| Influenza A virus (A/Oslo/21/97 (H3N2)) hemagg... 58.0 8e-07
                      gb|AF368443.1| Influenza A virus (A/Finland/532/97 (H3N2)) he... 58.0 8e-07
                      gb|AF368442.1| Influenza A virus (A/Finland/529/97 (H3N2)) he... 58.0 8e-07
                      gb|AF368441.1| Influenza A virus (A/Finland/528/97 (H3N2)) he... 58.0 8e-07
                      gb|AF368440.1| Influenza A virus (A/Finland/524/97 (H3N2)) he... 58.0 8e-07
                      gb|AF368439.1| Influenza A virus (A/Finland/460/97 (H3N2)) he... 58.0 8e-07
                      gb|AF368438.1| Influenza A virus (A/Finland/447/96 (H3N2)) he... 58.0 8e-07
                      gb|AF368436.1| Influenza A virus (A/Finland/338/95 (H3N2)) he... 58.0 8e-07
                      gb|CY008684.1| Influenza A virus (A/Memphis/105/72(H3N2)) seg... 58.0 8e-07
                      gb|AF405212.1| Influenza A virus (A/Oregon/4/80(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405211.1| Influenza A virus (A/Baylor5B/85(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405210.1| Influenza A virus (A/Baylor4A/83(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405209.1| Influenza A virus (A/Baylor3A/83(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405208.1| Influenza A virus (A/Baylor2A/81(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405207.1| Influenza A virus (A/Baylor1B/83(H3N2)) hemagg... 58.0 8e-07
                      gb|AF405206.1| Influenza A virus (A/Baylor1A/81(H3N2)) hemagg... 58.0 8e-07
                      gb|AF363504.1| Influenza A virus (A/Paris/908/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF363503.1| Influenza A virus (A/Paris/906/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF363502.1| Influenza A virus (A/Paris/896/97(H3N2)) hemag... 58.0 8e-07
                      dbj|D00931.1|FLA6476HA Influenza A virus (A/duck/Hong Kong/64... 58.0 8e-07
                      dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 58.0 8e-07
                      dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 58.0 8e-07
                      gb|AF357962.1|AF357962 Influenza A virus (A/Madrid/SO1747/98(... 58.0 8e-07
                      gb|AF357938.1|AF357938 Influenza A virus (A/Granada/R198/96(H... 58.0 8e-07
                      gb|AY262745.1| Influenza A virus (A/Finland/300/93(H3N2)) hae... 58.0 8e-07
                      emb|Z46411.1| Influenza A virus (A/Madrid/252/1993(H3N2)) mRN... 58.0 8e-07
                      emb|Z46394.1| Influenza A virus (A/England/247/1993(H3N2)) mR... 58.0 8e-07
                      emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 58.0 8e-07
                      emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 58.0 8e-07
                      emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 58.0 8e-07
                      emb|Z46406.1| Influenza A virus (A/Guangdong/25/1993(H3N2)) m... 58.0 8e-07
                      emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 58.0 8e-07
                      emb|Z46408.1| Influenza A virus (A/Hong Kong/2/1994(H3N2)) mR... 58.0 8e-07
                      emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 58.0 8e-07
                      gb|CY008172.1| Influenza A virus (A/Nanjing/28/84(H3N2)) segm... 58.0 8e-07
                      gb|CY008468.1| Influenza A virus (A/Memphis/3/80(H3N2)) segme... 58.0 8e-07
                      gb|CY008460.1| Influenza A virus (A/Memphis/103/72(H3N2)) seg... 58.0 8e-07
                      gb|CY008452.1| Influenza A virus (A/Memphis/5/85(H3N2)) segme... 58.0 8e-07
                      emb|V01089.1|ORIN15 Influenza A virus (A/Memphis/102/72(H3N2)... 58.0 8e-07
                      gb|AF008894.1|AF008894 Influenza A virus (A/Baylor5A/Texas/12... 58.0 8e-07
                      gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 58.0 8e-07
                      gb|AF008891.1|AF008891 Influenza A virus (A/Baylor3B/Texas/24... 58.0 8e-07
                      gb|AF380346.1|AF380346 Influenza A virus (A/England/42/72.var... 58.0 8e-07
                      gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 58.0 8e-07
                      gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 58.0 8e-07
                      gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 58.0 8e-07
                      gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 58.0 8e-07
                      gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 58.0 8e-07
                      gb|AF386605.1|AF386605 Influenza A virus (A/Seoul/16/89(H3N2)... 58.0 8e-07
                      gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 58.0 8e-07
                      emb|AJ311511.1|INA311511 Influenza A virus partial HA gene fo... 58.0 8e-07
                      emb|AJ293933.1|IVI293933 Influenza A virus (A/Swine/Cote d'Ar... 58.0 8e-07
                      emb|AJ293932.1|IVI293932 Influenza A virus (A/swine/Italy/151... 58.0 8e-07
                      emb|AJ293930.1|IVI293930 Influenza A virus (A/swine/Italy/146... 58.0 8e-07
                      gb|AF311680.1|AF311680 Influenza A virus (A/Finland/572/98(H3... 58.0 8e-07
                      gb|AF311679.1|AF311679 Influenza A virus (A/Finland/571/98(H3... 58.0 8e-07
                      gb|AF311678.1|AF311678 Influenza A virus (A/Finland/445/96(H3... 58.0 8e-07
                      gb|AF311676.1|AF311676 Influenza A virus (A/Finland/539/97(H3... 58.0 8e-07
                      gb|AF315567.1|AF315567 Influenza A virus (A/Greece/1/97 (H3N2... 58.0 8e-07
                      gb|AF315561.1|AF315561 Influenza A virus (A/Athens/94/98 (H3N... 58.0 8e-07
                      gb|AF268126.1|AF268126 Influenza A virus (A/Swine/Wisconsin/1... 58.0 8e-07
                      gb|AF268124.1|AF268124 Influenza A virus (A/Swine/Illinois/21... 58.0 8e-07
                      gb|AF268123.1|AF268123 Influenza A virus (A/Swine/Oklahoma/18... 58.0 8e-07
                      gb|AF233691.1|AF233691 Influenza A virus (A/Philippines/2/82(... 58.0 8e-07
                      gb|AF201845.1|AF201845 Influenza A virus (A/Praha/2/83(HI plu... 58.0 8e-07
                      gb|AF201844.1|AF201844 Influenza A virus (A/Belgium/2/81) hem... 58.0 8e-07
                      gb|AF201843.1|AF201843 Influenza A virus (A/BANGKOK/1/79) hem... 58.0 8e-07
                      gb|AF201842.1|AF201842 Influenza A virus (A/Dunedin/4/73) hem... 58.0 8e-07
                      gb|AF201875.1|AF201875 Influenza A virus (A/England/42/72(H3N... 58.0 8e-07
                      gb|DQ335771.1| Influenza A virus (A/turkey/Ohio/313053/04(H3N... 58.0 8e-07
                      gb|CY007835.1| Influenza A virus (A/Nanchang/A1/94(H3N2)) seg... 58.0 8e-07
                      gb|CY007971.1| Influenza A virus (A/Guandong/243/72(H3N2)) se... 58.0 8e-07
                      gb|AF092063.1|AF092063 Influenza A virus (A/Wellington/4/85) ... 58.0 8e-07
                      gb|AF092062.1|AF092062 Influenza A virus (A/Port Chalmers/1/7... 58.0 8e-07
                      gb|AF180661.1| Influenza A virus (A/Brazil/597/96(H3N2)) hema... 58.0 8e-07
                      gb|AF180660.1| Influenza A virus (A/Brazil/184/96(H3N2)) hema... 58.0 8e-07
                      gb|AF180659.1| Influenza A virus (A/Brazil/45/96(H3N2)) hemag... 58.0 8e-07
                      gb|AF180658.1| Influenza A virus (A/Brazil/3/96(H3N2)) hemagg... 58.0 8e-07
                      gb|AF180656.1| Influenza A virus (A/Rhode Island/7/97(H3N2)) ... 58.0 8e-07
                      gb|AF180655.1| Influenza A virus (A/Guadeloupe/39/96(H3N2)) h... 58.0 8e-07
                      gb|AF180654.1| Influenza A virus (A/France/75/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF180653.1| Influenza A virus (A/Guam/1014/96(H3N2)) hemag... 58.0 8e-07
                      gb|AF180652.1| Influenza A virus (A/thailand/94/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180651.1| Influenza A virus (A/Brazil/309/96(H3N2)) hema... 58.0 8e-07
                      gb|AF180650.1| Influenza A virus (A/New York/37/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180649.1| Influenza A virus (A/Brazil/43/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF180648.1| Influenza A virus (A/Brazil/51/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF180647.1| Influenza A virus (A/Canada/101/97(H3N2)) hema... 58.0 8e-07
                      gb|AF180646.1| Influenza A virus (A/Moscow/2/97(H3N2)) hemagg... 58.0 8e-07
                      gb|AF180645.1| Influenza A virus (A/Missouri/11/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180644.1| Influenza A virus (A/Pennsylvania/2/97(H3N2)) ... 58.0 8e-07
                      gb|AF180643.1| Influenza A virus (A/Johannesburg/10/97(H3N2))... 58.0 8e-07
                      gb|AF180640.1| Influenza A virus (A/Minnesota/1/97(H3N2)) hem... 58.0 8e-07
                      gb|AF180639.1| Influenza A virus (A/New York/43/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180638.1| Influenza A virus (A/New York/50/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180637.1| Influenza A virus (A/Missouri/10/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180636.1| Influenza A virus (A/California/13/96(H3N2)) h... 58.0 8e-07
                      gb|AF180635.1| Influenza A virus (A/Texas/9/96(H3N2)) hemaggl... 58.0 8e-07
                      gb|AF180630.1| Influenza A virus (A/Bangkok/1/97(H3N2)) hemag... 58.0 8e-07
                      gb|AF180628.1| Influenza A virus (A/Nanchang/813/95(H3N2)) he... 58.0 8e-07
                      gb|AF180627.1| Influenza A virus (A/Montevideo/318/96(H3N2)) ... 58.0 8e-07
                      gb|AF180626.1| Influenza A virus (A/Delaware/4/97(H3N2)) hema... 58.0 8e-07
                      gb|AF180625.1| Influenza A virus (A/Minnesota/1/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180624.1| Influenza A virus (A/Caracas/465/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180623.1| Influenza A virus (A/Caracas/422/97(H3N2)) hem... 58.0 8e-07
                      gb|AF180622.1| Influenza A virus (A/Yokohama/68/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180619.1| Influenza A virus (A/Guangdong/1/96(H3N2)) hem... 58.0 8e-07
                      gb|AF180567.1| Influenza A virus (A/Louisiana/1/93(H3N2)) hem... 58.0 8e-07
                      gb|AF180565.1| Influenza A virus (A/Hebei/12/93(H3N2)) hemagg... 58.0 8e-07
                      gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 58.0 8e-07
                      dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 58.0 8e-07
                      dbj|AB019357.1| Influenza A virus (A/Nagasaki/97/95(H3N2)) HA... 58.0 8e-07
                      dbj|AB019354.1| Influenza A virus (A/Nagasaki/48/95(H3N2)) HA... 58.0 8e-07
                      dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 58.0 8e-07
                      dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 58.0 8e-07
                      dbj|D30668.1|FLAH5 Influenza A virus (A/Hebei/12/93(H3N2)) ge... 58.0 8e-07
                      gb|AF008906.1|AF008906 Influenza A virus (A/Tonga/23/85(H3N2)... 58.0 8e-07
                      gb|AF008904.1|AF008904 Influenza A virus (A/Yokohama/C5/85(H3... 58.0 8e-07
                      gb|AF008902.1|AF008902 Influenza A virus (A/Yamagata/96/85(H3... 58.0 8e-07
                      gb|AF008901.1|AF008901 Influenza A virus (A/Bangkok/25/(H3N2)... 58.0 8e-07
                      gb|AF008900.1|AF008900 Influenza A virus (A/Gumma/346/(H3N2))... 58.0 8e-07
                      gb|AF008899.1|AF008899 Influenza A virus (A/Bangkok/(H3N2)) h... 58.0 8e-07
                      gb|AF008898.1|AF008898 Influenza A virus (A/Stockholm/8/(H3N2... 58.0 8e-07
                      gb|AF008897.1|AF008897 Influenza A virus (A/Czechoslovakia/4/... 58.0 8e-07
                      gb|AF008896.1|AF008896 Influenza A virus (A/Christ_Church/4/(... 58.0 8e-07
                      gb|AF008895.1|AF008895 Influenza A virus (A/Christ_Church/1/(... 58.0 8e-07
                      gb|AF008893.1|AF008893 Influenza A virus (A/Mississippi/1/(H3... 58.0 8e-07
                      gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 58.0 8e-07
                      gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 58.0 8e-07
                      gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 58.0 8e-07
                      gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 58.0 8e-07
                      gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 58.0 8e-07
                      gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 58.0 8e-07
                      gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 58.0 8e-07
                      gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 58.0 8e-07
                      gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 58.0 8e-07
                      gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 58.0 8e-07
                      gb|AF008879.1|AF008879 Influenza A virus (A/Tokyo/1276/(H3N2)... 58.0 8e-07
                      gb|AF008878.1|AF008878 Influenza A virus (A/Tokyo/1275/(H3N2)... 58.0 8e-07
                      gb|AF008877.1|AF008877 Influenza A virus (A/Yamaneshi/497/(H3... 58.0 8e-07
                      gb|AF008876.1|AF008876 Influenza A virus (A/Fukuoka/C29/(H3N2... 58.0 8e-07
                      gb|AF008875.1|AF008875 Influenza A virus (A/Connecticut/4/(H3... 58.0 8e-07
                      gb|AF008874.1|AF008874 Influenza A virus (A/Texas/24752/(H3N2... 58.0 8e-07
                      gb|AF008873.1|AF008873 Influenza A virus (A/New_Jersey/4/(H3N... 58.0 8e-07
                      gb|AF008872.1|AF008872 Influenza A virus (A/Michigan/1/(H3N2)... 58.0 8e-07
                      gb|AF008871.1|AF008871 Influenza A virus (A/Texas/17988/84(H3... 58.0 8e-07
                      gb|AF008870.1|AF008870 Influenza A virus (A/Texas/18733/84(H3... 58.0 8e-07
                      gb|AF008869.1|AF008869 Influenza A virus (A/Texas/18088/84(H3... 58.0 8e-07
                      gb|AF008868.1|AF008868 Influenza A virus (A/Oita/3/83(H3N2)) ... 58.0 8e-07
                      gb|AF008867.1|AF008867 Influenza A virus (A/Caen/1/84(H3N2)) ... 58.0 8e-07
                      gb|AF008860.1|AF008860 Influenza A virus (A/New_York/15/94(H3... 58.0 8e-07
                      gb|AF008858.1|AF008858 Influenza A virus (A/Wuzhou/1/94(H3N2)... 58.0 8e-07
                      gb|AF008856.1|AF008856 Influenza A virus (A/Harbin/3/94(H3N2)... 58.0 8e-07
                      gb|AF008855.1|AF008855 Influenza A virus (A/California/4/94(H... 58.0 8e-07
                      gb|AF008854.1|AF008854 Influenza A virus (A/Waikato/20/93(H3N... 58.0 8e-07
                      gb|AF008853.1|AF008853 Influenza A virus (A/Ulan_Ude/44/94(H3... 58.0 8e-07
                      gb|AF008849.1|AF008849 Influenza A virus (A/North_Carolina/93... 58.0 8e-07
                      gb|AF008848.1|AF008848 Influenza A virus (A/Guangdong/27/94(H... 58.0 8e-07
                      gb|AF008847.1|AF008847 Influenza A virus (A/New_York/38/93(H3... 58.0 8e-07
                      gb|AF008846.1|AF008846 Influenza A virus (A/Texas/57/93(H3N2)... 58.0 8e-07
                      gb|AF008845.1|AF008845 Influenza A virus (A/New_York/3/93(H3N... 58.0 8e-07
                      gb|AF008843.1|AF008843 Influenza A virus (A/Spain/190/93(H3N2... 58.0 8e-07
                      gb|AF008842.1|AF008842 Influenza A virus (A/Spain/125/93(H3N2... 58.0 8e-07
                      gb|AF008841.1|AF008841 Influenza A virus (A/Georgia/3/93(H3N2... 58.0 8e-07
                      gb|AF008840.1|AF008840 Influenza A virus (A/England/220/93(H3... 58.0 8e-07
                      gb|AF008839.1|AF008839 Influenza A virus (A/New_York/26/93(H3... 58.0 8e-07
                      gb|AF008838.1|AF008838 Influenza A virus (A/Alaska/18/93(H3N2... 58.0 8e-07
                      gb|AF008837.1|AF008837 Influenza A virus (A/Christ_Church/8/9... 58.0 8e-07
                      gb|AF008836.1|AF008836 Influenza A virus (A/Ann_Arbor/3/93(H3... 58.0 8e-07
                      gb|AF008830.1|AF008830 Influenza A virus (A/Louisiana/6/93(H3... 58.0 8e-07
                      gb|AF008829.1|AF008829 Influenza A virus (A/Louisiana/4/93(H3... 58.0 8e-07
                      gb|AF008828.1|AF008828 Influenza A virus (A/Guangdong/25/93(H... 58.0 8e-07
                      gb|AF008827.1|AF008827 Influenza A virus (A/Argentina/3105/93... 58.0 8e-07
                      gb|AF008824.1|AF008824 Influenza A virus (A/Hong_Kong/23/92(H... 58.0 8e-07
                      gb|AF008822.1|AF008822 Influenza A virus (A/Nanchang/3396/93(... 58.0 8e-07
                      gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 58.0 8e-07
                      gb|AF008809.1|AF008809 Influenza A virus (A/Harbin/15/92(H3N2... 58.0 8e-07
                      gb|AF008808.1|AF008808 Influenza A virus (A/Guangdong/4/93(H3... 58.0 8e-07
                      gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 58.0 8e-07
                      gb|AF008806.1|AF008806 Influenza A virus (A/Sichuan/4/93(H3N2... 58.0 8e-07
                      gb|AF008805.1|AF008805 Influenza A virus (A/Wuzhou/4/93(H3N2)... 58.0 8e-07
                      gb|AF008804.1|AF008804 Influenza A virus (A/Russia/58/93(H3N2... 58.0 8e-07
                      gb|AF008803.1|AF008803 Influenza A virus (A/Nanchang/58/93(H3... 58.0 8e-07
                      gb|AF008802.1|AF008802 Influenza A virus (A/Nanchang/3332/93(... 58.0 8e-07
                      gb|AF008801.1|AF008801 Influenza A virus (A/Nangchang/12/93(H... 58.0 8e-07
                      gb|AF008767.1|AF008767 Influenza A virus (A/Virginia/25/94(H3... 58.0 8e-07
                      gb|AF008766.1|AF008766 Influenza A virus (A/Guangxi/42/95(H3N... 58.0 8e-07
                      gb|AF008765.1|AF008765 Influenza A virus (A/CNIC/22/95(H3N2))... 58.0 8e-07
                      gb|AF008764.1|AF008764 Influenza A virus (A/Argentina/4057/95... 58.0 8e-07
                      gb|AF008763.1|AF008763 Influenza A virus (A/Shangdong/5/94(H3... 58.0 8e-07
                      gb|AF008762.1|AF008762 Influenza A virus (A/Beijing/281/94(H3... 58.0 8e-07
                      gb|AF008761.1|AF008761 Influenza A virus (A/Washington/186/94... 58.0 8e-07
                      gb|AF008760.1|AF008760 Influenza A virus (A/Canada/147/95(H3N... 58.0 8e-07
                      gb|AF008759.1|AF008759 Influenza A virus (A/Hong_Kong/38/95(H... 58.0 8e-07
                      gb|AF008758.1|AF008758 Influenza A virus (A/Singapore/28/95(H... 58.0 8e-07
                      gb|AF008757.1|AF008757 Influenza A virus (A/New_Jersey/11/94(... 58.0 8e-07
                      gb|AF008756.1|AF008756 Influenza A virus (A/Singapore/27/95(H... 58.0 8e-07
                      gb|AF008755.1|AF008755 Influenza A virus (A/Hong_Kong/3/95(H3... 58.0 8e-07
                      gb|AF008754.1|AF008754 Influenza A virus (A/Germany/767/95(H3... 58.0 8e-07
                      gb|AF008753.1|AF008753 Influenza A virus (A/West_Virginia/1/9... 58.0 8e-07
                      gb|AF008752.1|AF008752 Influenza A virus (A/Germany/578652/95... 58.0 8e-07
                      gb|AF008750.1|AF008750 Influenza A virus (A/Nebraska/11/95(H3... 58.0 8e-07
                      gb|AF008749.1|AF008749 Influenza A virus (A/Kwangju/1/95(H3N2... 58.0 8e-07
                      gb|AF008748.1|AF008748 Influenza A virus (A/Alaska/10/95(H3N2... 58.0 8e-07
                      dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 58.0 8e-07
                      dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 58.0 8e-07
                      dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 58.0 8e-07
                      dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 58.0 8e-07
                      dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 58.0 8e-07
                      dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 58.0 8e-07
                      dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 58.0 8e-07
                      dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 58.0 8e-07
                      dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 58.0 8e-07
                      gb|AF131998.1|AF131998 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
                      gb|AF131997.1|AF131997 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
                      gb|AF131996.1|AF131996 Influenza A virus (A/Lyon/1781/96 (H3N... 58.0 8e-07
                      gb|CY006891.1| Influenza A virus (A/Memphis/9/80(H3N2)) segme... 58.0 8e-07
                      gb|CY006907.1| Influenza A virus (A/Hong Kong/49/74(H3N2)) se... 58.0 8e-07
                      gb|CY007627.1| Influenza A virus (A/Memphis/1/81(H3N2)) segme... 58.0 8e-07
                      gb|CY007619.1| Influenza A virus (A/Memphis/4/80(H3N2)) segme... 58.0 8e-07
                      gb|U65559.1|IAU65559 Influenza A virus H3N2 strain A/Niigata/... 58.0 8e-07
                      gb|U65558.1|IAU65558 Influenza A virus H3N2 strain A/Ibaraki/... 58.0 8e-07
                      gb|U65556.1|IAU65556 Influenza A virus H3N2 strain A/Kagoshim... 58.0 8e-07
                      gb|U65555.1|IAU65555 Influenza A virus H3N2 strain A/Gifu/2/9... 58.0 8e-07
                      gb|U65552.1|IAU65552 Influenza A virus H3N2 strain A/Saga/447... 58.0 8e-07
                      dbj|AB043707.1| Influenza A virus (A/Aichi/4/93(H3N2)) HA gen... 58.0 8e-07
                      gb|U65554.1|IAU65554 Influenza A virus H3N2 strain A/Tochigi/... 58.0 8e-07
                      gb|U08905.1|IVU08905 Influenza virus A/Philippines/2/82/BS/ML... 58.0 8e-07
                      gb|AF038268.1|AF038268 Influenza A virus H3N2 A/Wuhan/359/95 ... 58.0 8e-07
                      gb|AF038267.1|AF038267 Influenza A virus H3N2 A/Niigata/137/9... 58.0 8e-07
                      gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 58.0 8e-07
                      gb|CY006219.1| Influenza A virus (A/Memphis/2/71(H3N2)) segme... 58.0 8e-07
                      gb|AF008731.1|AF008731 Influenza A virus (A/Wisconsin/3/96(H3... 58.0 8e-07
                      gb|AF008730.1|AF008730 Influenza A virus (A/Taiwan/523/96(H3N... 58.0 8e-07
                      gb|AF008729.1|AF008729 Influenza A virus (A/Washington/5/96(H... 58.0 8e-07
                      gb|AF008728.1|AF008728 Influenza A virus (A/Shanghai/9/95(H3N... 58.0 8e-07
                      gb|AF008727.1|AF008727 Influenza A virus (A/New_York/9/96(H3N... 58.0 8e-07
                      gb|AF008726.1|AF008726 Influenza A virus (A/Fujian/47/96(H3N2... 58.0 8e-07
                      gb|AF008725.1|AF008725 Influenza A virus (A/Nanchang/933/95(H... 58.0 8e-07
                      gb|AF008723.1|AF008723 Influenza A virus (A/Alaska/2/96(H3N2)... 58.0 8e-07
                      gb|AF008722.1|AF008722 Influenza A virus (A/Wuhan/359/95(H3N2... 58.0 8e-07
                      gb|AF008721.1|AF008721 Influenza A virus (A/CNIC/35/96(H3N2))... 58.0 8e-07
                      gb|AF008720.1|AF008720 Influenza A virus (A/Brisbane/22/96(H3... 58.0 8e-07
                      gb|AF008719.1|AF008719 Influenza A virus (A/Wellington/48/96(... 58.0 8e-07
                      gb|AF008718.1|AF008718 Influenza A virus (A/Hawaii/2/96(H3N2)... 58.0 8e-07
                      gb|AF008717.1|AF008717 Influenza A virus (A/Christ_Church/1/9... 58.0 8e-07
                      gb|AF008716.1|AF008716 Influenza A virus (A/Brisbane/35/96(H3... 58.0 8e-07
                      gb|AF008715.1|AF008715 Influenza A virus (A/Auckland/9/96(H3N... 58.0 8e-07
                      gb|AF008714.1|AF008714 Influenza A virus (A/Auckland/5/96(H3N... 58.0 8e-07
                      gb|AF008707.1|AF008707 Influenza A virus (A/Guangzhou/6/96(H3... 58.0 8e-07
                      gb|AF008706.1|AF008706 Influenza A virus (A/Wuzhou/19/96(H3N2... 58.0 8e-07
                      gb|AF008705.1|AF008705 Influenza A virus (A/Shenzhen/43/96(H3... 58.0 8e-07
                      gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 58.0 8e-07
                      gb|AF008673.1|AF008673 Influenza A virus (A/Victoria/5/89(H3N... 58.0 8e-07
                      gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 58.0 8e-07
                      gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 58.0 8e-07
                      gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 58.0 8e-07
                      gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 58.0 8e-07
                      gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 58.0 8e-07
                      gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 58.0 8e-07
                      gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 58.0 8e-07
                      gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 58.0 8e-07
                      gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 58.0 8e-07
                      gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 58.0 8e-07
                      gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 58.0 8e-07
                      gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 58.0 8e-07
                      gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 58.0 8e-07
                      gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 58.0 8e-07
                      gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 58.0 8e-07
                      gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 58.0 8e-07
                      gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 58.0 8e-07
                      gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 58.0 8e-07
                      gb|L75991.1|FLASEG4Q Influenza A virus (A/Finland/371/1995(H3... 58.0 8e-07
                      gb|L75988.1|FLASEG4N Influenza A virus (A/Finland/296/1993(H3... 58.0 8e-07
                      gb|L75987.1|FLASEG4M Influenza A virus (A/Finland/295/1993(H3... 58.0 8e-07
                      gb|L75986.1|FLASEG4L Influenza A virus (A/Finland/292/1993(H3... 58.0 8e-07
                      gb|L75985.1|FLASEG4K Influenza A virus (A/Finland/278/1993(H3... 58.0 8e-07
                      gb|L75984.1|FLASEG4J Influenza A virus (A/Finland/276/1993(H3... 58.0 8e-07
                      gb|L75983.1|FLASEG4I Influenza A virus (A/Finland/274/1993(H3... 58.0 8e-07
                      gb|L75982.1|FLASEG4H Influenza A virus (A/Finland/263/1993(H3... 58.0 8e-07
                      gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 58.0 8e-07
                      gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 58.0 8e-07
                      gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 58.0 8e-07
                      gb|U48447.1|IAU48447 Influenza A virus (A/Hebei/19/1995(H3N2)... 58.0 8e-07
                      gb|U48446.1|IAU48446 Influenza A virus (A/Aichi/69/1994(H3N2)... 58.0 8e-07
                      gb|U48445.1|IAU48445 Influenza A virus (A/Sendai/c373/1995(H3... 58.0 8e-07
                      gb|U48444.1|IAU48444 Influenza A virus (A/Akita/1/1995(H3N2))... 58.0 8e-07
                      gb|U48442.1|IAU48442 Influenza A virus (A/Guandong/28/1994(H3... 58.0 8e-07
                      gb|U48441.1|IAU48441 Influenza A virus (A/Hebei/41/1994(H3N2)... 58.0 8e-07
                      gb|AY138515.1| Influenza A virus (A/zhejiang/10/98(H3N2)) hem... 58.0 8e-07
                      dbj|D00930.1|FLA1076HA Influenza A virus (A/Gs/HK/10/1976(H3)... 58.0 8e-07
                      dbj|D00929.1|FLA775HA Influenza A virus (A/DK/HK/7/1975(H3)) ... 58.0 8e-07
                      dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 58.0 8e-07
                      dbj|D43791.1|FLAHF Influenza A virus (A/sw/Obihiro/2/1993(H3N... 58.0 8e-07
                      dbj|D43790.1|FLAHE Influenza A virus (A/sw/Obihiro/1/1993(H3N... 58.0 8e-07
                      dbj|D43789.1|FLAHD Influenza A virus (A/Hokkaido/2/1993(H3N2)... 58.0 8e-07
                      dbj|D43788.1|FLAHC Influenza A virus (A/Hokkaido/1/1993(H3N2)... 58.0 8e-07
                      dbj|D43787.1|FLAHB Influenza A virus (A/Hokkaido/1/1988(H3N2)... 58.0 8e-07
                      dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 58.0 8e-07
                      dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 58.0 8e-07
                      gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 58.0 8e-07
                      gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 58.0 8e-07
                      gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 58.0 8e-07
                      gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 58.0 8e-07
                      gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 58.0 8e-07
                      gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 58.0 8e-07
                      gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 58.0 8e-07
                      gb|L19002.1|FLAPHILHA Influenza A virus (A/Philippines/2/1982... 58.0 8e-07
                      gb|L19003.1|FLAMISSHA Influenza A virus (A/Mississippi/1/1985... 58.0 8e-07
                      gb|CY006587.1| Influenza A virus (A/New York/541/1998(H3N2)) ... 58.0 8e-07
                      gb|CY006475.1| Influenza A virus (A/New York/518/1998(H3N2)) ... 58.0 8e-07
                      gb|CY006347.1| Influenza A virus (A/Nanchang/58/93(H3N2)) seg... 58.0 8e-07
                      gb|CY006339.1| Influenza A virus (A/Nanchang/0058/94(H3N2)) s... 58.0 8e-07
                      gb|CY006323.1| Influenza A virus (A/Hong Kong/4/84(H3N2)) seg... 58.0 8e-07
                      gb|CY006315.1| Influenza A virus (A/Hong Kong/14/83(H3N2)) se... 58.0 8e-07
                      gb|M73775.1|FLAN2HAD Influenza A virus (A/swine/Ukkel/1/1984(... 58.0 8e-07
                      gb|M21648.1|FLAM686HA Influenza A virus (A/Mem/6/1986(H3N2)) ... 58.0 8e-07
                      gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
                      gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
                      gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
                      gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 58.0 8e-07
                      gb|K03338.1|FLAHAMN Influenza A virus (A/Qu/7/1970(H3N2)) hem... 58.0 8e-07
                      gb|J02132.1|FLAHALR Influenza A virus (A/Memphis/1/1971(H3N2)... 58.0 8e-07
                      gb|J02092.1|FLAHALE Influenza A virus (A/Bangkok/1/1979(H3N2)... 58.0 8e-07
                      gb|M57632.1|FLAHAD Influenza A virus (A/Equador/4/1986(H3N2))... 58.0 8e-07
                      gb|M57630.1|FLAHAB Influenza A virus (A/Alabama/1/1981(H3N2))... 58.0 8e-07
                      gb|M54895.1|FLADORNHA Influenza A virus (A/Udorn/307/1972(H3H... 58.0 8e-07
                      gb|L20119.1|FLAHAI1389 Influenza A/Singapore/13/89 original s... 58.0 8e-07
                      gb|U08859.1|IVU08859 Influenza A virus A/Philippines/2/82/BS ... 58.0 8e-07
                      gb|U08858.1|IVU08858 Influenza A virus A/Philippines/2/82 (H3... 58.0 8e-07
                      gb|L20118.1|FLAHAS1389 Influenza A/Singapore/13/89 from embry... 58.0 8e-07
                      gb|L20114.1|FLAHAS1289 Influenza A/Singapore/12/89 from embry... 58.0 8e-07
                      gb|L20103.1|FLAHAIN190 Influenza A virus (A/Indiana/01/1990(H... 58.0 8e-07
                      gb|L20104.1|FLAHAID190 Influenza A virus (A/Indiana/01/1990(H... 58.0 8e-07
                      gb|L20115.1|FLAHAI1289 Influenza A/Singapore/12/89 original s... 58.0 8e-07
                      gb|DQ241763.1| Influenza A virus (A/swine/Alberta/Biovet1/05(... 58.0 8e-07
                      gb|DQ241762.1| Influenza A virus (A/swine/Ontario/Biovet1/05(... 58.0 8e-07
                      gb|DQ241761.1| Influenza A virus (A/swine/Quebec/Biovet1/05(H... 58.0 8e-07

                      Comment

                      • #86
                        Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                        Here's another series

                        gb|EF626623.1| Influenza A virus (A/Texas/1/1977(H3N2)) segme... 50.1 1e-04
                        gb|CY020325.1| Influenza A virus (A/Memphis/16/1978(H3N2)) se... 50.1 1e-04
                        gb|CY012528.1| Influenza A virus (A/New York/705/1994(H3N2)) ... 50.1 1e-04
                        gb|CY012128.1| Influenza A virus (A/New York/758/1993(H3N2)) ... 50.1 1e-04
                        gb|CY011480.1| Influenza A virus (A/Memphis/2/1990(H3N2)) seg... 50.1 1e-04
                        gb|DQ508833.1| Influenza A virus (A/Beijing/353/1989(H3N2)) h... 50.1 1e-04
                        gb|CY003712.1| Influenza A virus (A/Hong Kong/14/92(H3N2)) se... 50.1 1e-04
                        gb|CY003064.1| Influenza A virus (A/Memphis/1/90(H3N2)) segme... 50.1 1e-04
                        gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 50.1 1e-04
                        gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 50.1 1e-04
                        gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 50.1 1e-04
                        gb|AY589652.1| Influenza A virus (A/Cheonnam/340/2002(H3N2)) ... 50.1 1e-04
                        gb|AY589651.1| Influenza A virus (A/Cheonnam/338/2002(H3N2)) ... 50.1 1e-04
                        gb|AY589650.1| Influenza A virus (A/Cheonnam/323/2002(H3N2)) ... 50.1 1e-04
                        gb|AY377540.1| Influenza A virus (A/Finland/205/92(H3N2)) hem... 50.1 1e-04
                        gb|AY377539.1| Influenza A virus (A/Finland/245/92(H3N2)) hem... 50.1 1e-04
                        gb|AY377538.1| Influenza A virus (A/Finland/190/92(H3N2)) hem... 50.1 1e-04
                        gb|AY377537.1| Influenza A virus (A/Finland/191/92(H3N2)) hem... 50.1 1e-04
                        gb|CY009308.1| Influenza A virus (A/Swine/Wisconsin/194/80(H3... 50.1 1e-04
                        gb|CY006843.1| Influenza A virus (A/Memphis/5/77(H3N2)) segme... 50.1 1e-04
                        gb|AY661174.1| Influenza A virus (A/Oslo/2352/93(H3N2)) hemag... 50.1 1e-04
                        gb|AY661169.1| Influenza A virus (A/Lyon/1803/93(H3N2)) hemag... 50.1 1e-04
                        gb|AY661167.1| Influenza A virus (A/Netherlands/399/93(H3N2))... 50.1 1e-04
                        gb|AY661165.1| Influenza A virus (A/Netherlands/440/93(H3N2))... 50.1 1e-04
                        gb|AY661162.1| Influenza A virus (A/Netherlands/357/93(H3N2))... 50.1 1e-04
                        gb|AY661157.1| Influenza A virus (A/Victoria/104/93(H3N2)) he... 50.1 1e-04
                        gb|AY661150.1| Influenza A virus (A/Enschede/5458/93(H3N2)) h... 50.1 1e-04
                        gb|AY661146.1| Influenza A virus (A/Netherlands/165/93 (H3N2)... 50.1 1e-04
                        gb|AY661143.1| Influenza A virus (A/Madrid/G101/93(H3N2)) hem... 50.1 1e-04
                        gb|AY661142.1| Influenza A virus (A/Madrid/G116/93(H3N2)) hem... 50.1 1e-04
                        gb|AY661137.1| Influenza A virus (A/Stockholm/13/92(H3N2)) he... 50.1 1e-04
                        gb|AY661134.1| Influenza A virus (A/Umea/1982/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661132.1| Influenza A virus (A/Paris/287/93(H3N2)) hemag... 50.1 1e-04
                        gb|AY661131.1| Influenza A virus (A/Netherlands/3/93(H3N2)) h... 50.1 1e-04
                        gb|AY661130.1| Influenza A virus (A/Beijing/32/92(H3N2)) hema... 50.1 1e-04
                        gb|AY661128.1| Influenza A virus (A/South_Australia/27/92(H3N... 50.1 1e-04
                        gb|AY661127.1| Influenza A virus (A/South_Australia/23/92(H3N... 50.1 1e-04
                        gb|AY661126.1| Influenza A virus (A/South_Australia/8/92(H3N2... 50.1 1e-04
                        gb|AY661125.1| Influenza A virus (A/Netherlands/938/92(H3N2))... 50.1 1e-04
                        gb|AY661124.1| Influenza A virus (A/Houston/56798/92(H3N2)) h... 50.1 1e-04
                        gb|AY661123.1| Influenza A virus (A/Houston/56941/92(H3N2)) h... 50.1 1e-04
                        gb|AY661122.1| Influenza A virus (A/Houston/56829/92(H3N2)) h... 50.1 1e-04
                        gb|AY661121.1| Influenza A virus (A/Stockholm/8/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661120.1| Influenza A virus (A/Stockholm/7/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661119.1| Influenza A virus (A/Stockholm/20/91(H3N2)) he... 50.1 1e-04
                        gb|AY661118.1| Influenza A virus (A/Madrid/OV31/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661117.1| Influenza A virus (A/Madrid/G58/92(H3N2)) hema... 50.1 1e-04
                        gb|AY661116.1| Influenza A virus (A/Tilburg/5957/92(H3N2)) he... 50.1 1e-04
                        gb|AY661115.1| Influenza A virus (A/Amsterdam/4112/92(H3N2)) ... 50.1 1e-04
                        gb|AY661114.1| Influenza A virus (A/Nijmegen/3129/92(H3N2)) h... 50.1 1e-04
                        gb|AY661113.1| Influenza A virus (A/Nijmegen/3126/92(H3N2)) h... 50.1 1e-04
                        gb|AY661112.1| Influenza A virus (A/Rotterdam/100540/92(H3N2)... 50.1 1e-04
                        gb|AY661111.1| Influenza A virus (A/Geneva/5113/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661110.1| Influenza A virus (A/Finland/220/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661109.1| Influenza A virus (A/Finland/218/92(H3N2)) hem... 50.1 1e-04
                        gb|AY661108.1| Influenza A virus (A/Netherlands/823/92 (H3N2)... 50.1 1e-04
                        gb|AY661107.1| Influenza A virus (A/Lyon/chu24222/91(H3N2)) h... 50.1 1e-04
                        gb|AY661106.1| Influenza A virus (A/Lyon/chu24103/91(H3N2)) h... 50.1 1e-04
                        gb|AY661105.1| Influenza A virus (A/Lyon/chu23672/91(H3N2)) h... 50.1 1e-04
                        gb|AY661104.1| Influenza A virus (A/Lyon/ons1337/91(H3N2)) he... 50.1 1e-04
                        gb|AY661103.1| Influenza A virus (A/Lyon/ons1276/91(H3N2)) he... 50.1 1e-04
                        gb|AY661102.1| Influenza A virus (A/Lyon/ons1373/91(H3N2)) he... 50.1 1e-04
                        gb|AY661101.1| Influenza A virus (A/Lyon/ons1594/91(H3N2)) he... 50.1 1e-04
                        gb|AY661100.1| Influenza A virus (A/Lyon/ons1189/91(H3N2)) he... 50.1 1e-04
                        gb|AY661099.1| Influenza A virus (A/Lyon/1182/91(H3N2)) hemag... 50.1 1e-04
                        gb|AY661098.1| Influenza A virus (A/Lyon/1149/91(H3N2)) hemag... 50.1 1e-04
                        gb|AY661097.1| Influenza A virus (A/Netherlands/935/92(H3N2))... 50.1 1e-04
                        gb|AY661096.1| Influenza A virus (A/Enschede/1285/92(H3N2)) h... 50.1 1e-04
                        gb|AY661095.1| Influenza A virus (A/Paris/614/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661094.1| Influenza A virus (A/Paris/597/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661093.1| Influenza A virus (A/Paris/583/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661092.1| Influenza A virus (A/Paris/564/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661091.1| Influenza A virus (A/Paris/548/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661090.1| Influenza A virus (A/Paris/512/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661089.1| Influenza A virus (A/Paris/490/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661088.1| Influenza A virus (A/Paris/467/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661087.1| Influenza A virus (A/Paris/457/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661086.1| Influenza A virus (A/Paris/424/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661085.1| Influenza A virus (A/Paris/417/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661084.1| Influenza A virus (A/Paris/407/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661083.1| Influenza A virus (A/Paris/325/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661082.1| Influenza A virus (A/Paris/320/92(H3N2)) hemag... 50.1 1e-04
                        gb|AY661081.1| Influenza A virus (A/England/261/91(H3N2)) hem... 50.1 1e-04
                        gb|AY661080.1| Influenza A virus (A/Netherlands/819/92(H3N2))... 50.1 1e-04
                        gb|AY661079.1| Influenza A virus (A/Madrid/G12/91(H3N2)) hema... 50.1 1e-04
                        gb|AY661078.1| Influenza A virus (A/Netherlands/816/91(H3N2))... 50.1 1e-04
                        gb|AY661077.1| Influenza A virus (A/Geneva/6447/91(H3N2)) hem... 50.1 1e-04
                        gb|AY661076.1| Influenza A virus (A/Canberra/1/91(H3N2)) hema... 50.1 1e-04
                        gb|AY661075.1| Influenza A virus (A/England/260/91(H3N2)) hem... 50.1 1e-04
                        gb|AY661074.1| Influenza A virus (A/Shanghai/24/90(H3N2)) hem... 50.1 1e-04
                        gb|AY661073.1| Influenza A virus (A/Victoria/2/90(H3N2)) hema... 50.1 1e-04
                        gb|AY661072.1| Influenza A virus (A/Seoul/1/90(H3N2)) hemaggl... 50.1 1e-04
                        gb|AY661071.1| Influenza A virus (A/Atlanta/211/89(H3N2)) hem... 50.1 1e-04
                        gb|AY661070.1| Influenza A virus (A/Memphis/5/90(H3N2)) hemag... 50.1 1e-04
                        gb|AY661069.1| Influenza A virus (A/Memphis/2/90(H3N2)) hemag... 50.1 1e-04
                        gb|AY661068.1| Influenza A virus (A/Netherlands/650/89 (H3N2)... 50.1 1e-04
                        gb|AY661067.1| Influenza A virus (A/Netherlands/620/89 (H3N2)... 50.1 1e-04
                        gb|AY661066.1| Influenza A virus (A/Beijing/353/89(H3N2)) hem... 50.1 1e-04
                        gb|AY661064.1| Influenza A virus (A/Singapore/53/89(H3N2)) he... 50.1 1e-04
                        gb|AY661063.1| Influenza A virus (A/Singapore/40/89(H3N2)) he... 50.1 1e-04
                        gb|AY661062.1| Influenza A virus (A/Singapore/36/89(H3N2)) he... 50.1 1e-04
                        gb|AY661061.1| Influenza A virus (A/Singapore/35/89(H3N2)) he... 50.1 1e-04
                        gb|AY661060.1| Influenza A virus (A/Singapore/34/89(H3N2)) he... 50.1 1e-04
                        gb|AY661059.1| Influenza A virus (A/Hongkong/1/89(H3N2)) hema... 50.1 1e-04
                        gb|AY661058.1| Influenza A virus (A/Wellington/5/89(H3N2)) he... 50.1 1e-04
                        gb|AY661057.1| Influenza A virus (A/Geneva/5007/89(H3N2)) hem... 50.1 1e-04
                        gb|AY661054.1| Influenza A virus (A/Netherlands/450/88(H3N2))... 50.1 1e-04
                        gb|AY661053.1| Influenza A virus (A/Colorado/2/86(H3N2)) hema... 50.1 1e-04
                        gb|AY661048.1| Influenza A virus (A/Netherlands/241/82(H3N2))... 50.1 1e-04
                        gb|AY661029.1| Influenza A virus (A/Netherlands/738/89(H3N2))... 50.1 1e-04
                        gb|CY008740.1| Influenza A virus (A/Memphis/7/90(H3N2)) segme... 50.1 1e-04
                        gb|AF450246.1| Influenza A virus (A/Texas/1/77(H3N2)) hemaggl... 50.1 1e-04
                        dbj|D10162.1|FLAG89HA Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 1e-04
                        gb|AY262744.1| Influenza A virus (A/Finland/246/92(H3N2)) hae... 50.1 1e-04
                        emb|Z46413.1| Influenza A virus (A/Scotland/142/1993(H3N2)) m... 50.1 1e-04
                        emb|Z46402.1| Influenza A virus (A/England/471/1993(H3N2)) mR... 50.1 1e-04
                        emb|Z46398.1| Influenza A virus (A/England/289/1993(H3N2)) mR... 50.1 1e-04
                        emb|Z46391.1| Influenza A virus (A/Beijing/353/1989(H3N2)) mR... 50.1 1e-04
                        emb|Z46410.1| Influenza A virus (A/Hong Kong/23/1992(H3N2)) m... 50.1 1e-04
                        emb|Z46409.1| Influenza A virus (A/Hong Kong/34/1990(H3N2)) m... 50.1 1e-04
                        emb|Z46392.1| Influenza A virus (A/Beijing/32/1992(H3N2)) mRN... 50.1 1e-04
                        emb|Z46412.1| Influenza A virus (A/Scotland/2/1993(H3N2)) mRN... 50.1 1e-04
                        emb|Z46393.1| Influenza A virus (A/England/1/1993(H3N2)) mRNA... 50.1 1e-04
                        emb|X75800.1| Influenza A virus (Beijing/352/1989,(highgrowth... 50.1 1e-04
                        emb|X05907.1| Influenza A virus (A/England/321/1977(H3N2)) ge... 50.1 1e-04
                        gb|AF386612.1|AF386612 Influenza A virus (A/Pusan/10/98(H3N2)... 50.1 1e-04
                        gb|AF386611.1|AF386611 Influenza A virus (A/Seoul/47/91(H3N2)... 50.1 1e-04
                        gb|AF386610.1|AF386610 Influenza A virus (A/Seoul/46/91(H3N2)... 50.1 1e-04
                        gb|AF386609.1|AF386609 Influenza A virus (A/Seoul/44/91(H3N2)... 50.1 1e-04
                        gb|AF386608.1|AF386608 Influenza A virus (A/Seoul/23/91(H3N2)... 50.1 1e-04
                        gb|AF386607.1|AF386607 Influenza A virus (A/Seoul/22/90(H3N2)... 50.1 1e-04
                        gb|AF386606.1|AF386606 Influenza A virus (A/Seoul/50/91(H3N2)... 50.1 1e-04
                        gb|DQ336015.1| Influenza A virus (A/Brazil/006/00(H3N2)) hema... 50.1 1e-04
                        gb|DQ336014.1| Influenza A virus (A/Brazil/009/00(H3N2)) hema... 50.1 1e-04
                        gb|DQ336013.1| Influenza A virus (A/Brazil/010/00(H3N2)) hema... 50.1 1e-04
                        gb|DQ336012.1| Influenza A virus (A/Brazil/015/00(H3N2)) hema... 50.1 1e-04
                        gb|DQ336011.1| Influenza A virus (A/Brazil/008/00(H3N2)) hema... 50.1 1e-04
                        gb|CY008123.1| Influenza A virus (A/Memphis/4/77(H3N2)) segme... 50.1 1e-04
                        gb|CY008115.1| Influenza A virus (A/Memphis/2/77(H3N2)) segme... 50.1 1e-04
                        gb|AF180564.1| Influenza A virus (A/Tianjing/33/92(H3N2)) hem... 50.1 1e-04
                        gb|AF204238.1|AF204238 Influenza A virus (A/England/427/88(H3... 50.1 1e-04
                        dbj|D30663.1|FLASPH2 Influenza A virus (A/Washington/15/91(H3... 50.1 1e-04
                        dbj|D30662.1|FLASPH1 Influenza A virus (A/Brazil/02/91(H3N2))... 50.1 1e-04
                        dbj|D30664.1|FLAH13 Influenza A virus (A/Tianjin/33/92(H3N2))... 50.1 1e-04
                        dbj|D30669.1|FLAH3N2HA1 Influenza A virus (A/Kitakyushu/159/9... 50.1 1e-04
                        gb|AF008857.1|AF008857 Influenza A virus (A/Pennsylvania/9/93... 50.1 1e-04
                        gb|AF008823.1|AF008823 Influenza A virus (A/Kitakyushu/93(H3N... 50.1 1e-04
                        gb|AF008817.1|AF008817 Influenza A virus (A/California/271/92... 50.1 1e-04
                        gb|AF008816.1|AF008816 Influenza A virus (A/Qingdao/53/92(H3N... 50.1 1e-04
                        gb|AF008815.1|AF008815 Influenza A virus (A/Hawaii/3/92(H3N2)... 50.1 1e-04
                        gb|AF008814.1|AF008814 Influenza A virus (A/Alaska/9/92(H3N2)... 50.1 1e-04
                        gb|AF008813.1|AF008813 Influenza A virus (A/Beijing/46/92(H3N... 50.1 1e-04
                        gb|AF008812.1|AF008812 Influenza A virus (A/Beijing/32/92(H3N... 50.1 1e-04
                        gb|AF008811.1|AF008811 Influenza A virus (A/Victoria/1/93(H3N... 50.1 1e-04
                        gb|AF008810.1|AF008810 Influenza A virus (A/Indonesia/3109/91... 50.1 1e-04
                        gb|AF008808.1|AF008808 Influenza A virus (A/Guangdong/4/93(H3... 50.1 1e-04
                        gb|AF008807.1|AF008807 Influenza A virus (A/Ningxia/10/93(H3N... 50.1 1e-04
                        gb|AF008800.1|AF008800 Influenza A virus (A/Russia/46967/94(H... 50.1 1e-04
                        gb|AF008799.1|AF008799 Influenza A virus (A/France/1109/94(H3... 50.1 1e-04
                        gb|AF008798.1|AF008798 Influenza A virus (A/New_York/64/93(H3... 50.1 1e-04
                        gb|AF008797.1|AF008797 Influenza A virus (A/New_York/63/93(H3... 50.1 1e-04
                        dbj|D49967.1|FLAH3N2I Influenza A virus (A/Shiga/2/91(H3N2)) ... 50.1 1e-04
                        dbj|D49966.1|FLAH3N2H Influenza A virus (A/Bangkok/144/90(H3N... 50.1 1e-04
                        dbj|D49965.1|FLAH3N2G Influenza A virus (A/Bangkok/139/90(H3N... 50.1 1e-04
                        dbj|D49964.1|FLAH3N2F Influenza A virus (A/OMS/7026/89(H3N2))... 50.1 1e-04
                        dbj|D49963.1|FLAH3N2E Influenza A virus (A/Guizhou/54/89(H3N2... 50.1 1e-04
                        dbj|D49962.1|FLAH3N2D Influenza A virus (A/Bangkok/235/89(H3N... 50.1 1e-04
                        dbj|D49961.1|FLAH3N2C Influenza A virus (A/Beijing/352/89(H3N... 50.1 1e-04
                        dbj|D49960.1|FLAH3N2B Influenza A virus (A/Hokkaido/20/89(H3N... 50.1 1e-04
                        gb|CY007611.1| Influenza A virus (A/Memphis/19/78(H3N2)) segm... 50.1 1e-04
                        dbj|AB043706.1| Influenza A virus (A/Chiba/54/92(H3N2)) HA ge... 50.1 1e-04
                        dbj|AB043705.1| Influenza A virus (A/Kamata/14/91(H3N2)) HA g... 50.1 1e-04
                        gb|L20102.1|FLAHAHI191 Influenza A virus (A/Hawaii/01/1991 MD... 50.1 1e-04
                        gb|CY006739.1| Influenza A virus (A/Memphis/3/77(H3N2)) segme... 50.1 1e-04
                        gb|CY006731.1| Influenza A virus (A/Memphis/1/77(H3N2)) segme... 50.1 1e-04
                        gb|CY006707.1| Influenza A virus (A/Memphis/18/78(H3N2)) segm... 50.1 1e-04
                        gb|CY006699.1| Influenza A virus (A/Memphis/12/78(H3N2)) segm... 50.1 1e-04
                        gb|CY006691.1| Influenza A virus (A/Memphis/2/78(H3N2)) segme... 50.1 1e-04
                        gb|U77840.1|IAU77840 Influenza A virus (A/Tottori/872AM2AL3/1... 50.1 1e-04
                        gb|U77839.1|IAU77839 Influenza A virus (A/Tottori/849AM2AL3/1... 50.1 1e-04
                        gb|U77838.1|IAU77838 Influenza A virus (A/Tottori/872AM1AL3/1... 50.1 1e-04
                        gb|U77837.1|IAU77837 Influenza A virus (A/Tottori/849AM1AL3/1... 50.1 1e-04
                        gb|U77836.1|IAU77836 Influenza A virus (A/Tottori/872AM4/1994... 50.1 1e-04
                        gb|U77835.1|IAU77835 Influenza A virus (A/Tottori/849AM4/1994... 50.1 1e-04
                        gb|U77834.1|IAU77834 Influenza A virus (A/Tottori/872AM2/1994... 50.1 1e-04
                        gb|U77833.1|IAU77833 Influenza A virus (A/Tottori/849AM2/1994... 50.1 1e-04
                        gb|U77832.1|IAU77832 Influenza A virus (A/Tottori/872K4/1994(... 50.1 1e-04
                        gb|U77831.1|IAU77831 Influenza A virus (A/Tottori/849K4/1994)... 50.1 1e-04
                        gb|AF008704.1|AF008704 Influenza A virus (A/Russia/31/93(H3N2... 50.1 1e-04
                        gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 50.1 1e-04
                        gb|AF008702.1|AF008702 Influenza A virus (A/Paris/80/91(H3N2)... 50.1 1e-04
                        gb|AF008701.1|AF008701 Influenza A virus (A/Spain/118/93(H3N2... 50.1 1e-04
                        gb|AF008700.1|AF008700 Influenza A virus (A/Victoria/29/92(H3... 50.1 1e-04
                        gb|AF008699.1|AF008699 Influenza A virus (A/Wellington/66/92(... 50.1 1e-04
                        gb|AF008698.1|AF008698 Influenza A virus (A/Beijing/47/92(H3N... 50.1 1e-04
                        gb|AF008697.1|AF008697 Influenza A virus (A/Victoria/68/92(H3... 50.1 1e-04
                        gb|AF008696.1|AF008696 Influenza A virus (A/South_Australia/6... 50.1 1e-04
                        gb|AF008695.1|AF008695 Influenza A virus (A/Singapore/8/92(H3... 50.1 1e-04
                        gb|AF008694.1|AF008694 Influenza A virus (A/Indonesia/3946/92... 50.1 1e-04
                        gb|AF008692.1|AF008692 Influenza A virus (A/Umea/1/92(H3N2)) ... 50.1 1e-04
                        gb|AF008691.1|AF008691 Influenza A virus (A/Kasauli/149/92(H3... 50.1 1e-04
                        gb|AF008690.1|AF008690 Influenza A virus (A/India/237/93(H3N2... 50.1 1e-04
                        gb|AF008689.1|AF008689 Influenza A virus (A/India/236/93(H3N2... 50.1 1e-04
                        gb|AF008688.1|AF008688 Influenza A virus (A/England/261/91(H3... 50.1 1e-04
                        gb|AF008687.1|AF008687 Influenza A virus (A/Brazil/91(H3N2)) ... 50.1 1e-04
                        gb|AF008686.1|AF008686 Influenza A virus (A/Shanghai/6/90(H3N... 50.1 1e-04
                        gb|AF008685.1|AF008685 Influenza A virus (A/Hawaii/1/91(H3N2)... 50.1 1e-04
                        gb|AF008684.1|AF008684 Influenza A virus (A/Beijing/353/89(H3... 50.1 1e-04
                        gb|AF008683.1|AF008683 Influenza A virus (A/Puerto_Rico/1/90(... 50.1 1e-04
                        gb|AF008682.1|AF008682 Influenza A virus (A/Shiga/2/91(H3N2))... 50.1 1e-04
                        gb|AF008681.1|AF008681 Influenza A virus (A/Indiana/3/91(H3N2... 50.1 1e-04
                        gb|AF008680.1|AF008680 Influenza A virus (A/South_Australia/3... 50.1 1e-04
                        gb|AF008679.1|AF008679 Influenza A virus (A/Pennsylvania/09/9... 50.1 1e-04
                        gb|AF008678.1|AF008678 Influenza A virus (A/Seoul/45/91(H3N2)... 50.1 1e-04
                        gb|AF008677.1|AF008677 Influenza A virus (A/Sophia/155/93(H3N... 50.1 1e-04
                        gb|AF008676.1|AF008676 Influenza A virus (A/Washington/15/91(... 50.1 1e-04
                        gb|AF008675.1|AF008675 Influenza A virus (A/South_Dakota/1/91... 50.1 1e-04
                        gb|AF008674.1|AF008674 Influenza A virus (A/Mexico/3255/94(H3... 50.1 1e-04
                        gb|AF008672.1|AF008672 Influenza A virus (A/Czechoslovakia/19... 50.1 1e-04
                        gb|AF008671.1|AF008671 Influenza A virus (A/England/88(H3N2))... 50.1 1e-04
                        gb|AF008670.1|AF008670 Influenza A virus (A/Beijing/4/89(H3N2... 50.1 1e-04
                        gb|AF008669.1|AF008669 Influenza A virus (A/Shanghai/1/89(H3N... 50.1 1e-04
                        gb|AF008668.1|AF008668 Influenza A virus (A/Shanghai/16/89(H3... 50.1 1e-04
                        gb|AF008667.1|AF008667 Influenza A virus (A/Guangdong/89(H3N2... 50.1 1e-04
                        gb|AF008666.1|AF008666 Influenza A virus (A/Guangdong/39/89(H... 50.1 1e-04
                        gb|AF008665.1|AF008665 Influenza A virus (A/Guizhou/54/89(H3N... 50.1 1e-04
                        gb|AF008664.1|AF008664 Influenza A virus (A/England/648/89(H3... 50.1 1e-04
                        gb|AF008663.1|AF008663 Influenza A virus (A/Sichuan/89(H3N2))... 50.1 1e-04
                        gb|AF008662.1|AF008662 Influenza A virus (A/Beijing/57/89(H3N... 50.1 1e-04
                        gb|AF008660.1|AF008660 Influenza A virus (A/Shanghai/24/90(H3... 50.1 1e-04
                        gb|AF008659.1|AF008659 Influenza A virus (A/Kasauli/206/91(H3... 50.1 1e-04
                        gb|AF008658.1|AF008658 Influenza A virus (A/Hong Kong/34/90(H... 50.1 1e-04
                        gb|AF008657.1|AF008657 Influenza A virus (A/Paris/1/92(H3N2))... 50.1 1e-04
                        gb|AF008656.1|AF008656 Influenza A virus (A/Perth/01/92(H3N2)... 50.1 1e-04
                        gb|U97740.1|U97740 Influenza A virus (A/Beijing/353/89(H3)) h... 50.1 1e-04
                        gb|L76035.1|FLAHMG Influenza A virus (A/Beijing/32/1992(H3N2)... 50.1 1e-04
                        gb|L76036.1|FLAHMGA Influenza A virus (A/Beijing/353/1989(H3N... 50.1 1e-04
                        gb|L75980.1|FLASEG4F Influenza A virus (A/Finland/239/1992(H3... 50.1 1e-04
                        gb|L75979.1|FLASEG4E Influenza A virus (A/Finland/211/1992(H3... 50.1 1e-04
                        gb|L75978.1|FLASEG4D Influenza A virus (A/Finland/189/1991(H3... 50.1 1e-04
                        gb|L75977.1|FLASEG4C Influenza A virus (A/Finland/144/1990(H3... 50.1 1e-04
                        gb|L75976.1|FLASEG4B Influenza A virus (A/Finland/133/1990(H3... 50.1 1e-04
                        gb|L75975.1|FLASEG4A Influenza A virus (A/Finland/110/1989(H3... 50.1 1e-04
                        gb|U26830.1|IAU26830 Influenza A virus (A/Beijing/32/1992(H3N... 50.1 1e-04
                        dbj|D43792.1|FLAHG Influenza A virus (A/sw/Obihiro/3/1993(H3N... 50.1 1e-04
                        dbj|D43786.1|FLAHA Influenza A virus (A/Beijin/352/1989(H3N2)... 50.1 1e-04
                        dbj|D86469.1| Influenza A virus (A/SW/Obihiro/1/1994(H3N2)) g... 50.1 1e-04
                        gb|L18996.1|FLAGUHA1 Influenza A virus (A/Guangdong/39/1989(H... 50.1 1e-04
                        gb|L19004.1|FLAGUANGHA Influenza A virus (A/Guangdong/39/1989... 50.1 1e-04
                        gb|L18998.1|FLAGUAHA1 Influenza A virus (A/Guangdong/39/1989(... 50.1 1e-04
                        gb|L19001.1|FLAENGLHA Influenza A virus (A/England/427/1988(H... 50.1 1e-04
                        gb|L18997.1|FLAENGHA1 Influenza A virus (A/England/427/1988(H... 50.1 1e-04
                        gb|L18994.1|FLABEIHA1 Influenza A virus (A/Beijing/4/1989(H3N... 50.1 1e-04
                        gb|L19000.1|FLABAIJHA Influenza A virus (A/Beijing/4/1989(H3N... 50.1 1e-04
                        gb|M57644.1|FLAHAEW Influenza A virus (A/Wyoming/3/1987(H3N2)... 50.1 1e-04
                        gb|L20119.1|FLAHAI1389 Influenza A/Singapore/13/89 original s... 50.1 1e-04
                        gb|L20105.1|FLAHASD190 Influenza A virus (A/South Dakota/01/1... 50.1 1e-04
                        gb|L20118.1|FLAHAS1389 Influenza A/Singapore/13/89 from embry... 50.1 1e-04
                        gb|L20114.1|FLAHAS1289 Influenza A/Singapore/12/89 from embry... 50.1 1e-04
                        gb|L20103.1|FLAHAIN190 Influenza A virus (A/Indiana/01/1990(H... 50.1 1e-04
                        gb|L20104.1|FLAHAID190 Influenza A virus (A/Indiana/01/1990(H... 50.1 1e-04
                        gb|L20101.1|FLAHAHW191 Influenza A virus (A/Hawaii/01/1991(H3... 50.1 1e-04

                        Comment

                        • #87
                          Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                          Here's a shorter travel log for a subset (these sequences are from the 1980's)

                          gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 83.8 3e-14
                          gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 83.8 3e-14
                          gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 83.8 3e-14
                          gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 83.8 3e-14
                          gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 83.8 3e-14
                          gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 83.8 3e-14
                          gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 83.8 3e-14
                          gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 83.8 3e-14
                          gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 83.8 3e-14
                          gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 83.8 3e-14
                          dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 83.8 3e-14
                          gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 83.8 3e-14
                          gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 83.8 3e-14
                          dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 83.8 3e-14
                          gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 83.8 3e-14
                          gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 83.8 3e-14
                          gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 83.8 3e-14
                          gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 83.8 3e-14
                          gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 83.8 3e-14
                          gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 83.8 3e-14
                          gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 83.8 3e-14
                          gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 83.8 3e-14
                          gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 83.8 3e-14
                          gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 83.8 3e-14
                          gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 83.8 3e-14
                          dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 83.8 3e-14
                          gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 83.8 3e-14
                          gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 83.8 3e-14
                          gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                          gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                          gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                          gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                          gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14

                          Comment

                          • #88
                            Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                            Originally posted by niman View Post
                            Here's a shorter travel log for a subset (these sequences are from the 1980's)

                            gb|CY010756.1| Influenza A virus (A/Memphis/8/1988(H3N2)) seg... 83.8 3e-14
                            gb|CY003544.1| Influenza A virus (A/Hong Kong/7/87(H3N2)) seg... 83.8 3e-14
                            gb|CY003512.1| Influenza A virus (A/Hong Kong/2/88(H3N2)) seg... 83.8 3e-14
                            gb|AY589660.1| Influenza A virus (A/Kyongbuk/320/2002(H3N2)) ... 83.8 3e-14
                            gb|AY589657.1| Influenza A virus (A/Incheon/260/2002(H3N2)) h... 83.8 3e-14
                            gb|AY589655.1| Influenza A virus (A/Daejeon/258/2002(H3N2)) h... 83.8 3e-14
                            gb|AY661065.1| Influenza A virus (A/Victoria/1/89(H3N2)) hema... 83.8 3e-14
                            gb|AY661056.1| Influenza A virus (A/Stockholm/12/88(H3N2)) he... 83.8 3e-14
                            gb|CY008724.1| Influenza A virus (A/Memphis/5/88(H3N2)) segme... 83.8 3e-14
                            gb|CY008732.1| Influenza A virus (A/Memphis/15/88(H3N2)) segm... 83.8 3e-14
                            dbj|D10161.1|FLAS87HA Influenza A virus (A/Sichuan/02/87(H3N2... 83.8 3e-14
                            gb|AF008907.1|AF008907 Influenza A virus (A/Baylor4B/Texas/39... 83.8 3e-14
                            gb|AF386604.1|AF386604 Influenza A virus (A/Seoul/11/88(H3N2)... 83.8 3e-14
                            dbj|D21173.1|FLAHAH2 Influenza A virus (A/Sichuan/2/87(H3N2))... 83.8 3e-14
                            gb|AF008890.1|AF008890 Influenza A virus (A/Colorado/2/(H3N2)... 83.8 3e-14
                            gb|AF008889.1|AF008889 Influenza A virus (A/Guizhou/1/(H3N2))... 83.8 3e-14
                            gb|AF008888.1|AF008888 Influenza A virus (A/Victoria/7/(H3N2)... 83.8 3e-14
                            gb|AF008887.1|AF008887 Influenza A virus (A/Qingdao/10/(H3N2)... 83.8 3e-14
                            gb|AF008886.1|AF008886 Influenza A virus (A/Shanghai/11/(H3N2... 83.8 3e-14
                            gb|AF008885.1|AF008885 Influenza A virus (A/Los_Angeles/(H3N2... 83.8 3e-14
                            gb|AF008884.1|AF008884 Influenza A virus (A/Sichuan/2/(H3N2))... 83.8 3e-14
                            gb|AF008883.1|AF008883 Influenza A virus (A/Guangdong/9/(H3N2... 83.8 3e-14
                            gb|AF008882.1|AF008882 Influenza A virus (A/Sydney/1/(H3N2)) ... 83.8 3e-14
                            gb|AF008881.1|AF008881 Influenza A virus (A/Kobe/768/88(H3N2)... 83.8 3e-14
                            gb|AF008880.1|AF008880 Influenza A virus (A/Chiba/38/88(H3N2)... 83.8 3e-14
                            dbj|D49959.1|FLAH3N2 Influenza A virus (A/Sichuan/02/87(H3N2)... 83.8 3e-14
                            gb|CY003352.1| Influenza A virus (A/Memphis/13/88(H3N2)) segm... 83.8 3e-14
                            gb|AF008703.1|AF008703 Influenza A virus (A/Taiwan/1143/91(H3... 83.8 3e-14
                            gb|L19412.1|FLAHASHANZ Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                            gb|L19413.1|FLAHASHANY Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                            gb|L19414.1|FLAHASHANX Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                            gb|L19415.1|FLAHASHANW Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                            gb|L19416.1|FLAHASHANV Influenza A virus (A/Shanghai/11/1987/... 83.8 3e-14
                            The above travel log identifies a small portion of H3 that was widely circulating in 1987 and 1988, but they disappeared from the database until it reapeared in three of the six recombinants in Korea. The finding that regions of the 2002 H3 genes keep appearing in isolates from a decade earlier isn't a coincidence, due to lab contamination, or due to random mutations. These sequences arrise through multiple recombination events, which creates short regions that match prior sequences. These short sequences are generally missed by those trying to prove recombination that keeps long stretches intact.

                            Thus, there is too much recombination for these methodolgies to detect as stretches greater than 100 BP.

                            Comment

                            • #89
                              Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                              Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans. Katia Koelle, Sarah Cobey, Bryan Grenfell, and Mercedes Pascual. Science 314(5807):1898 - 1903 DOI: 10.1126/science.1132745

                              Human influenza A (subtype H3N2) is characterized genetically by the limited standing diversity of its hemagglutinin and antigenically by clusters that emerge and replace each other within 2 to 8 years. By introducing an epidemiological model that allows for differences between the genetic and antigenic properties of the virus's hemagglutinin, we show that these patterns can arise from cluster-specific immunity alone. Central to the formulation is a genotype-to-phenotype mapping, based on neutral networks, with antigenic phenotypes, not genotypes, determining the degree of strain cross-immunity. The model parsimoniously explains well-known, as well as previously unremarked, features of interpandemic influenza dynamics and evolution. It captures the observed boom-and-bust pattern of viral evolution, with periods of antigenic stasis during which genetic diversity grows, and with episodic contraction of this diversity during cluster transitions.

                              Antigenic stasis = mammalian immune systems effectively disable viral infection, "removing" these sequences from the viral databases that are, as Niman has pointed out, incomplete and spotty.

                              Comment

                              • #90
                                Re: Homologous Recombination is Very Rare or Absent in Human Influenza A Virus

                                Commentary

                                The Demise of Random Mutations
                                http://www.recombinomics.com/News/03280802/Random_Mutations.html
                                Recombinomics Commentary

                                Comment

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