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  • #16
    Re: H5N1 in Saudi Arabia

    Originally posted by niman View Post
    Commentary

    http://www.recombinomics.com/News/02...Uva_Saudi.html
    <TABLE style="WIDTH: 775px; COLOR: rgb(190,5,1); FONT-FAMILY: helvetica,arial,sans-serif; TEXT-ALIGN: left" cellSpacing=0 cellPadding=0 border=0><TBODY><TR><TD style="VERTICAL-ALIGN: top; WIDTH: 40px">

    </TD><TD style="VERTICAL-ALIGN: top; WIDTH: 515px" colSpan=5><BIG><BIG>Commentary </BIG></BIG>

    Uva Lake H5N1 in Saudi Arabia

    Recombinomics Commentary 07:50
    February 18, 2008

    Sequences from H5N1 in Saudia Arabia have been released at Genbank. One of the HA sequences, A/houbara bustard/Saudi Arabia/6732-1/2007, is the Uva Lake strain. It is most closely related to the recently published sequences from Romania, but recent published sequences from Germany, Krasnodar, and Romania all fall onto the same branch which traces back to the wild bird outbreak at Uva Lake in the summer of 2006.

    Those sequences were subsequently found in South Korea at the end of 2006 and then were reportedly found in the outbreak in Kuwait in early 2007. The subsequent outbreaks in the summer and fall in Europe have been confirmed to be related by published sequences or said to be related by sequencing labs.

    The detection in Saudia Arabia is not a surprise because of the characterization of the outbreak in Kuwait, or the migratory path of houbara bustard (Chlamydotis undulata macqueenii).

    .

    </TD></TR></TBODY></TABLE>
    "The next major advancement in the health of American people will be determined by what the individual is willing to do for himself"-- John Knowles, Former President of the Rockefeller Foundation

    Comment

    • #17
      Re: H5N1 in Saudi Arabia

      <TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=168805331 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="91">91: EU445682</TD><TD vAlign=top align=left>
      Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports168805331 = [ ["TitleText","Reports"]];var Reports168805331 = [ ["UseLocalConfig","Reports168805331","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=168805331&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&dopt=gra ph&db=nuccore&term=EU445682'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU445682'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
      </TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) neuraminidase (NA) gene, complete cds
      gi|168805331|gb|EU445682.1|[168805331] </TD></TR></TBODY></TABLE>

      Comment

      • #18
        Re: H5N1 in Saudi Arabia

        As expected the NA sequence is related to the Uvs Lake subclade and contains G743A.

        Comment

        • #19
          Re: H5N1 in Saudi Arabia

          Commentary

          http://www.recombinomics.com/News/03030806/H5N1_Saudi_G743A.html

          Comment

          • #20
            Re: H5N1 in Saudi Arabia

            Originally posted by niman View Post
            Commentary

            http://www.recombinomics.com/News/03...udi_G743A.html
            Commentary

            Uvs Lake Saudi Arabia H5N1 Has G743A

            Recombinomics Commentary 23:09
            March 3, 2008

            The NA sequence from the wild bird isolate, A/houbara bustard/Saudi Arabia/6732-1/2007 has been released at Genbank. The HA sequence was released earlier and it was closely related to the clade 2.2.3 sequences from Kuwait. Therefore, the presence of G743A in the Saudi sequence was not a surprise.

            However, the recently released sequence provides a more complete picture of G743A acquisitions in clade 2.2.3. The sequences in circulation in Europe and the Middle East trace back to the Uvs Lake outbreak in the summer of 2006. That outbreak was on a par with the Qinghai Lake wild bird outbreak a year earlier. Therefore, the spread of the Uvs Lake sequences was expected.

            The Uvs Lake sequences were detected in environment samples from wild birds, as well as dead poultry in south Korea at the end of 2006. Like Uvs Lake however, these sequences did not have H743A.

            In February however, there were H5N1 outbreaks in Moscow and Kuwait. The Moscow sequences were clade 2.2.3, but they did not trace back to Uvs Lake. Instead they were closely related to Azerbaijan sequences. However, the Kuwait sequences did trace back to Uvs Lake and both sets of sequences acquired G743A, even though they represented distinct clade 2.2.3 lineages.

            At the same G743A was acquired by multiple clade 2.2.1 sequences in Egypt. Prior to February, 2007 there were not reported sequences from Egypt with G743A. However, in February, 2007 G743A appeared on distinct lineages in Egypt, and this was followed by the acquisition of additional lineages in Egypt, as well as distinct lineages in Ghana and Nigeria. In all cases, earlier closely related sequences had been reported that did not have G743A.

            Since February, 2007, all published Uvs Lake NA sequences have had G743A.


            .
            "The next major advancement in the health of American people will be determined by what the individual is willing to do for himself"-- John Knowles, Former President of the Rockefeller Foundation

            Comment

            • #21
              Re: H5N1 in Saudi Arabia

              <DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474552 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="2">2: EU590695</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474552 = [ ["TitleText","Reports"]];var Reports171474552 = [ ["UseLocalConfig","Reports171474552","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474552&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590695'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590695'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474552 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474552&ordinalpos=2&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds
              gi|171474552|gb|EU590695.1|[171474552]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474550 171474550 1 0 2274--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474550 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="3">3: EU590694</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474550 = [ ["TitleText","Reports"]];var Reports171474550 = [ ["UseLocalConfig","Reports171474550","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474550&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590694'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590694'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474550 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474550&ordinalpos=3&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 2 polymerase PB1 (PB1) gene, complete cds
              gi|171474550|gb|EU590694.1|[171474550]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474548 171474548 1 0 2151--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474548 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="4">4: EU590693</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474548 = [ ["TitleText","Reports"]];var Reports171474548 = [ ["UseLocalConfig","Reports171474548","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474548&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590693'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590693'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474548 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474548&ordinalpos=4&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 3 polymerase PA (PA) gene, complete cds
              gi|171474548|gb|EU590693.1|[171474548]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474545 171474545 1 0 823--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474545 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="5">5: EU590692</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474545 = [ ["TitleText","Reports"]];var Reports171474545 = [ ["UseLocalConfig","Reports171474545","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474545&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590692'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590692'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474545 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474545&ordinalpos=5&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 8 nonstructural protein 2 (NS2) and nonstructural protein 1 (NS1) genes, complete cds
              gi|171474545|gb|EU590692.1|[171474545]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474543 171474543 1 0 1497--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474543 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="6">6: EU590691</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474543 = [ ["TitleText","Reports"]];var Reports171474543 = [ ["UseLocalConfig","Reports171474543","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474543&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590691'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590691'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474543 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474543&ordinalpos=6&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 5 nucleocapsid protein (NP) gene, complete cds
              gi|171474543|gb|EU590691.1|[171474543]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474540 171474540 1 0 982--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474540 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="7">7: EU590690</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474540 = [ ["TitleText","Reports"]];var Reports171474540 = [ ["UseLocalConfig","Reports171474540","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474540&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590690'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590690'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474540 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474540&ordinalpos=7&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/turkey/Saudi Arabia/6732-6/2007(H5N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds
              gi|171474540|gb|EU590690.1|[171474540]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474538 171474538 1 0 2212--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474538 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="8">8: EU590689</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474538 = [ ["TitleText","Reports"]];var Reports171474538 = [ ["UseLocalConfig","Reports171474538","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474538&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590689'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590689'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474538 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474538&ordinalpos=8&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 1 polymerase PB2 (PB2) gene, partial cds
              gi|171474538|gb|EU590689.1|[171474538]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474536 171474536 1 0 2274--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474536 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="9">9: EU590688</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474536 = [ ["TitleText","Reports"]];var Reports171474536 = [ ["UseLocalConfig","Reports171474536","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474536&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590688'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590688'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474536 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474536&ordinalpos=9&itool=Ent rezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel.S equence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 2 polymerase PB1 (PB1) gene, complete cds
              gi|171474536|gb|EU590688.1|[171474536]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474534 171474534 1 0 2151--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474534 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="10">10: EU590687</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474534 = [ ["TitleText","Reports"]];var Reports171474534 = [ ["UseLocalConfig","Reports171474534","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474534&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590687'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590687'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474534 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474534&ordinalpos=10&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 3 polymerase PA (PA) gene, complete cds
              gi|171474534|gb|EU590687.1|[171474534]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474531 171474531 1 0 807--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474531 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="11">11: EU590686</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474531 = [ ["TitleText","Reports"]];var Reports171474531 = [ ["UseLocalConfig","Reports171474531","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474531&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590686'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590686'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474531 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474531&ordinalpos=11&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 8 nonstructural protein 2 (NS2) gene, partial cds; and nonstructural protein 1 (NS1) gene, complete cds
              gi|171474531|gb|EU590686.1|[171474531]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474529 171474529 1 0 1484--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474529 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="12">12: EU590685</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474529 = [ ["TitleText","Reports"]];var Reports171474529 = [ ["UseLocalConfig","Reports171474529","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474529&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590685'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590685'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474529 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474529&ordinalpos=12&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 5 nucleocapsid protein (NP) gene, partial cds
              gi|171474529|gb|EU590685.1|[171474529]
              </TD></TR></TBODY></TABLE></DT></DL>
              <!--docsumok 171474526 171474526 1 0 982--><DL><DT><TABLE cellPadding=0 width="100%"><TBODY><TR><TD style="WHITE-SPACE: nowrap" vAlign=top width="20%"><INPUT id=UidCheckBox type=checkbox value=171474526 name=EntrezSystem2.PEntrez.Nuccore.Sequence_Result sPanel.Sequence_RVDocSum.uid sid="13">13: EU590684</TD><TD vAlign=top align=left>
              Reports<SCRIPT language=JavaScript1.2><!--var PopUpMenu2_LocalConfig_Reports171474526 = [ ["TitleText","Reports"]];var Reports171474526 = [ ["UseLocalConfig","Reports171474526","",""], ["ASN.1","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=as n'","",""], ["XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=xm l'","",""], ["Summary","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=do csum'","",""], ["Brief","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=br ief'","",""], ["FASTA","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=fa sta'","",""], ["TinySeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=fa sta_xml'","",""], ["GenBank","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=gb '","",""], ["INSDSeq XML","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=gb c_xml'","",""], ["GenBank(Full)","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=gb withparts'","",""], ["GI List","window.top.location='/entrez/viewer.fcgi?list_uids=171474526&db=nuccore&dopt=gi '","",""], ["Graphic","window.top.location='?cmd=Show&doptcmdl =graph&db=nuccore&term=EU590684'","",""], ["Revision History","window.top.location='/entrez/sutils/girevhist.cgi?val=EU590684'","",""]]--></SCRIPT> </TD><TD vAlign=top align=right>
              <SCRIPT language=JavaScript1.2><!-- var Menu171474526 = [ ["UseLocalConfig", "jsmenu3Config", "", ""], ["Related Sequences" , "window.top.location='/sites/entrez?Db=nuccore&DbFrom=nuccore&Cmd=Link&LinkName =nuccore_nuccore&LinkReadableName=Related%20Sequen ces&IdsFromResult=171474526&ordinalpos=13&itool=En trezSystem2.PEntrez.Nuccore.Sequence_ResultsPanel. Sequence_RVDocSum' ", "", ""] ] --></SCRIPT>Links</TD></TR><TR><TD style="PADDING-LEFT: 2.8em" vAlign=top align=left colSpan=3>Influenza A virus (A/houbara bustard/Saudi Arabia/6732-1/2007(H5N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds
              gi|171474526|gb|EU590684.1|[171474526] </TD></TR></TBODY></TABLE></DT></DL>

              Comment

              • #22
                Re: H5N1 in Saudi Arabia

                <table id="Table7" align="center" cellpadding="0" cellspacing="0" width="100%"><tbody><tr><td bb-bgcolor="#f0f8ff" align="center" width="10000"><form target="" name="form" action="request.cgi" method="post"><table bgcolor="#ffffff" border="0" cellpadding="0" cellspacing="0" width="100%"><tbody><tr><td><table border="0" cellpadding="0" cellspacing="2" width="100%"><tbody><tr bgcolor="#e4ecf6"><td align="right">
                ABV53477</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-1/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53487" checked="checked" type="checkbox"></td> <td align="right">ABV53487</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-3/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABV53497" checked="checked" type="checkbox"></td> <td align="right">ABV53497</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-4/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53507" checked="checked" type="checkbox"></td> <td align="right">ABV53507</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-5/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABV53517" checked="checked" type="checkbox"></td> <td align="right">ABV53517</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-7/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53527" checked="checked" type="checkbox"></td> <td align="right">ABV53527</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-9/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABV53537" checked="checked" type="checkbox"></td> <td align="right">ABV53537</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-10/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53547" checked="checked" type="checkbox"></td> <td align="right">ABV53547</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-15/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABV53557" checked="checked" type="checkbox"></td> <td align="right">ABV53557</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-22/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53567" checked="checked" type="checkbox"></td> <td align="right">ABV53567</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-23/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABV53577" checked="checked" type="checkbox"></td> <td align="right">ABV53577</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-29/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABV53587" checked="checked" type="checkbox"></td> <td align="right">ABV53587</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Nigeria</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Nigeria/1071-30/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ABW89586" checked="checked" type="checkbox"></td> <td align="right">ABW89586</td> <td align="right">749</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Thailand</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Thailand/ICRC-V143/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ABY88901" checked="checked" type="checkbox"></td> <td align="right">ABY88901</td> <td align="right">749</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Malaysia</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Malaysia/5223/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ACA21562" checked="checked" type="checkbox"></td> <td align="right">ACA21562</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR2/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ACA21573" checked="checked" type="checkbox"></td> <td align="right">ACA21573</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR3/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ACA21584" checked="checked" type="checkbox"></td> <td align="right">ACA21584</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR5/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ACA21595" checked="checked" type="checkbox"></td> <td align="right">ACA21595</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR6/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ACA21606" checked="checked" type="checkbox"></td> <td align="right">ACA21606</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR7/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#ffffff"> <td align="center" width="32"><input name="accession" value="ACA21617" checked="checked" type="checkbox"></td> <td align="right">ACA21617</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR8/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> <tr bgcolor="#e4ecf6"> <td align="center" width="32"><input name="accession" value="ACA21628" checked="checked" type="checkbox"></td> <td align="right">ACA21628</td> <td align="right">759</td> <td align="center">Avian</td> <td align="center">1 (PB2)</td> <td align="center">H5N1</td> <td align="center">Kuwait</td> <td align="center">2007</td> <td colspan="2" align="left">Influenza A virus (A/chicken/Kuwait/KISR9/2007(H5N1))</td> <td align="center"> </td> <td align="center"> </td> </tr> </tbody></table> </td></tr> </tbody></table> </form> </td> <td background="http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/main_right_bg.gif" width="1">
                </td> </tr> <tr> <td background="http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/but_left.gif"></td> <td background="http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/but_mid_bg.gif" bgcolor="#ffffff" width="10000"></td> <td align="right" background="http://www.ncbi.nlm.nih.gov/coreweb/template1/pix/but_right.gif"></td> </tr> </tbody></table> <table id="Table24" align="center" border="0" cellpadding="0" cellspacing="0" width="100%"><tbody><tr><td> </td> <td align="right" nowrap="nowrap" valign="top">

                they have E627K
                </td></tr></tbody></table>

                Comment

                • #23
                  Re: H5N1 in Saudi Arabia

                  two genomes from Saudi-Arabia have been released.

                  > Co-circulation of two sublineages of HPAI H5N1 in the Kingdom of Saudi Arabia

                  no date is given, just "2007" for both viruses.

                  But the turkey has about 155 differences to original Qinghai and the bustard only 91,
                  so the bastard is supposed to be from the beginning of 2007 and the turkey from the end of 2007
                  Over 200 differences between the turkey and the bustard, the common anchestor
                  is calculated to have existed before the Lake Qinghai event in May 2005.
                  (but after the creation of the Qinghai virus by reassortment in about Feb.2005)


                  the only OIE report is from ~14.Nov.2007, but they mention an earlier outbreak from 27.March 2007


                  best match for the turkey is A/Ck/NGA/1047-34, but still ~120 differences,
                  so this is a new, rare lineage split from the Nigeria/1047/1071 strain
                  in ~Aug.2005, not found elsewhere.

                  -----------edit 1------------------
                  the similarity of the bustard with the Kuwait chicken from Feb.2007 gives a rather
                  reliable dating of Jan.2007 .
                  I'm interested in expert panflu damage estimates
                  my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                  Comment

                  • #24
                    Re: H5N1 in Saudi Arabia

                    Originally posted by gsgs View Post
                    two genomes from Saudi-Arabia have been released.

                    > Co-circulation of two sublineages of HPAI H5N1 in the Kingdom of Saudi Arabia

                    no date is given, just "2007" for both viruses.

                    But the turkey has about 155 differences to original Qinghai and the bustard only 91,
                    so the bastard is supposed to be from the beginning of 2007 and the turkey from the end of 2007
                    Over 200 differences between the turkey and the bustard, the common anchestor
                    is calculated to have existed before the Lake Qinghai event in May 2005.
                    (but after the creation of the Qinghai virus by reassortment in about Feb.2005)


                    the only OIE report is from ~14.Nov.2007, but they mention an earlier outbreak from 27.March 2007


                    best match for the turkey is A/Ck/NGA/1047-34, but still ~120 differences,
                    so this is a new, rare lineage split from the Nigeria/1047/1071 strain
                    in ~Aug.2005, not found elsewhere.

                    -----------edit 1------------------
                    the similarity of the bustard with the Kuwait chicken from Feb.2007 gives a rather
                    reliable dating of Jan.2007 .
                    Please. The turkey is related to clade 2.2 in western Africa, while the bustard is related to clade 2.2.3 in Kuwait.

                    The numbers you post really are not veru useful. The standard is phylogentic anlysis, which has the differences, but also which isolates are related to which.

                    The situation relative to clade 2.2.3 is quite clear, but your posts and number tallies are not.

                    Comment

                    • #25
                      Re: H5N1 in Saudi Arabia

                      Originally posted by gsgs View Post
                      two genomes from Saudi-Arabia have been released.

                      > Co-circulation of two sublineages of HPAI H5N1 in the Kingdom of Saudi Arabia

                      no date is given, just "2007" for both viruses.

                      But the turkey has about 155 differences to original Qinghai and the bustard only 91,
                      so the bastard is supposed to be from the beginning of 2007 and the turkey from the end of 2007
                      Over 200 differences between the turkey and the bustard, the common anchestor
                      is calculated to have existed before the Lake Qinghai event in May 2005.
                      (but after the creation of the Qinghai virus by reassortment in about Feb.2005)


                      the only OIE report is from ~14.Nov.2007, but they mention an earlier outbreak from 27.March 2007


                      best match for the turkey is A/Ck/NGA/1047-34, but still ~120 differences,
                      so this is a new, rare lineage split from the Nigeria/1047/1071 strain
                      in ~Aug.2005, not found elsewhere.

                      -----------edit 1------------------
                      the similarity of the bustard with the Kuwait chicken from Feb.2007 gives a rather
                      reliable dating of Jan.2007 .
                      You are posting nonsense. The turkey H5N1 did NOT evolve from the clade 2.2.3, while the bustard did. Phylogenetic trees clearly show multiple branches. Your numbers simply confuse as does your comarision of H5N1 on two complete different branches (which I assume are based on the fact that two lineages appear in the same country at the same time). There is ZERO data suggesting that the H5N1 from the turkey and bustard in Saudi Arabia did not happen in the same time frame. In fact the use of co-circulation in the submission forms indicate that the collections WERE at the same time.

                      Comment

                      • #26
                        Re: H5N1 in Saudi Arabia

                        A/falcon/Saudi-Arabia/D1396/2007(H5N1) has been uploaded.

                        It is similar to A/turkey/Saudi-Arabia/6732-6/2007(H5N1) (34 differences)
                        but not much similar to any other public flu-virus, which is unusual.

                        Next closest has 129 differences and is from Nigeria.

                        the turkey has 155 differences from original Qinghai and the falcon 163,
                        which is unusually many for 2007.

                        These two are apparently descendants of a close relative of
                        A/Chicken/Nigeria/1047-34/2006(H5N1)
                        I'm interested in expert panflu damage estimates
                        my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                        Comment

                        • #27
                          Re: H5N1 in Saudi Arabia

                          Originally posted by gsgs View Post
                          A/falcon/Saudi-Arabia/D1396/2007(H5N1) has been uploaded.

                          It is similar to A/turkey/Saudi-Arabia/6732-6/2007(H5N1) (34 differences)
                          but not much similar to any other public flu-virus, which is unusual.

                          Next closest has 129 differences and is from Nigeria.

                          the turkey has 155 differences from original Qinghai and the falcon 163,
                          which is unusually many for 2007.

                          These two are apparently descendants of a close relative of
                          A/Chicken/Nigeria/1047-34/2006(H5N1)
                          Phylogenetic analysis (involving multiple branches) draws a much clearer picture of these isolates.

                          Comment

                          • #28
                            Re: H5N1 in Saudi Arabia

                            has someone already done and published such an analysis ?

                            it should show those two viruses distant from everything else
                            but closest to the Nigeria viruses

                            how did it come from Nigeria to the reservoir in question
                            where it did evolve and reside and mutate
                            and without contact to other flu undetected for 1-2 years ?
                            I'm interested in expert panflu damage estimates
                            my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                            Comment

                            • #29
                              Re: H5N1 in Saudi Arabia

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                              However, the first confirmed case of HPAI H5N1 in KSA was dated 31 March 2007 (OIE, 2008).
                              ...
                              The first case of H5N1 infection in KSA was reported from specimens collected from
                              imported Houbara bustards
                              ...
                              This suggests an early epidemiological connection between KSA and Nigeria resulting in spread from one country to another or that the viruses spreading to these two countries came from a common source. Spread of descendants of early Nigerian viruses seems to have occurred efficiently in diverse avian species reared commercially (chickens, turkeys, ostriches and ducks) and farms located in different parts of the Kingdom, suggesting poor biosecurity across the commercial sector.
                              I'm interested in expert panflu damage estimates
                              my current links: http://bit.ly/hFI7H ILI-charts: http://bit.ly/CcRgT

                              Comment

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