H1N1 Hong Kong 2008

HenryN · #1 October 1st, 2008, 08:51 AM

HA sequences

FJ227686	Reports	Links
Influenza A virus (A/HongKong/1313/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds gi\|206575147\|gb\|FJ227686.1\|[206575147]

FJ227685	Reports	Links
Influenza A virus (A/HongKong/1052/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds gi\|206575145\|gb\|FJ227685.1\|[206575145]

FJ227684	Reports	Links
Influenza A virus (A/HongKong/942/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds gi\|206575143\|gb\|FJ227684.1\|[206575143]

HenryN · #2 October 1st, 2008, 08:52 AM

NA sequences

1: FJ227687

Reports

Links

Influenza A virus (A/HongKong/942/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds
gi|206575149|gb|FJ227687.1|[206575149]

1: FJ227688

Reports

Links

Influenza A virus (A/HongKong/1052/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds
gi|206575151|gb|FJ227688.1|[206575151]

FJ227689	Reports	Links
Influenza A virus (A/HongKong/1313/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds gi\|206575153\|gb\|FJ227689.1\|[206575153]

HenryN · #3 October 1st, 2008, 09:01 AM

The 3 HA sequences are clade 2C (but are two different clade 2C sub-clades).

HenryN · #4 October 1st, 2008, 09:02 AM

All 3 NA sequences have H274Y, but one of the sequences is clade 2B, while the other two are clade 2C.

HenryN · #5 October 1st, 2008, 09:14 AM

HA trvel log

gb|FJ227684.1| Influenza A virus (A/HongKong/942/2008(H1N1)) ... 34.2 2.5
gb|CY034547.1| Influenza A virus (A/Hawaii/AF1908/2008(H1N1))... 34.2 2.5
gb|CY034545.1| Influenza A virus (A/Hawaii/AF1904/2008(H1N1))... 34.2 2.5
gb|CY034538.1| Influenza A virus (A/Hawaii/AF1895/2008(H1N1))... 34.2 2.5
gb|CY034527.1| Influenza A virus (A/Japan/AF1884/2008(H1N1)) ... 34.2 2.5
gb|CY034515.1| Influenza A virus (A/Guam/AF1934/2007(H1N1)) s... 34.2 2.5
gb|CY034512.1| Influenza A virus (A/Hawaii/AF1906/2007(H1N1))... 34.2 2.5
gb|EU876762.1| Influenza A virus (A/Jiangxi/955/2006(H1N1)) h... 34.2 2.5
gb|EU876760.1| Influenza A virus (A/Jiangxi/711/2005(H1N1)) h... 34.2 2.5
gb|EU876757.1| Influenza A virus (A/Jiangxi/1150/2006(H1N1)) ... 34.2 2.5
gb|EU876756.1| Influenza A virus (A/Jiangxi/1140/2006(H1N1)) ... 34.2 2.5
gb|EU876755.1| Influenza A virus (A/Jiangxi/1105/2006(H1N1)) ... 34.2 2.5
gb|EU876754.1| Influenza A virus (A/Jiangxi/1085/2006(H1N1)) ... 34.2 2.5
gb|EU876753.1| Influenza A virus (A/Jiangxi/1062/2006(H1N1)) ... 34.2 2.5
gb|EU551851.1| Influenza A virus (A/Paris/6/2007(H1N1)) hemag... 34.2 2.5
gb|EU791307.1| Influenza A virus (A/Ulaanbaatar/1809/2007(H1)... 34.2 2.5
gb|EU791303.1| Influenza A virus (A/Orkhon/1901/2007(H1)) seg... 34.2 2.5
gb|EU791301.1| Influenza A virus (A/Ulaanbaatar/1830/2007(H1)... 34.2 2.5
gb|EU791299.1| Influenza A virus (A/Sainshand/1142/2007(H1)) ... 34.2 2.5
gb|EU791297.1| Influenza A virus (A/Ulaanbaatar/1094/2007(H1)... 34.2 2.5
gb|EU779632.1| Influenza A virus (A/California/06/2008(H1N1))... 34.2 2.5
gb|EU779619.1| Influenza A virus (A/Hawaii/05/2008(H1N1)) hem... 34.2 2.5
gb|EU779612.1| Influenza A virus (A/Hawaii/46/2007(H1N1)) hem... 34.2 2.5
gb|EU716603.1| Influenza A virus (A/Hawaii/42/2007(H1N1)) seg... 34.2 2.5
gb|EU716601.1| Influenza A virus (A/Hawaii/43/2007(H1N1)) seg... 34.2 2.5
gb|EU716570.1| Influenza A virus (A/Hawaii/44/2007(H1N1)) seg... 34.2 2.5
gb|EU716531.1| Influenza A virus (A/Hawaii/45/2007(H1N1)) seg... 34.2 2.5
gb|CY031508.1| Influenza A virus (A/Texas/AF1323/2008(H1N1)) ... 34.2 2.5
gb|CY031503.1| Influenza A virus (A/Texas/AF1318/2008(H1N1)) ... 34.2 2.5
gb|CY031502.1| Influenza A virus (A/Texas/AF1317/2008(H1N1)) ... 34.2 2.5
gb|CY031501.1| Influenza A virus (A/Texas/AF1316/2008(H1N1)) ... 34.2 2.5
gb|CY031469.1| Influenza A virus (A/Japan/AF1274/2008(H1N1)) ... 34.2 2.5
gb|CY031465.1| Influenza A virus (A/Hawaii/AF1249/2008(H1N1))... 34.2 2.5
gb|CY031464.1| Influenza A virus (A/Hawaii/AF1248/2008(H1N1))... 34.2 2.5
gb|CY031454.1| Influenza A virus (A/Texas/AF1330/2007(H1N1)) ... 34.2 2.5
gb|CY031452.1| Influenza A virus (A/Texas/AF1327/2007(H1N1)) ... 34.2 2.5
gb|CY031451.1| Influenza A virus (A/Korea/AF1312/2007(H1N1)) ... 34.2 2.5
gb|CY031436.1| Influenza A virus (A/Hawaii/AF1265/2007(H1N1))... 34.2 2.5
gb|CY031435.1| Influenza A virus (A/Hawaii/AF1264/2007(H1N1))... 34.2 2.5
gb|CY031434.1| Influenza A virus (A/Hawaii/AF1263/2007(H1N1))... 34.2 2.5
gb|CY031432.1| Influenza A virus (A/Hawaii/AF1261/2007(H1N1))... 34.2 2.5
gb|CY031431.1| Influenza A virus (A/Hawaii/AF1260/2007(H1N1))... 34.2 2.5
gb|CY031430.1| Influenza A virus (A/Hawaii/AF1259/2007(H1N1))... 34.2 2.5
gb|CY031429.1| Influenza A virus (A/Hawaii/AF1258/2007(H1N1))... 34.2 2.5
gb|CY031425.1| Influenza A virus (A/Hawaii/AF1254/2007(H1N1))... 34.2 2.5
gb|CY031423.1| Influenza A virus (A/Hawaii/AF1252/2007(H1N1))... 34.2 2.5
gb|CY031422.1| Influenza A virus (A/Hawaii/AF1251/2007(H1N1))... 34.2 2.5
gb|CY031421.1| Influenza A virus (A/Hawaii/AF1250/2007(H1N1))... 34.2 2.5
gb|CY031388.1| Influenza A virus (A/Auckland/8/2007(H1N1)) se... 34.2 2.5
gb|CY031380.1| Influenza A virus (A/Thailand/486/2007(H1N1)) ... 34.2 2.5
gb|CY031376.1| Influenza A virus (A/Philippines/3150/2007(H1N... 34.2 2.5
gb|CY031368.1| Influenza A virus (A/Malaysia/862/2007(H1N1)) ... 34.2 2.5
gb|CY031360.1| Influenza A virus (A/Singapore/43/2007(H1N1)) ... 34.2 2.5
gb|CY031354.1| Influenza A virus (A/Malaysia/330/2007(H1N1)) ... 34.2 2.5
gb|CY031352.1| Influenza A virus (A/Jeju/2279/2007(H1N1)) seg... 34.2 2.5
gb|CY031350.1| Influenza A virus (A/Macau/189/2007(H1N1)) seg... 34.2 2.5
gb|CY031348.1| Influenza A virus (A/Victoria/501/2007(H1N1)) ... 34.2 2.5
gb|CY031342.1| Influenza A virus (A/Hong Kong/2652/2006(H1N1)... 34.2 2.5
dbj|AB434106.1| Influenza A virus (A/Morioka/1/2005(H1N1)) HA... 34.2 2.5
dbj|AB434105.1| Influenza A virus (A/Morioka/7/2005(H1N1)) HA... 34.2 2.5
dbj|AB434104.1| Influenza A virus (A/Morioka/5/2005(H1N1)) HA... 34.2 2.5
dbj|AB434102.1| Influenza A virus (A/Morioka/21/2005(H1N1)) H... 34.2 2.5
dbj|AB434101.1| Influenza A virus (A/Morioka/4/2005(H1N1)) HA... 34.2 2.5
dbj|AB434100.1| Influenza A virus (A/Morioka/3/2005(H1N1)) HA... 34.2 2.5
gb|EU097953.1| Influenza A virus (A/Denmark/15/2004(H1N1)) he... 34.2 2.5
gb|EU097950.1| Influenza A virus (A/Denmark/3/2005(H1N1)) hem... 34.2 2.5
gb|EU097948.1| Influenza A virus (A/Denmark/16/2004(H1N1)) he... 34.2 2.5
gb|EU097943.1| Influenza A virus (A/Denmark/17/2004(H1N1)) he... 34.2 2.5
gb|EU516099.1| Influenza A virus (A/Alaska/1/2006(H1N1)) segm... 34.2 2.5
gb|EU516094.1| Influenza A virus (A/Minnesota/25/2007(H1N1)) ... 34.2 2.5
gb|EU516087.1| Influenza A virus (A/Hawaii/19/2007(H1N1)) seg... 34.2 2.5
gb|EU516079.1| Influenza A virus (A/Hawaii/19/2007(H1N1)) seg... 34.2 2.5
gb|EU516060.1| Influenza A virus (A/Hawaii/17/2007(H1N1)) seg... 34.2 2.5
gb|EU516059.1| Influenza A virus (A/Hawaii/16/2007(H1N1)) seg... 34.2 2.5
gb|EU516057.1| Influenza A virus (A/Hawaii/15/2007(H1N1)) seg... 34.2 2.5
gb|EU400230.1| Influenza A virus (A/Milan/05/2005(H1N1)) hema... 34.2 2.5
gb|EU400229.1| Influenza A virus (A/Milan/04/2005(H1N1)) hema... 34.2 2.5
gb|CY029780.1| Influenza A virus (A/Austria/396325/2007(H1N1)... 34.2 2.5
gb|CY028732.1| Influenza A virus (A/California/UR06-0462/2007... 34.2 2.5
gb|EU304355.1| Influenza A virus (A/Busan/03/2007(H1N1)) hema... 34.2 2.5
gb|EU304354.1| Influenza A virus (A/Busan/02/2007(H1N1)) hema... 34.2 2.5
gb|CY026523.1| Influenza A virus (A/Colorado/UR06-0053/2007(H... 34.2 2.5
gb|EU199355.1| Influenza A virus (A/New York/08/2007(H1N1)) s... 34.2 2.5
gb|EU199337.1| Influenza A virus (A/Hawaii/10/2006(H1N1)) seg... 34.2 2.5
gb|EU199335.1| Influenza A virus (A/Hawaii/01/2007(H1N1)) seg... 34.2 2.5
gb|EU199330.1| Influenza A virus (A/Hawaii/11/2006(H1N1)) seg... 34.2 2.5
gb|EU199325.1| Influenza A virus (A/Maryland/01/2007(H1N1)) s... 34.2 2.5
gb|EU199312.1| Influenza A virus (A/Washington/16/2007(H1N1))... 34.2 2.5
gb|EU199307.1| Influenza A virus (A/Colorado/04/2006(H1N1)) s... 34.2 2.5
gb|CY025237.1| Influenza A virus (A/Illinois/UR06-0019/2007(H... 34.2 2.5
gb|EU100672.1| Influenza A virus (A/California/3/2006(H1N1)) ... 34.2 2.5
gb|EU100598.1| Influenza A virus (A/New York/20/2006(H1N1)) s... 34.2 2.5
gb|CY023018.1| Influenza A virus (A/Auckland/595/2000(H1N1)) ... 34.2 2.5
gb|CY022173.1| Influenza A virus (A/Auckland/582/2000(H1N1)) ... 34.2 2.5
dbj|AB286012.1| Influenza A virus (A/Hanoi/TX09/2006(H1N1)) H... 34.2 2.5
gb|EF599744.1| Influenza A virus (A/lake ice/Lake Park/Siberi... 34.2 2.5
gb|EF599734.1| Influenza A virus (A/lake ice/Lake Park/Siberi... 34.2 2.5
gb|EF599683.1| Influenza A virus (A/lake ice/Lake Park/Siberi... 34.2 2.5
gb|EF566344.1| Influenza A virus (A/Johannesburg/438/2006(H1N... 34.2 2.5
gb|EF566237.1| Influenza A virus (A/Macau/227/2005(H1N1)) seg... 34.2 2.5
gb|EF566236.1| Influenza A virus (A/Macau/122/2005(H1N1)) seg... 34.2 2.5
gb|EF566235.1| Influenza A virus (A/Thailand/28/2005(H1N1)) s... 34.2 2.5
gb|CY019997.1| Influenza A virus (A/Waikato/17/2005(H1N1)) se... 34.2 2.5
gb|CY017315.1| Influenza A virus (A/Waikato/4/2005(H1N1)) seg... 34.2 2.5
gb|CY016699.1| Influenza A virus (A/South Australia/58/2005(H... 34.2 2.5
gb|CY016459.1| Influenza A virus (A/Waikato/11/2005(H1N1)) se... 34.2 2.5
gb|CY016369.1| Influenza A virus (A/Arizona/1/2006(H1N1)) seg... 34.2 2.5
gb|CY016365.1| Influenza A virus (A/California/27/2005(H1N1))... 34.2 2.5
gb|CY013581.1| Influenza A virus (A/Waikato/13/2005(H1N1)) se... 34.2 2.5
gb|CY002984.1| Influenza A virus (A/New York/221/2003(H1N1)) ... 34.2 2.5
gb|AF117241.1|AF117241 Influenza A virus (A/South Carolina/1/... 34.2 2.5
gb|AF116576.1|AF116576 Influenza A virus (A/New_York/1/18(H1N... 34.2 2.5
gb|AF116575.1|AF116575 Influenza A virus (A/Brevig_Mission/1/... 34.2 2.5
gb|L33483.1|FLAHA1D Influenza A virus (A/Finland/42/1986(H1N1... 34.2 2.5

HenryN · #6 October 1st, 2008, 09:20 AM

Code:

 
gb|FJ227684.1|  Influenza A virus (A/HongKong/942/2008(H1N1)) ...  44.1    0.005
gb|FJ183466.1|  Influenza A virus (A/Vienna/414/2007(H1N1)) se...  44.1    0.005
gb|FJ179360.1|  Influenza A virus (A/Pennsylvania/13/2007(H1N1...  44.1    0.005
gb|FJ179359.1|  Influenza A virus (A/Arizona/14/2007(H1N1)) se...  44.1    0.005
gb|FJ179358.1|  Influenza A virus (A/Arizona/13/2007(H1N1)) se...  44.1    0.005
gb|CY034621.1|  Influenza A virus (A/Guatemala/AF1995/2008(H1N...  44.1    0.005
gb|CY034620.1|  Influenza A virus (A/Honduras/AF1994/2008(H1N1...  44.1    0.005
gb|CY034619.1|  Influenza A virus (A/Honduras/AF1993/2008(H1N1...  44.1    0.005
gb|CY034618.1|  Influenza A virus (A/Germany/AF1992/2008(H1N1)...  44.1    0.005
gb|CY034617.1|  Influenza A virus (A/Germany/AF1991/2008(H1N1)...  44.1    0.005
gb|CY034616.1|  Influenza A virus (A/Germany/AF1990/2008(H1N1)...  44.1    0.005
gb|CY034615.1|  Influenza A virus (A/Germany/AF1989/2008(H1N1)...  44.1    0.005
gb|CY034614.1|  Influenza A virus (A/Germany/AF1988/2008(H1N1)...  44.1    0.005
gb|CY034613.1|  Influenza A virus (A/Germany/AF1987/2008(H1N1)...  44.1    0.005
gb|CY034612.1|  Influenza A virus (A/Germany/AF1986/2008(H1N1)...  44.1    0.005
gb|CY034611.1|  Influenza A virus (A/Germany/AF1985/2008(H1N1)...  44.1    0.005
gb|CY034610.1|  Influenza A virus (A/Germany/AF1984/2008(H1N1)...  44.1    0.005
gb|CY034609.1|  Influenza A virus (A/Germany/AF1983/2008(H1N1)...  44.1    0.005
gb|CY034608.1|  Influenza A virus (A/Germany/AF1982/2008(H1N1)...  44.1    0.005
gb|CY034607.1|  Influenza A virus (A/Germany/AF1981/2008(H1N1)...  44.1    0.005
gb|CY034606.1|  Influenza A virus (A/Germany/AF1980/2008(H1N1)...  44.1    0.005
gb|CY034605.1|  Influenza A virus (A/Germany/AF1979/2008(H1N1)...  44.1    0.005
gb|CY034604.1|  Influenza A virus (A/Germany/AF1978/2008(H1N1)...  44.1    0.005
gb|CY034603.1|  Influenza A virus (A/Germany/AF1977/2008(H1N1)...  44.1    0.005
gb|CY034602.1|  Influenza A virus (A/Germany/AF1976/2008(H1N1)...  44.1    0.005
gb|CY034601.1|  Influenza A virus (A/Germany/AF1975/2008(H1N1)...  44.1    0.005
gb|CY034599.1|  Influenza A virus (A/Germany/AF1973/2008(H1N1)...  44.1    0.005
gb|CY034597.1|  Influenza A virus (A/Germany/AF1971/2008(H1N1)...  44.1    0.005
gb|CY034596.1|  Influenza A virus (A/Guatemala/AF1969/2008(H1N...  44.1    0.005
gb|CY034595.1|  Influenza A virus (A/Honduras/AF1968/2008(H1N1...  44.1    0.005
gb|CY034592.1|  Influenza A virus (A/Texas/AF1962/2008(H1N1)) ...  44.1    0.005
gb|CY034591.1|  Influenza A virus (A/Colorado/AF1961/2008(H1N1...  44.1    0.005
gb|CY034590.1|  Influenza A virus (A/Texas/AF1960/2008(H1N1)) ...  44.1    0.005
gb|CY034589.1|  Influenza A virus (A/Nevada/AF1959/2008(H1N1))...  44.1    0.005
gb|CY034588.1|  Influenza A virus (A/South Carolina/AF1958/200...  44.1    0.005
gb|CY034587.1|  Influenza A virus (A/South Carolina/AF1957/200...  44.1    0.005
gb|CY034586.1|  Influenza A virus (A/Oklahoma/AF1956/2008(H1N1...  44.1    0.005
gb|CY034585.1|  Influenza A virus (A/Texas/AF1955/2008(H1N1)) ...  44.1    0.005
gb|CY034584.1|  Influenza A virus (A/Colorado/AF1954/2008(H1N1...  44.1    0.005
gb|CY034583.1|  Influenza A virus (A/Texas/AF1953/2008(H1N1)) ...  44.1    0.005
gb|CY034582.1|  Influenza A virus (A/Alabama/AF1952/2008(H1N1)...  44.1    0.005
gb|CY034580.1|  Influenza A virus (A/Texas/AF1950/2008(H1N1)) ...  44.1    0.005
gb|CY034579.1|  Influenza A virus (A/Maryland/AF1949/2008(H1N1...  44.1    0.005
gb|CY034578.1|  Influenza A virus (A/Washington/AF1948/2008(H1...  44.1    0.005
gb|CY034577.1|  Influenza A virus (A/South Carolina/AF1947/200...  44.1    0.005
gb|CY034576.1|  Influenza A virus (A/Nevada/AF1946/2008(H1N1))...  44.1    0.005
gb|CY034575.1|  Influenza A virus (A/Texas/AF1945/2008(H1N1)) ...  44.1    0.005
gb|CY034574.1|  Influenza A virus (A/Alaska/AF1944/2008(H1N1))...  44.1    0.005
gb|CY034573.1|  Influenza A virus (A/Oklahoma/AF1943/2008(H1N1...  44.1    0.005
gb|CY034572.1|  Influenza A virus (A/Texas/AF1936/2008(H1N1)) ...  44.1    0.005
gb|CY034571.1|  Influenza A virus (A/South Carolina/AF1935/200...  44.1    0.005
gb|CY034570.1|  Influenza A virus (A/Florida/AF1931/2008(H1N1)...  44.1    0.005
gb|CY034569.1|  Influenza A virus (A/Washington/AF1930/2008(H1...  44.1    0.005
gb|CY034568.1|  Influenza A virus (A/Washington/AF1929/2008(H1...  44.1    0.005
gb|CY034567.1|  Influenza A virus (A/Washington/AF1928/2008(H1...  44.1    0.005
gb|CY034566.1|  Influenza A virus (A/Washington/AF1927/2008(H1...  44.1    0.005
gb|CY034564.1|  Influenza A virus (A/Washington/AF1925/2008(H1...  44.1    0.005
gb|CY034563.1|  Influenza A virus (A/Washington/AF1924/2008(H1...  44.1    0.005
gb|CY034562.1|  Influenza A virus (A/Washington/AF1923/2008(H1...  44.1    0.005
gb|CY034561.1|  Influenza A virus (A/Washington/AF1922/2008(H1...  44.1    0.005
gb|CY034560.1|  Influenza A virus (A/Washington/AF1921/2008(H1...  44.1    0.005
gb|CY034559.1|  Influenza A virus (A/Washington/AF1920/2008(H1...  44.1    0.005
gb|CY034557.1|  Influenza A virus (A/Washington/AF1918/2008(H1...  44.1    0.005
gb|CY034556.1|  Influenza A virus (A/Washington/AF1917/2008(H1...  44.1    0.005
gb|CY034555.1|  Influenza A virus (A/Washington/AF1916/2008(H1...  44.1    0.005
gb|CY034554.1|  Influenza A virus (A/Washington/AF1915/2008(H1...  44.1    0.005
gb|CY034553.1|  Influenza A virus (A/Washington/AF1914/2008(H1...  44.1    0.005
gb|CY034551.1|  Influenza A virus (A/Washington/AF1912/2008(H1...  44.1    0.005
gb|CY034550.1|  Influenza A virus (A/Washington/AF1911/2008(H1...  44.1    0.005
gb|CY034548.1|  Influenza A virus (A/Washington/AF1909/2008(H1...  44.1    0.005
gb|CY034547.1|  Influenza A virus (A/Hawaii/AF1908/2008(H1N1))...  44.1    0.005
gb|CY034546.1|  Influenza A virus (A/Maryland/AF1905/2008(H1N1...  44.1    0.005
gb|CY034545.1|  Influenza A virus (A/Hawaii/AF1904/2008(H1N1))...  44.1    0.005
gb|CY034544.1|  Influenza A virus (A/Texas/AF1903/2008(H1N1)) ...  44.1    0.005
gb|CY034543.1|  Influenza A virus (A/Oklahoma/AF1901/2008(H1N1...  44.1    0.005
gb|CY034542.1|  Influenza A virus (A/New Mexico/AF1900/2008(H1...  44.1    0.005
gb|CY034539.1|  Influenza A virus (A/Hawaii/AF1896/2008(H1N1))...  44.1    0.005
gb|CY034538.1|  Influenza A virus (A/Hawaii/AF1895/2008(H1N1))...  44.1    0.005
gb|CY034537.1|  Influenza A virus (A/Hawaii/AF1894/2008(H1N1))...  44.1    0.005
gb|CY034536.1|  Influenza A virus (A/South Carolina/AF1893/200...  44.1    0.005
gb|CY034535.1|  Influenza A virus (A/Washington/AF1892/2008(H1...  44.1    0.005
gb|CY034534.1|  Influenza A virus (A/Washington/AF1891/2008(H1...  44.1    0.005
gb|CY034533.1|  Influenza A virus (A/Washington/AF1890/2008(H1...  44.1    0.005
gb|CY034532.1|  Influenza A virus (A/Washington/AF1889/2008(H1...  44.1    0.005
gb|CY034531.1|  Influenza A virus (A/Washington/AF1888/2008(H1...  44.1    0.005
gb|CY034530.1|  Influenza A virus (A/Washington/AF1887/2008(H1...  44.1    0.005
gb|CY034529.1|  Influenza A virus (A/Washington/AF1886/2008(H1...  44.1    0.005
gb|CY034528.1|  Influenza A virus (A/Washington/AF1885/2008(H1...  44.1    0.005
gb|CY034527.1|  Influenza A virus (A/Japan/AF1884/2008(H1N1)) ...  44.1    0.005
gb|CY034526.1|  Influenza A virus (A/Washington/AF1883/2008(H1...  44.1    0.005
gb|CY034525.1|  Influenza A virus (A/Honduras/AF1970/2007(H1N1...  44.1    0.005
gb|CY034524.1|  Influenza A virus (A/Alaska/AF1967/2007(H1N1))...  44.1    0.005
gb|CY034523.1|  Influenza A virus (A/Qatar/AF1966/2007(H1N1)) ...  44.1    0.005
gb|CY034522.1|  Influenza A virus (A/Japan/AF1963/2007(H1N1)) ...  44.1    0.005
gb|CY034512.1|  Influenza A virus (A/Hawaii/AF1906/2007(H1N1))...  44.1    0.005
gb|EU914915.1|  Influenza A virus (A/Johannesburg/35/2008(H1N1...  44.1    0.005
gb|EU914911.1|  Influenza A virus (A/Johannesburg/25/2008(H1N1...  44.1    0.005
gb|EU914910.1|  Influenza A virus (A/Johannesburg/21/2008(H1N1...  44.1    0.005
gb|EU914909.1|  Influenza A virus (A/Johannesburg/10/2008(H1N1...  44.1    0.005
gb|EU876762.1|  Influenza A virus (A/Jiangxi/955/2006(H1N1)) h...  44.1    0.005
gb|EU876761.1|  Influenza A virus (A/Jiangxi/748/2005(H1N1)) h...  44.1    0.005
gb|EU876759.1|  Influenza A virus (A/Jiangxi/678/2005(H1N1)) h...  44.1    0.005
gb|EU876758.1|  Influenza A virus (A/Jiangxi/1163/2006(H1N1)) ...  44.1    0.005
gb|EU876757.1|  Influenza A virus (A/Jiangxi/1150/2006(H1N1)) ...  44.1    0.005
gb|EU876756.1|  Influenza A virus (A/Jiangxi/1140/2006(H1N1)) ...  44.1    0.005
gb|EU876755.1|  Influenza A virus (A/Jiangxi/1105/2006(H1N1)) ...  44.1    0.005
gb|EU876754.1|  Influenza A virus (A/Jiangxi/1085/2006(H1N1)) ...  44.1    0.005
gb|EU876753.1|  Influenza A virus (A/Jiangxi/1062/2006(H1N1)) ...  44.1    0.005
gb|EU876752.1|  Influenza A virus (A/Jiangxi/94/2006(H1N1)) he...  44.1    0.005
gb|EU876751.1|  Influenza A virus (A/Jiangxi/8/2006(H1N1)) hem...  44.1    0.005
gb|EU876750.1|  Influenza A virus (A/Jiangxi/595/2006(H1N1)) h...  44.1    0.005
gb|EU876748.1|  Influenza A virus (A/Jiangxi/272/2006(H1N1)) h...  44.1    0.005
gb|EU551849.1|  Influenza A virus (A/Paris/438/2007(H1N1)) hem...  44.1    0.005
gb|EU551848.1|  Influenza A virus (A/Paris/194/2007(H1N1)) hem...  44.1    0.005
gb|EU551847.1|  Influenza A virus (A/Paris/611/2007(H1N1)) hem...  44.1    0.005
gb|EU551846.1|  Influenza A virus (A/Paris/1208/2008(H1N1)) he...  44.1    0.005
gb|EU551845.1|  Influenza A virus (A/Paris/658/2007(H1N1)) hem...  44.1    0.005
gb|EU551842.1|  Influenza A virus (A/Paris/1154/2008(H1N1)) he...  44.1    0.005
gb|EU551838.1|  Influenza A virus (A/Paris/286/2007(H1N1)) hem...  44.1    0.005
gb|EU551837.1|  Influenza A virus (A/Paris/546/2007(H1N1)) hem...  44.1    0.005
gb|EU551834.1|  Influenza A virus (A/Paris/847/2007(H1N1)) hem...  44.1    0.005
gb|EU551833.1|  Influenza A virus (A/Paris/644/2007(H1N1)) hem...  44.1    0.005
gb|EU551831.1|  Influenza A virus (A/Paris/749/2007(H1N1)) hem...  44.1    0.005
gb|EU685786.1|  Influenza A virus (A/Paris/1149/2008(H1N1)) he...  44.1    0.005
gb|EU685785.1|  Influenza A virus (A/Paris/1170/2008(H1N1)) he...  44.1    0.005
gb|CY034124.1|  Influenza A virus (A/NYMC X-163(NYMC X-157-St....  44.1    0.005
gb|EU887034.1|  Influenza A virus (A/South Carolina/01/2008(H1...  44.1    0.005
gb|EU887032.1|  Influenza A virus (A/New Jersey/13/2008(H1N1))...  44.1    0.005
gb|EU887031.1|  Influenza A virus (A/Idaho/01/2008(H1N1)) segm...  44.1    0.005
gb|EU887030.1|  Influenza A virus (A/Wisconsin/01/2008(H1N1)) ...  44.1    0.005
gb|EU887029.1|  Influenza A virus (A/North Dakota/05/2007(H1N1...  44.1    0.005
gb|EU887026.1|  Influenza A virus (A/Pennsylvania/15/2007(H1N1...  44.1    0.005
gb|EU887025.1|  Influenza A virus (A/Pennsylvania/14/2007(H1N1...  44.1    0.005
gb|EU887024.1|  Influenza A virus (A/Pennsylvania/14/2007(H1N1...  44.1    0.005
gb|EU887023.1|  Influenza A virus (A/Florida/15/2007(H1N1)) se...  44.1    0.005
gb|EU887022.1|  Influenza A virus (A/Florida/13/2007(H1N1)) se...  44.1    0.005
gb|EU887019.1|  Influenza A virus (A/Hawaii/39/2007(H1N1)) seg...  44.1    0.005
gb|EU851990.1|  Influenza A virus (A/Vermont/01/2008(H1N1)) se...  44.1    0.005
gb|EU851987.1|  Influenza A virus (A/New York/05/2008(H1N1)) s...  44.1    0.005
gb|EU851985.1|  Influenza A virus (A/Minnesota/01/2008(H1N1)) ...  44.1    0.005
gb|EU851983.1|  Influenza A virus (A/Mississippi/06/2008(H1N1)...  44.1    0.005
gb|EU851981.1|  Influenza A virus (A/Hawaii/02/2008(H1N1)) seg...  44.1    0.005
gb|EU851979.1|  Influenza A virus (A/Hawaii/01/2008(H1N1)) seg...  44.1    0.005
gb|EU851978.1|  Influenza A virus (A/Wisconsin/36/2007(H1N1)) ...  44.1    0.005
gb|EU770368.1|  Influenza A virus (A/Mbagathi/4841/2007(H1N1))...  44.1    0.005
gb|EU770367.1|  Influenza A virus (A/Mbagathi/4833/2007(H1N1))...  44.1    0.005
gb|EU770366.1|  Influenza A virus (A/Kericho/4831/2007(H1N1)) ...  44.1    0.005
gb|EU770365.1|  Influenza A virus (A/Kisumu/4830/2007(H1N1)) h...  44.1    0.005
gb|EU770364.1|  Influenza A virus (A/Mbagathi/4827/2007(H1N1))...  44.1    0.005
gb|EU770363.1|  Influenza A virus (A/Mbagathi/4826/2007(H1N1))...  44.1    0.005
gb|EU770362.1|  Influenza A virus (A/Mbagathi/4825/2007(H1N1))...  44.1    0.005
gb|EU770361.1|  Influenza A virus (A/Kisii/4824/2007(H1N1)) he...  44.1    0.005
gb|EU770360.1|  Influenza A virus (A/Kisii/4823/2007(H1N1)) he...  44.1    0.005
gb|EU770359.1|  Influenza A virus (A/Kericho/4822/2007(H1N1)) ...  44.1    0.005
gb|EU770358.1|  Influenza A virus (A/Mbagathi/4819/2007(H1N1))...  44.1    0.005
gb|EU770357.1|  Influenza A virus (A/Mbagathi/4844/2007(H1N1))...  44.1    0.005
gb|EU770356.1|  Influenza A virus (A/Mbagathi/4840/2007(H1N1))...  44.1    0.005
gb|EU770355.1|  Influenza A virus (A/Kisii/4839/2007(H1N1)) he...  44.1    0.005
gb|EU770354.1|  Influenza A virus (A/Malindi/4838/2007(H1N1)) ...  44.1    0.005
gb|EU770353.1|  Influenza A virus (A/Malindi/4837/2007(H1N1)) ...  44.1    0.005
gb|EU770352.1|  Influenza A virus (A/Malindi/4836/2007(H1N1)) ...  44.1    0.005
gb|EU770351.1|  Influenza A virus (A/Malindi/4835/2007(H1N1)) ...  44.1    0.005
gb|EU770350.1|  Influenza A virus (A/Mbagathi/4834/2007(H1N1))...  44.1    0.005
gb|EU791307.1|  Influenza A virus (A/Ulaanbaatar/1809/2007(H1)...  44.1    0.005
gb|EU791303.1|  Influenza A virus (A/Orkhon/1901/2007(H1)) seg...  44.1    0.005
gb|EU791301.1|  Influenza A virus (A/Ulaanbaatar/1830/2007(H1)...  44.1    0.005
gb|EU791299.1|  Influenza A virus (A/Sainshand/1142/2007(H1)) ...  44.1    0.005
gb|EU791297.1|  Influenza A virus (A/Ulaanbaatar/1094/2007(H1)...  44.1    0.005
gb|EU779634.1|  Influenza A virus (A/Illinois/06/2008(H1N1)) h...  44.1    0.005
gb|EU779633.1|  Influenza A virus (A/Nebraska/01/2008(H1N1)) h...  44.1    0.005
gb|EU779632.1|  Influenza A virus (A/California/06/2008(H1N1))...  44.1    0.005
gb|EU779631.1|  Influenza A virus (A/California/05/2008(H1N1))...  44.1    0.005
gb|EU779630.1|  Influenza A virus (A/Georgia/06/2008(H1N1)) he...  44.1    0.005
gb|EU779629.1|  Influenza A virus (A/Georgia/05/2008(H1N1)) he...  44.1    0.005
gb|EU779628.1|  Influenza A virus (A/North Carolina/05/2008(H1...  44.1    0.005
gb|EU779627.1|  Influenza A virus (A/North Carolina/04/2008(H1...  44.1    0.005
gb|EU779626.1|  Influenza A virus (A/North Carolina/02/2008(H1...  44.1    0.005
gb|EU779625.1|  Influenza A virus (A/Indiana/04/2008(H1N1)) he...  44.1    0.005
gb|EU779624.1|  Influenza A virus (A/Oklahoma/03/2008(H1N1)) h...  44.1    0.005
gb|EU779623.1|  Influenza A virus (A/Oklahoma/02/2008(H1N1)) h...  44.1    0.005
gb|EU779622.1|  Influenza A virus (A/Wyoming/10/2008(H1N1)) he...  44.1    0.005
gb|EU779621.1|  Influenza A virus (A/Mississippi/06/2008(H1N1)...  44.1    0.005
gb|EU779620.1|  Influenza A virus (A/Hawaii/06/2008(H1N1)) hem...  44.1    0.005
gb|EU779619.1|  Influenza A virus (A/Hawaii/05/2008(H1N1)) hem...  44.1    0.005
gb|EU779618.1|  Influenza A virus (A/New Jersey/10/2008(H1N1))...  44.1    0.005
gb|EU779617.1|  Influenza A virus (A/Memphis/07/2008(H1N1)) he...  44.1    0.005
gb|EU779616.1|  Influenza A virus (A/Memphis/03/2008(H1N1)) he...  44.1    0.005
gb|EU779615.1|  Influenza A virus (A/Florida/09/2008(H1N1)) he...  44.1    0.005
gb|EU779614.1|  Influenza A virus (A/New York/03/2008(H1N1)) h...  44.1    0.005
gb|EU779613.1|  Influenza A virus (A/South Dakota/02/2008(H1N1...  44.1    0.005
gb|EU779612.1|  Influenza A virus (A/Hawaii/46/2007(H1N1)) hem...  44.1    0.005
gb|EU779611.1|  Influenza A virus (A/Louisiana/03/2008(H1N1)) ...  44.1    0.005
gb|EU779610.1|  Influenza A virus (A/Florida/08/2008(H1N1)) he...  44.1    0.005
gb|EU716621.1|  Influenza A virus (A/Florida/19/2007(H1N1)) se...  44.1    0.005
gb|EU716619.1|  Influenza A virus (A/New Jersey/09/2008(H1N1))...  44.1    0.005
gb|EU716603.1|  Influenza A virus (A/Hawaii/42/2007(H1N1)) seg...  44.1    0.005
gb|EU716601.1|  Influenza A virus (A/Hawaii/43/2007(H1N1)) seg...  44.1    0.005
gb|EU716598.1|  Influenza A virus (A/Washington/01/2008(H1N1))...  44.1    0.005
gb|EU716596.1|  Influenza A virus (A/Maryland/01/2008(H1N1)) s...  44.1    0.005
gb|EU716585.1|  Influenza A virus (A/Florida/19/2007(H1N1)) se...  44.1    0.005
gb|EU716578.1|  Influenza A virus (A/South Dakota/06/2007(H1N1...  44.1    0.005
gb|EU716574.1|  Influenza A virus (A/Florida/02/2008(H1N1)) se...  44.1    0.005
gb|EU716572.1|  Influenza A virus (A/California/26/2007(H1N1))...  44.1    0.005
gb|EU716571.1|  Influenza A virus (A/Idaho/02/2008(H1N1)) segm...  44.1    0.005
gb|EU716570.1|  Influenza A virus (A/Hawaii/44/2007(H1N1)) seg...  44.1    0.005
gb|EU716569.1|  Influenza A virus (A/California/10/2006(H1N1))...  44.1    0.005
gb|EU716563.1|  Influenza A virus (A/New York/01/2008(H1N1)) s...  44.1    0.005
gb|EU716559.1|  Influenza A virus (A/Pennsylvania/16/2007(H1N1...  44.1    0.005
gb|EU716557.1|  Influenza A virus (A/Pennsylvania/11/2007(H1N1...  44.1    0.005
gb|EU716556.1|  Influenza A virus (A/Pennsylvania/16/2007(H1N1...  44.1    0.005
gb|EU716555.1|  Influenza A virus (A/Alaska/03/2008(H1N1)) seg...  44.1    0.005
gb|EU716548.1|  Influenza A virus (A/New Jersey/08/2008(H1N1))...  44.1    0.005
gb|EU716540.1|  Influenza A virus (A/Alaska/02/2008(H1N1)) seg...  44.1    0.005
gb|EU716538.1|  Influenza A virus (A/Colorado/39/2007(H1N1)) s...  44.1    0.005
gb|EU716531.1|  Influenza A virus (A/Hawaii/45/2007(H1N1)) seg...  44.1    0.005
gb|EU716526.1|  Influenza A virus (A/Colorado/01/2008(H1N1)) s...  44.1    0.005
gb|CY031530.1|  Influenza A virus (A/Washington/AF1348/2008(H1...  44.1    0.005
gb|CY031529.1|  Influenza A virus (A/Washington/AF1347/2008(H1...  44.1    0.005
gb|CY031528.1|  Influenza A virus (A/Washington/AF1346/2008(H1...  44.1    0.005
gb|CY031527.1|  Influenza A virus (A/Washington/AF1345/2008(H1...  44.1    0.005
gb|CY031526.1|  Influenza A virus (A/Washington/AF1344/2008(H1...  44.1    0.005
gb|CY031525.1|  Influenza A virus (A/Washington/AF1343/2008(H1...  44.1    0.005
gb|CY031524.1|  Influenza A virus (A/Washington/AF1342/2008(H1...  44.1    0.005
gb|CY031523.1|  Influenza A virus (A/Washington/AF1341/2008(H1...  44.1    0.005
gb|CY031522.1|  Influenza A virus (A/Washington/AF1340/2008(H1...  44.1    0.005
gb|CY031521.1|  Influenza A virus (A/Washington/AF1339/2008(H1...  44.1    0.005
gb|CY031519.1|  Influenza A virus (A/Washington/AF1337/2008(H1...  44.1    0.005
gb|CY031518.1|  Influenza A virus (A/Washington/AF1336/2008(H1...  44.1    0.005
gb|CY031517.1|  Influenza A virus (A/Washington/AF1335/2008(H1...  44.1    0.005
gb|CY031515.1|  Influenza A virus (A/Washington/AF1333/2008(H1...  44.1    0.005
gb|CY031514.1|  Influenza A virus (A/Washington/AF1332/2008(H1...  44.1    0.005
gb|CY031513.1|  Influenza A virus (A/Washington/AF1331/2008(H1...  44.1    0.005
gb|CY031512.1|  Influenza A virus (A/Texas/AF1328/2008(H1N1)) ...  44.1    0.005
gb|CY031511.1|  Influenza A virus (A/Texas/AF1326/2008(H1N1)) ...  44.1    0.005
gb|CY031510.1|  Influenza A virus (A/Texas/AF1325/2008(H1N1)) ...  44.1    0.005
gb|CY031509.1|  Influenza A virus (A/Texas/AF1324/2008(H1N1)) ...  44.1    0.005
gb|CY031508.1|  Influenza A virus (A/Texas/AF1323/2008(H1N1)) ...  44.1    0.005
gb|CY031507.1|  Influenza A virus (A/Texas/AF1322/2008(H1N1)) ...  44.1    0.005
gb|CY031505.1|  Influenza A virus (A/Texas/AF1320/2008(H1N1)) ...  44.1    0.005
gb|CY031504.1|  Influenza A virus (A/Texas/AF1319/2008(H1N1)) ...  44.1    0.005
gb|CY031503.1|  Influenza A virus (A/Texas/AF1318/2008(H1N1)) ...  44.1    0.005
gb|CY031502.1|  Influenza A virus (A/Texas/AF1317/2008(H1N1)) ...  44.1    0.005
gb|CY031501.1|  Influenza A virus (A/Texas/AF1316/2008(H1N1)) ...  44.1    0.005
gb|CY031500.1|  Influenza A virus (A/Texas/AF1315/2008(H1N1)) ...  44.1    0.005
gb|CY031499.1|  Influenza A virus (A/Texas/AF1314/2008(H1N1)) ...  44.1    0.005
gb|CY031492.1|  Influenza A virus (A/South Dakota/AF1301/2008(...  44.1    0.005
gb|CY031491.1|  Influenza A virus (A/South Dakota/AF1300/2008(...  44.1    0.005
gb|CY031490.1|  Influenza A virus (A/South Carolina/AF1299/200...  44.1    0.005
gb|CY031489.1|  Influenza A virus (A/South Carolina/AF1298/200...  44.1    0.005
gb|CY031488.1|  Influenza A virus (A/South Carolina/AF1297/200...  44.1    0.005
gb|CY031487.1|  Influenza A virus (A/Oklahoma/AF1294/2008(H1N1...  44.1    0.005
gb|CY031486.1|  Influenza A virus (A/Oklahoma/AF1293/2008(H1N1...  44.1    0.005
gb|CY031485.1|  Influenza A virus (A/North Carolina/AF1292/200...  44.1    0.005
gb|CY031484.1|  Influenza A virus (A/New Jersey/AF1291/2008(H1...  44.1    0.005
gb|CY031483.1|  Influenza A virus (A/Nebraska/AF1290/2008(H1N1...  44.1    0.005
gb|CY031482.1|  Influenza A virus (A/Nebraska/AF1289/2008(H1N1...  44.1    0.005
gb|CY031481.1|  Influenza A virus (A/Nebraska/AF1288/2008(H1N1...  44.1    0.005
gb|CY031480.1|  Influenza A virus (A/Nebraska/AF1287/2008(H1N1...  44.1    0.005
gb|CY031479.1|  Influenza A virus (A/Maryland/AF1286/2008(H1N1...  44.1    0.005
gb|CY031478.1|  Influenza A virus (A/Maryland/AF1285/2008(H1N1...  44.1    0.005
gb|CY031477.1|  Influenza A virus (A/Maryland/AF1284/2008(H1N1...  44.1    0.005
gb|CY031476.1|  Influenza A virus (A/Maryland/AF1283/2008(H1N1...  44.1    0.005
gb|CY031475.1|  Influenza A virus (A/Maryland/AF1282/2008(H1N1...  44.1    0.005
gb|CY031474.1|  Influenza A virus (A/Maryland/AF1281/2008(H1N1...  44.1    0.005
gb|CY031473.1|  Influenza A virus (A/Maryland/AF1280/2008(H1N1...  44.1    0.005
gb|CY031472.1|  Influenza A virus (A/Japan/AF1277/2008(H1N1)) ...  44.1    0.005
gb|CY031471.1|  Influenza A virus (A/Japan/AF1276/2008(H1N1)) ...  44.1    0.005
gb|CY031469.1|  Influenza A virus (A/Japan/AF1274/2008(H1N1)) ...  44.1    0.005
gb|CY031468.1|  Influenza A virus (A/Japan/AF1273/2008(H1N1)) ...  44.1    0.005
gb|CY031467.1|  Influenza A virus (A/Japan/AF1272/2008(H1N1)) ...  44.1    0.005
gb|CY031466.1|  Influenza A virus (A/Japan/AF1271/2008(H1N1)) ...  44.1    0.005
gb|CY031465.1|  Influenza A virus (A/Hawaii/AF1249/2008(H1N1))...  44.1    0.005
gb|CY031464.1|  Influenza A virus (A/Hawaii/AF1248/2008(H1N1))...  44.1    0.005
gb|CY031463.1|  Influenza A virus (A/Florida/AF1222/2008(H1N1)...  44.1    0.005
gb|CY031462.1|  Influenza A virus (A/Florida/AF1221/2008(H1N1)...  44.1    0.005
gb|CY031461.1|  Influenza A virus (A/Florida/AF1220/2008(H1N1)...  44.1    0.005
gb|CY031460.1|  Influenza A virus (A/Colorado/AF1219/2008(H1N1...  44.1    0.005
gb|CY031459.1|  Influenza A virus (A/Colorado/AF1218/2008(H1N1...  44.1    0.005
gb|CY031458.1|  Influenza A virus (A/Colorado/AF1217/2008(H1N1...  44.1    0.005
gb|CY031457.1|  Influenza A virus (A/California/AF1214/2008(H1...  44.1    0.005
gb|CY031456.1|  Influenza A virus (A/Arkansas/AF1213/2008(H1N1...  44.1    0.005
gb|CY031455.1|  Influenza A virus (A/Alabama/AF1210/2008(H1N1)...  44.1    0.005
gb|CY031452.1|  Influenza A virus (A/Texas/AF1327/2007(H1N1)) ...  44.1    0.005
gb|CY031447.1|  Influenza A virus (A/South Dakota/AF1303/2007(...  44.1    0.005
gb|CY031446.1|  Influenza A virus (A/South Dakota/AF1302/2007(...  44.1    0.005
gb|CY031443.1|  Influenza A virus (A/Japan/AF1279/2007(H1N1)) ...  44.1    0.005
gb|CY031442.1|  Influenza A virus (A/Japan/AF1278/2007(H1N1)) ...  44.1    0.005
gb|CY031436.1|  Influenza A virus (A/Hawaii/AF1265/2007(H1N1))...  44.1    0.005
gb|CY031435.1|  Influenza A virus (A/Hawaii/AF1264/2007(H1N1))...  44.1    0.005
gb|CY031434.1|  Influenza A virus (A/Hawaii/AF1263/2007(H1N1))...  44.1    0.005
gb|CY031433.1|  Influenza A virus (A/Hawaii/AF1262/2007(H1N1))...  44.1    0.005
gb|CY031432.1|  Influenza A virus (A/Hawaii/AF1261/2007(H1N1))...  44.1    0.005
gb|CY031431.1|  Influenza A virus (A/Hawaii/AF1260/2007(H1N1))...  44.1    0.005
gb|CY031430.1|  Influenza A virus (A/Hawaii/AF1259/2007(H1N1))...  44.1    0.005
gb|CY031429.1|  Influenza A virus (A/Hawaii/AF1258/2007(H1N1))...  44.1    0.005
gb|CY031427.1|  Influenza A virus (A/Hawaii/AF1256/2007(H1N1))...  44.1    0.005
gb|CY031424.1|  Influenza A virus (A/Hawaii/AF1253/2007(H1N1))...  44.1    0.005
gb|CY031423.1|  Influenza A virus (A/Hawaii/AF1252/2007(H1N1))...  44.1    0.005
gb|CY031422.1|  Influenza A virus (A/Hawaii/AF1251/2007(H1N1))...  44.1    0.005
gb|CY031421.1|  Influenza A virus (A/Hawaii/AF1250/2007(H1N1))...  44.1    0.005
gb|CY031395.1|  Influenza A virus (A/Colorado/AF1216/2007(H1N1...  44.1    0.005
gb|CY031394.1|  Influenza A virus (A/Colorado/AF1215/2007(H1N1...  44.1    0.005
gb|CY031393.1|  Influenza A virus (A/Alaska/AF1212/2007(H1N1))...  44.1    0.005
gb|CY031392.1|  Influenza A virus (A/Alaska/AF1211/2007(H1N1))...  44.1    0.005
gb|CY031388.1|  Influenza A virus (A/Auckland/8/2007(H1N1)) se...  44.1    0.005
gb|CY031384.1|  Influenza A virus (A/Lyon/1337/2007(H1N1)) seg...  44.1    0.005
gb|CY031382.1|  Influenza A virus (A/Thailand/545/2007(H1N1)) ...  44.1    0.005
gb|CY031378.1|  Influenza A virus (A/Sydney/142/2007(H1N1)) se...  44.1    0.005
gb|CY031374.1|  Influenza A virus (A/Sydney/581/2007(H1N1)) se...  44.1    0.005
gb|CY031372.1|  Influenza A virus (A/South Australia/423//2007...  44.1    0.005
gb|CY031366.1|  Influenza A virus (A/Perth/73/2007(H1N1)) segm...  44.1    0.005
gb|CY031364.1|  Influenza A virus (A/Johannesburg/67/2007(H1N1...  44.1    0.005
gb|CY031358.1|  Influenza A virus (A/Waikato/01/2007(H1N1)) se...  44.1    0.005
gb|CY031356.1|  Influenza A virus (A/Sri Lanka/22/2007(H1N1)) ...  44.1    0.005
gb|CY031352.1|  Influenza A virus (A/Jeju/2279/2007(H1N1)) seg...  44.1    0.005
gb|CY031350.1|  Influenza A virus (A/Macau/189/2007(H1N1)) seg...  44.1    0.005
gb|CY031348.1|  Influenza A virus (A/Victoria/501/2007(H1N1)) ...  44.1    0.005
gb|CY031344.1|  Influenza A virus (A/Thailand/798/2006(H1N1)) ...  44.1    0.005
gb|CY031342.1|  Influenza A virus (A/Hong Kong/2652/2006(H1N1)...  44.1    0.005
gb|CY031340.1|  Influenza A virus (A/Solomon Islands/3/2006(H1...  44.1    0.005
gb|CY031338.1|  Influenza A virus (A/Philippines/673/2006(H1N1...  44.1    0.005
gb|CY031334.1|  Influenza A virus (A/Victoria/500/2006(H1N1)) ...  44.1    0.005
gb|CY031330.1|  Influenza A virus (A/New Caledonia/9/2004(H1N1...  44.1    0.005
gb|CY031307.1|  Influenza A virus (A/Kuwait/AF1207/2007(H1N1))...  44.1    0.005
gb|CY031306.1|  Influenza A virus (A/Qatar/AF1206/2007(H1N1)) ...  44.1    0.005
gb|CY031305.1|  Influenza A virus (A/Qatar/AF1205/2007(H1N1)) ...  44.1    0.005
gb|CY031304.1|  Influenza A virus (A/Iraq/AF1204/2007(H1N1)) s...  44.1    0.005
gb|CY031303.1|  Influenza A virus (A/Iraq/AF1203/2007(H1N1)) s...  44.1    0.005
gb|CY031302.1|  Influenza A virus (A/Iraq/AF1202/2007(H1N1)) s...  44.1    0.005
gb|CY031301.1|  Influenza A virus (A/Iraq/AF1201/2007(H1N1)) s...  44.1    0.005
gb|CY031300.1|  Influenza A virus (A/Iraq/AF1200/2007(H1N1)) s...  44.1    0.005
gb|CY031299.1|  Influenza A virus (A/Iraq/AF1199/2007(H1N1)) s...  44.1    0.005
gb|CY031298.1|  Influenza A virus (A/Iraq/AF1198/2007(H1N1)) s...  44.1    0.005
gb|CY031297.1|  Influenza A virus (A/Iraq/AF1197/2007(H1N1)) s...  44.1    0.005
gb|CY031296.1|  Influenza A virus (A/Iraq/AF1196/2007(H1N1)) s...  44.1    0.005
gb|CY031295.1|  Influenza A virus (A/Iraq/AF1195/2007(H1N1)) s...  44.1    0.005
gb|CY031294.1|  Influenza A virus (A/Iraq/AF1194/2007(H1N1)) s...  44.1    0.005
gb|CY031293.1|  Influenza A virus (A/Iraq/AF1193/2007(H1N1)) s...  44.1    0.005
gb|CY031292.1|  Influenza A virus (A/Iraq/AF1192/2007(H1N1)) s...  44.1    0.005
gb|CY031291.1|  Influenza A virus (A/Iraq/AF1191/2007(H1N1)) s...  44.1    0.005
gb|CY031290.1|  Influenza A virus (A/Iraq/AF1190/2007(H1N1)) s...  44.1    0.005
gb|CY031289.1|  Influenza A virus (A/Iraq/AF1189/2007(H1N1)) s...  44.1    0.005
gb|CY031288.1|  Influenza A virus (A/Iraq/AF1188/2007(H1N1)) s...  44.1    0.005
gb|EU624319.1|  Influenza A virus (A/England/557/2007(H1N1)) s...  44.1    0.005
gb|EU624318.1|  Influenza A virus (A/England/545/2007(H1N1)) s...  44.1    0.005
gb|EU068168.1|  Influenza A virus (A/Taiwan/2069/2006(H1N1)) h...  44.1    0.005
gb|EU068167.1|  Influenza A virus (A/Taiwan/5010/2006(H1N1)) h...  44.1    0.005
gb|EU068166.1|  Influenza A virus (A/Taiwan/5084/2006(H1N1)) h...  44.1    0.005
gb|EU068165.1|  Influenza A virus (A/Taiwan/4509/2006(H1N1)) h...  44.1    0.005
gb|EU068164.1|  Influenza A virus (A/Taiwan/645/2006(H1N1)) he...  44.1    0.005
gb|EU068163.1|  Influenza A virus (A/Taiwan/1007/2006(H1N1)) h...  44.1    0.005
gb|EU068162.1|  Influenza A virus (A/Taiwan/615/2006(H1N1)) he...  44.1    0.005
gb|EU068161.1|  Influenza A virus (A/Taiwan/2195/2006(H1N1)) h...  44.1    0.005
gb|EU068160.1|  Influenza A virus (A/Taiwan/4054/2006(H1N1)) h...  44.1    0.005
gb|EU068159.1|  Influenza A virus (A/Taiwan/562/2006(H1N1)) he...  44.1    0.005
gb|EU068158.1|  Influenza A virus (A/Taiwan/719/2006(H1N1)) he...  44.1    0.005
gb|EU068157.1|  Influenza A virus (A/Taiwan/607/2006(H1N1)) he...  44.1    0.005
gb|EU068156.1|  Influenza A virus (A/Taiwan/557/2006(H1N1)) he...  44.1    0.005
gb|EU567007.2|  Influenza A virus (A/New Jersey/04/2008(H1N1))...  44.1    0.005
gb|EU097956.1|  Influenza A virus (A/Denmark/47/2006(H1N1)) he...  44.1    0.005
gb|EU567015.1|  Influenza A virus (A/New Mexico/07/2007(H1N1))...  44.1    0.005
gb|EU567013.1|  Influenza A virus (A/New Jersey/05/2008(H1N1))...  44.1    0.005
gb|EU566993.1|  Influenza A virus (A/New Jersey/03/2008(H1N1))...  44.1    0.005
gb|EU566991.1|  Influenza A virus (A/Arizona/04/2007(H1N1)) se...  44.1    0.005
gb|EU566990.1|  Influenza A virus (A/Wisconsin/35/2007(H1N1)) ...  44.1    0.005
gb|EU566989.1|  Influenza A virus (A/New Mexico/01/2008(H1N1))...  44.1    0.005
gb|EU566986.1|  Influenza A virus (A/New Jersey/02/2008(H1N1))...  44.1    0.005
gb|EU566984.1|  Influenza A virus (A/Pennsylvania/05/2008(H1N1...  44.1    0.005
gb|EU566982.1|  Influenza A virus (A/New Jersey/20/2007(H1N1))...  44.1    0.005
gb|EU566981.1|  Influenza A virus (A/Illinois/17/2007(H1N1)) s...  44.1    0.005
gb|EU566979.1|  Influenza A virus (A/New Jersey/06/2008(H1N1))...  44.1    0.005
gb|EU566976.1|  Influenza A virus (A/Pennsylvania/02/2008(H1N1...  44.1    0.005
gb|EU566975.1|  Influenza A virus (A/Indiana/01/2008(H1N1)) se...  44.1    0.005
gb|EU566970.1|  Influenza A virus (A/Maryland/04/2007(H1N1)) s...  44.1    0.005
gb|EU566966.1|  Influenza A virus (A/Arizona/15/2007(H1N1)) se...  44.1    0.005
gb|CY030876.1|  Influenza A virus (A/Christchurch/62/2007(H1N1...  44.1    0.005
gb|CY030874.1|  Influenza A virus (A/Brisbane/308/2007(H1N1)) ...  44.1    0.005
gb|CY030870.1|  Influenza A virus (A/Brisbane/334/2007(H1N1)) ...  44.1    0.005
gb|CY030869.1|  Influenza A virus (A/Brisbane/297/2006(H1N1)) ...  44.1    0.005
gb|CY030867.1|  Influenza A virus (A/Philippines/905/2006(H1N1...  44.1    0.005
gb|CY030865.1|  Influenza A virus (A/Philippines/604/2006(H1N1...  44.1    0.005
gb|CY030863.1|  Influenza A virus (A/Philippines/1279/2006(H1N...  44.1    0.005
gb|CY030235.1|  Influenza A Virus (A/Singapore/66/2006(H1N1)) ...  44.1    0.005
gb|EU516303.1|  Influenza A virus (A/Washington/28/2007(H1N1))...  44.1    0.005
gb|EU516302.1|  Influenza A virus (A/Colorado/33/2007(H1N1)) s...  44.1    0.005
gb|EU516301.1|  Influenza A virus (A/Washington/40/2007(H1N1))...  44.1    0.005
gb|EU516300.1|  Influenza A virus (A/Pennsylvania/01/2008(H1N1...  44.1    0.005
gb|EU516299.1|  Influenza A virus (A/California/27/2007(H1N1))...  44.1    0.005
gb|EU516298.1|  Influenza A virus (A/Florida/15/2007(H1N1)) se...  44.1    0.005
gb|EU516294.1|  Influenza A virus (A/California/40/2007(H1N1))...  44.1    0.005
gb|EU516293.1|  Influenza A virus (A/Florida/12/2007(H1N1)) se...  44.1    0.005
gb|EU516291.1|  Influenza A virus (A/California/39/2007(H1N1))...  44.1    0.005
gb|EU516279.1|  Influenza A virus (A/South Dakota/06/2007(H1N1...  44.1    0.005
gb|EU516259.1|  Influenza A virus (A/Colorado/26/2007(H1N1)) s...  44.1    0.005
gb|EU516258.1|  Influenza A virus (A/New Jersey/16/2007(H1N1))...  44.1    0.005
gb|EU516257.1|  Influenza A virus (A/Illinois/10/2007(H1N1)) s...  44.1    0.005
gb|EU516256.1|  Influenza A virus (A/Alaska/13/2007(H1N1)) seg...  44.1    0.005
gb|EU516255.1|  Influenza A virus (A/Texas/74/2007(H1N1)) segm...  44.1    0.005
gb|EU516254.1|  Influenza A virus (A/Alaska/11/2007(H1N1)) seg...  44.1    0.005
gb|EU516253.1|  Influenza A virus (A/Washington/33/2007(H1N1))...  44.1    0.005
gb|EU516252.1|  Influenza A virus (A/Colorado/21/2007(H1N1)) s...  44.1    0.005
gb|EU516251.1|  Influenza A virus (A/New York/16/2007(H1N1)) s...  44.1    0.005
gb|EU516250.1|  Influenza A virus (A/Florida/10/2007(H1N1)) se...  44.1    0.005
gb|EU516248.1|  Influenza A virus (A/Colorado/27/2007(H1N1)) s...  44.1    0.005
gb|EU516247.1|  Influenza A virus (A/Massachusetts/14/2007(H1N...  44.1    0.005
gb|EU516246.1|  Influenza A virus (A/Arizona/07/2007(H1N1)) se...  44.1    0.005
gb|EU516245.1|  Influenza A virus (A/Texas/78/2007(H1N1)) segm...  44.1    0.005
gb|EU516244.1|  Influenza A virus (A/Colorado/25/2007(H1N1)) s...  44.1    0.005
gb|EU516243.1|  Influenza A virus (A/Arizona/03/2007(H1N1)) se...  44.1    0.005
gb|EU516242.1|  Influenza A virus (A/Hawaii/39/2007(H1N1)) seg...  44.1    0.005
gb|EU516241.1|  Influenza A virus (A/Iowa/04/2007(H1N1)) segme...  44.1    0.005
gb|EU516240.1|  Influenza A virus (A/Pennsylvania/11/2007(H1N1...  44.1    0.005
gb|EU516239.1|  Influenza A virus (A/Illinois/13/2007(H1N1)) s...  44.1    0.005
gb|EU516238.1|  Influenza A virus (A/Washington/34/2007(H1N1))...  44.1    0.005
gb|EU516237.1|  Influenza A virus (A/Illinois/11/2007(H1N1)) s...  44.1    0.005
gb|EU516143.1|  Influenza A virus (A/New Jersey/09/2007(H1N1))...  44.1    0.005
gb|EU516099.1|  Influenza A virus (A/Alaska/1/2006(H1N1)) segm...  44.1    0.005
gb|EU516097.1|  Influenza A virus (A/Florida/05/2007(H1N1)) se...  44.1    0.005
gb|EU516096.1|  Influenza A virus (A/California/28/2007(H1N1))...  44.1    0.005
gb|EU516095.1|  Influenza A virus (A/Hawaii/28/2007(H1N1)) seg...  44.1    0.005
gb|EU516094.1|  Influenza A virus (A/Minnesota/25/2007(H1N1)) ...  44.1    0.005
gb|EU516093.1|  Influenza A virus (A/Hawaii/28/2007(H1N1)) seg...  44.1    0.005
gb|EU516092.1|  Influenza A virus (A/Georgia/08/2007(H1N1)) se...  44.1    0.005
gb|EU516091.1|  Influenza A virus (A/Pennsylvania/10/2007(H1N1...  44.1    0.005
gb|EU516090.1|  Influenza A virus (A/South Dakota/06/2007(H1N1...  44.1    0.005
gb|EU516089.1|  Influenza A virus (A/Washington/27/2007(H1N1))...  44.1    0.005
gb|EU516088.1|  Influenza A virus (A/Texas/70/2007(H1N1)) segm...  44.1    0.005
gb|EU516087.1|  Influenza A virus (A/Hawaii/19/2007(H1N1)) seg...  44.1    0.005
gb|EU516086.1|  Influenza A virus (A/Texas/41/2007(H1N1)) segm...  44.1    0.005
gb|EU516085.1|  Influenza A virus (A/Hawaii/20/2007(H1N1)) seg...  44.1    0.005
gb|EU516084.1|  Influenza A virus (A/Hawaii/18/2007(H1N1)) seg...  44.1    0.005
gb|EU516083.1|  Influenza A virus (A/New Jersey/15/2007(H1N1))...  44.1    0.005
gb|EU516082.1|  Influenza A virus (A/Hawaii/35/2007(H1N1)) seg...  44.1    0.005
gb|EU516081.1|  Influenza A virus (A/Washington/28/2007(H1N1))...  44.1    0.005
gb|EU516080.1|  Influenza A virus (A/Hawaii/21/2007(H1N1)) seg...  44.1    0.005
gb|EU516079.1|  Influenza A virus (A/Hawaii/19/2007(H1N1)) seg...  44.1    0.005
gb|EU516078.1|  Influenza A virus (A/Hawaii/31/2007(H1N1)) seg...  44.1    0.005
gb|EU516060.1|  Influenza A virus (A/Hawaii/17/2007(H1N1)) seg...  44.1    0.005
gb|EU516059.1|  Influenza A virus (A/Hawaii/16/2007(H1N1)) seg...  44.1    0.005
gb|EU516058.1|  Influenza A virus (A/Idaho/11/2007(H1N1)) segm...  44.1    0.005
gb|EU516057.1|  Influenza A virus (A/Hawaii/15/2007(H1N1)) seg...  44.1    0.005
gb|EU516023.1|  Influenza A virus (A/Texas/32/2007(H1N1)) segm...  44.1    0.005
gb|EU516018.1|  Influenza A virus (A/Colorado/21/2007(H1N1)) s...  44.1    0.005
gb|EU516017.1|  Influenza A virus (A/Hawaii/31/2007(H1N1)) seg...  44.1    0.005
gb|CY030234.1|  Influenza A virus (A/IVR148(Brisbane/59/2007-I...  44.1    0.005
gb|CY030232.1|  Influenza A virus (A/Brisbane/59/2007(H1N1)) s...  44.1    0.005
gb|CY030230.1|  Influenza A virus (A/Brisbane/59/2007(H1N1)) s...  44.1    0.005
gb|CY030217.1|  Influenza A virus (A/Brisbane/270/2006(H1N1)) ...  44.1    0.005
gb|CY030216.1|  Influenza A virus (A/Singapore/103/2006(H1N1))...  44.1    0.005
gb|CY030215.1|  Influenza A virus (A/Singapore/36/2006(H1N1)) ...  44.1    0.005
gb|CY030213.1|  Influenza A virus (A/Singapore/69/2006(H1N1)) ...  44.1    0.005
gb|EU400263.1|  Influenza A virus (A/Milan/19/2007(H1N1)) hema...  44.1    0.005
gb|EU400251.1|  Influenza A virus (A/Milan/05/2007(H1N1)) hema...  44.1    0.005
gb|EU400246.1|  Influenza A virus (A/Milan/10/2007(H1N1)) hema...  44.1    0.005
gb|EU400240.1|  Influenza A virus (A/Milan/16/2007(H1N1)) hema...  44.1    0.005
gb|EU400239.1|  Influenza A virus (A/Milan/17/2007(H1N1)) hema...  44.1    0.005
gb|CY029832.1|  Influenza A virus (A/Austria/404817/2008(H1N1)...  44.1    0.005
gb|CY029831.1|  Influenza A virus (A/Austria/404805/2008(H1N1)...  44.1    0.005
gb|CY029828.1|  Influenza A virus (A/Austria/404596/2008(H1N1)...  44.1    0.005
gb|CY029827.1|  Influenza A virus (A/Austria/404579/2008(H1N1)...  44.1    0.005
gb|CY029826.1|  Influenza A virus (A/Austria/404577/2008(H1N1)...  44.1    0.005
gb|CY029825.1|  Influenza A virus (A/Austria/404345/2008(H1N1)...  44.1    0.005
gb|CY029824.1|  Influenza A virus (A/Austria/404342/2008(H1N1)...  44.1    0.005
gb|CY029823.1|  Influenza A virus (A/Austria/404340/2008(H1N1)...  44.1    0.005
gb|CY029822.1|  Influenza A virus (A/Austria/404339/2008(H1N1)...  44.1    0.005
gb|CY029821.1|  Influenza A virus (A/Austria/404337/2008(H1N1)...  44.1    0.005
gb|CY029820.1|  Influenza A virus (A/Austria/404287/2008(H1N1)...  44.1    0.005
gb|CY029819.1|  Influenza A virus (A/Austria/404285/2008(H1N1)...  44.1    0.005
gb|CY029818.1|  Influenza A virus (A/Austria/403918/2008(H1N1)...  44.1    0.005
gb|CY029817.1|  Influenza A virus (A/Austria/403914/2008(H1N1)...  44.1    0.005
gb|CY029816.1|  Influenza A virus (A/Austria/403912/2008(H1N1)...  44.1    0.005
gb|CY029815.1|  Influenza A virus (A/Austria/403908/2008(H1N1)...  44.1    0.005
gb|CY029814.1|  Influenza A virus (A/Austria/403625/2008(H1N1)...  44.1    0.005
gb|CY029813.1|  Influenza A virus (A/Austria/403621/2008(H1N1)...  44.1    0.005
gb|CY029812.1|  Influenza A virus (A/Austria/403620/2008(H1N1)...  44.1    0.005
gb|CY029811.1|  Influenza A virus (A/Austria/403617/2008(H1N1)...  44.1    0.005
gb|CY029809.1|  Influenza A virus (A/Austria/402944/2008(H1N1)...  44.1    0.005
gb|CY029808.1|  Influenza A virus (A/Austria/402943/2008(H1N1)...  44.1    0.005
gb|CY029807.1|  Influenza A virus (A/Austria/402941/2008(H1N1)...  44.1    0.005
gb|CY029805.1|  Influenza A virus (A/Austria/402937/2008(H1N1)...  44.1    0.005
gb|CY029804.1|  Influenza A virus (A/Austria/402931/2008(H1N1)...  44.1    0.005
gb|CY029803.1|  Influenza A virus (A/Austria/402748/2008(H1N1)...  44.1    0.005
gb|CY029802.1|  Influenza A virus (A/Austria/402647/2008(H1N1)...  44.1    0.005
gb|CY029801.1|  Influenza A virus (A/Austria/402646/2008(H1N1)...  44.1    0.005
gb|CY029800.1|  Influenza A virus (A/Austria/402642/2008(H1N1)...  44.1    0.005
gb|CY029799.1|  Influenza A virus (A/Austria/402641/2008(H1N1)...  44.1    0.005
gb|CY029798.1|  Influenza A virus (A/Austria/402393/2008(H1N1)...  44.1    0.005
gb|CY029797.1|  Influenza A virus (A/Austria/402138/2008(H1N1)...  44.1    0.005
gb|CY029796.1|  Influenza A virus (A/Austria/402133/2008(H1N1)...  44.1    0.005
gb|CY029795.1|  Influenza A virus (A/Austria/402129/2008(H1N1)...  44.1    0.005
gb|CY029794.1|  Influenza A virus (A/Austria/402127/2008(H1N1)...  44.1    0.005
gb|CY029793.1|  Influenza A virus (A/Austria/401927/2008(H1N1)...  44.1    0.005
gb|CY029792.1|  Influenza A virus (A/Austria/401824/2008(H1N1)...  44.1    0.005
gb|CY029791.1|  Influenza A virus (A/Austria/401520/2008(H1N1)...  44.1    0.005
gb|CY029790.1|  Influenza A virus (A/Austria/401513/2008(H1N1)...  44.1    0.005
gb|CY029789.1|  Influenza A virus (A/Austria/401355/2008(H1N1)...  44.1    0.005
gb|CY029788.1|  Influenza A virus (A/Austria/400864/2008(H1N1)...  44.1    0.005
gb|CY029787.1|  Influenza A virus (A/Austria/400861/2008(H1N1)...  44.1    0.005
gb|CY029786.1|  Influenza A virus (A/Austria/400611/2008(H1N1)...  44.1    0.005
gb|CY029785.1|  Influenza A virus (A/Austria/400115/2007(H1N1)...  44.1    0.005
gb|CY029784.1|  Influenza A virus (A/Austria/399864/2007(H1N1)...  44.1    0.005
gb|CY029783.1|  Influenza A virus (A/Austria/399282/2007(H1N1)...  44.1    0.005
gb|CY029782.1|  Influenza A virus (A/Austria/397829/2007(H1N1)...  44.1    0.005
gb|CY028315.1|  Influenza A virus (A/Texas/UR06-0217/2007(H1N1...  44.1    0.005
gb|EU304355.1|  Influenza A virus (A/Busan/03/2007(H1N1)) hema...  44.1    0.005
gb|EU304354.1|  Influenza A virus (A/Busan/02/2007(H1N1)) hema...  44.1    0.005
gb|CY027603.1|  Influenza A virus (A/New York/UR06-0326/2007(H...  44.1    0.005
gb|EU204969.1|  Influenza A virus (A/Kenya/AF5623/2007(H1N1)) ...  44.1    0.005
gb|CY026699.1|  Influenza A virus (A/Tennessee/UR06-0045/2007(...  44.1    0.005
gb|CY026627.1|  Influenza A virus (A/New York/UR06-0199/2007(H...  44.1    0.005
gb|CY026587.1|  Influenza A virus (A/Kentucky/UR06-0476/2007(H...  44.1    0.005
gb|CY026539.1|  Influenza A virus (A/California/UR06-0393/2007...  44.1    0.005
gb|CY026523.1|  Influenza A virus (A/Colorado/UR06-0053/2007(H...  44.1    0.005
gb|CY026371.1|  Influenza A virus (A/Mississippi/UR06-0378/200...  44.1    0.005
gb|EU199354.1|  Influenza A virus (A/California/05/2007(H1N1))...  44.1    0.005
gb|EU199348.1|  Influenza A virus (A/California/09/2006(H1N1))...  44.1    0.005
gb|EU199335.1|  Influenza A virus (A/Hawaii/01/2007(H1N1)) seg...  44.1    0.005
gb|EU199330.1|  Influenza A virus (A/Hawaii/11/2006(H1N1)) seg...  44.1    0.005
gb|EU199328.1|  Influenza A virus (A/Texas/05/2007(H1N1)) segm...  44.1    0.005
gb|EU199325.1|  Influenza A virus (A/Maryland/01/2007(H1N1)) s...  44.1    0.005
gb|EU199312.1|  Influenza A virus (A/Washington/16/2007(H1N1))...  44.1    0.005
gb|EU199307.1|  Influenza A virus (A/Colorado/04/2006(H1N1)) s...  44.1    0.005
gb|EU199289.1|  Influenza A virus (A/New Jersey/09/2007(H1N1))...  44.1    0.005
gb|EU124177.1|  Influenza A virus (A/Solomon Islands/3/2006(H1...  44.1    0.005
gb|EU124137.1|  Influenza A virus (A/Solomon Islands/3/2006 (E...  44.1    0.005
gb|EU124135.1|  Influenza A virus (A/Solomon Islands/3/2006(H1...  44.1    0.005
gb|EU124047.1|  Influenza A virus (A/Malaysia/760/2005(H1)) se...  44.1    0.005
gb|EU100727.1|  Influenza A virus (A/St. Petersburg/08/2006 X-...  44.1    0.005
gb|EU100726.1|  Influenza A virus (A/St. Petersburg/08/2006 X-...  44.1    0.005
gb|EU100725.1|  Influenza A virus (A/St. Petersburg/08/2006 X-...  44.1    0.005
gb|EU100724.1|  Influenza A virus (A/Solomon Islands/03/2006(H...  44.1    0.005
gb|EU100693.1|  Influenza A virus (A/Missouri/9/2006(H1N1)) se...  44.1    0.005
gb|EU100690.1|  Influenza A virus (A/Missouri/13/2006(H1N1)) s...  44.1    0.005
gb|EU100689.1|  Influenza A virus (A/Maryland/7/2006(H1N1)) se...  44.1    0.005
gb|EU100688.1|  Influenza A virus (A/Maryland/6/2006(H1N1)) se...  44.1    0.005
gb|EU100683.1|  Influenza A virus (A/Washington/7/2006(H1N1)) ...  44.1    0.005
gb|EU100676.1|  Influenza A virus (A/Indiana/6/2006(H1N1)) seg...  44.1    0.005
gb|EU100672.1|  Influenza A virus (A/California/3/2006(H1N1)) ...  44.1    0.005
gb|EU100598.1|  Influenza A virus (A/New York/20/2006(H1N1)) s...  44.1    0.005
gb|EU100595.1|  Influenza A virus (A/Washington/4/2006(H1N1)) ...  44.1    0.005
gb|EU100594.1|  Influenza A virus (A/Texas/14/2006(H1N1)) segm...  44.1    0.005
gb|EU021262.1|  Influenza A virus (A/Thailand/CU75/2006(H1N1))...  44.1    0.005
gb|EU021260.1|  Influenza A virus (A/Thailand/CU68/2006(H1N1))...  44.1    0.005
gb|EU021258.1|  Influenza A virus (A/Thailand/CU44/2006(H1N1))...  44.1    0.005
gb|EU021256.1|  Influenza A virus (A/Thailand/CU57/2006(H1N1))...  44.1    0.005
gb|EU021254.1|  Influenza A virus (A/Thailand/CU51/2006(H1N1))...  44.1    0.005
gb|EU021252.1|  Influenza A virus (A/Thailand/CU88/2006(H1N1))...  44.1    0.005
gb|EU021250.1|  Influenza A virus (A/Thailand/CU67/2006(H1N1))...  44.1    0.005
gb|EU021248.1|  Influenza A virus (A/Thailand/CU53/2006(H1N1))...  44.1    0.005
gb|EU021246.1|  Influenza A virus (A/Thailand/CU41/2006(H1N1))...  44.1    0.005
gb|EF620016.1|  Influenza A virus (A/Taiwan/603/2005(H1N1)) se...  44.1    0.005
gb|EF620013.1|  Influenza A virus (A/Taiwan/1571/2004(H1N1)) s...  44.1    0.005
dbj|AB286006.1|  Influenza A virus (A/Hanoi/BM344/2006(H1N1)) ...  44.1    0.005
gb|EF566375.1|  Influenza A virus (A/Singapore/23/2004(H1N1)) ...  44.1    0.005
gb|EF566371.1|  Influenza A virus (A/New Caledonia/9/2004(H1N1...  44.1    0.005
gb|EF566357.1|  Influenza A virus (A/Thailand/369/2006(H1)) se...  44.1    0.005
gb|EF566356.1|  Influenza A virus (A/Singapore/42/2006(H1)) se...  44.1    0.005
gb|EF566355.1|  Influenza A virus (A/Singapore/19/2006(H1)) se...  44.1    0.005
gb|EF566354.1|  Influenza A virus (A/Singapore/41/2006(H1N1)) ...  44.1    0.005
gb|EF566353.1|  Influenza A virus (A/Thailand/371/2006(H1)) se...  44.1    0.005
gb|EF566352.1|  Influenza A virus (A/Thailand/376/2006(H1)) se...  44.1    0.005
gb|EF566350.1|  Influenza A virus (A/Philippines/601/2006(H1))...  44.1    0.005
gb|EF566349.1|  Influenza A virus (A/Philippines/568/2006(H1))...  44.1    0.005
gb|EF566348.1|  Influenza A virus (A/Philippines/574/2006(H1))...  44.1    0.005
gb|EF566347.1|  Influenza A virus (A/Philippines/624/2006(H1N1...  44.1    0.005
gb|EF566346.1|  Influenza A virus (A/Philippines/1392/2006(H1N...  44.1    0.005
gb|EF566345.1|  Influenza A virus (A/Auckland/30/2006(H1N1)) s...  44.1    0.005
gb|EF566344.1|  Influenza A virus (A/Johannesburg/438/2006(H1N...  44.1    0.005
gb|EF566343.1|  Influenza A virus (A/Perth/07/2006(H1N1)) segm...  44.1    0.005
gb|EF566342.1|  Influenza A virus (A/Philippines/906/2006(H1N1...  44.1    0.005
gb|EF566341.1|  Influenza A virus (A/Philippines/673/2006(H1N1...  44.1    0.005
gb|EF566340.1|  Influenza A virus (A/Philippines/617/2006(H1))...  44.1    0.005
gb|EF566339.1|  Influenza A virus (A/Brisbane/2/2006(H1)) segm...  44.1    0.005
gb|EF566338.1|  Influenza A virus (A/Macau/14585/2006(H1N1)) s...  44.1    0.005
gb|EF566337.1|  Influenza A virus (A/Macau/13076/2006(H1N1)) s...  44.1    0.005
gb|EF566336.1|  Influenza A virus (A/Macau/12598/2006(H1)) seg...  44.1    0.005
gb|EF566331.1|  Influenza A virus (A/Macau/7334/2006(H1)) segm...  44.1    0.005
gb|EF566330.1|  Influenza A virus (A/Macau/10258/2006(H1N1)) s...  44.1    0.005
gb|EF566329.1|  Influenza A virus (A/Victoria/500/2006(H1N1)) ...  44.1    0.005
gb|EF566328.1|  Influenza A virus (A/Malaysia/100/2006(H1)) se...  44.1    0.005
gb|EF566327.1|  Influenza A virus (A/Malaysia/56/2006(H1N1)) s...  44.1    0.005
gb|EF566326.1|  Influenza A virus (A/Malaysia/38/2006(H1N1)) s...  44.1    0.005
gb|EF566325.1|  Influenza A virus (A/Malaysia/37/2006(H1N1)) s...  44.1    0.005
gb|EF566324.1|  Influenza A virus (A/Malaysia/36/2006(H1N1)) s...  44.1    0.005
gb|EF566323.1|  Influenza A virus (A/Taiwan/135/2006(H1)) segm...  44.1    0.005
gb|EF566319.1|  Influenza A virus (A/Singapore/107/2005(H1N1))...  44.1    0.005
gb|EF566179.1|  Influenza A virus (A/New Caledonia/9/2004(H1N1...  44.1    0.005
gb|EF566128.1|  Influenza A virus (A/New Caledonia/4/2004(H1))...  44.1    0.005
gb|EF566127.1|  Influenza A virus (A/New Caledonia/3/2004(H1))...  44.1    0.005
gb|EF566125.1|  Influenza A virus (A/Philippines/936/2004(H1N1...  44.1    0.005
gb|EF566124.1|  Influenza A virus (A/Philippines/987/2004(H1N1...  44.1    0.005
gb|EF566122.1|  Influenza A virus (A/Taiwan/1559/2004(H1N1)) s...  44.1    0.005
gb|EF566121.1|  Influenza A virus (A/Christchurch/106/2004(H1N...  44.1    0.005
gb|EF566120.1|  Influenza A virus (A/Bangkok/1940/2004(H1)) se...  44.1    0.005
gb|EF566119.1|  Influenza A virus (A/Ayatthaya/2111/2004(H1)) ...  44.1    0.005
gb|CY016394.1|  Influenza A virus (A/Colorado/1/2006(H1N1)) se...  44.1    0.005
gb|CY016386.1|  Influenza A virus (A/Missouri/3/2006(H1N1)) se...  44.1    0.005
gb|CY016373.1|  Influenza A virus (A/Virginia/1e/2006(H1N1)) s...  44.1    0.005
gb|CY016372.1|  Influenza A virus (A/Virginia/1/2006(H1N1)) se...  44.1    0.005
gb|CY016369.1|  Influenza A virus (A/Arizona/1/2006(H1N1)) seg...  44.1    0.005
gb|CY016367.1|  Influenza A virus (A/New Hampshire/1/2005(H1N1...  44.1    0.005
gb|CY016365.1|  Influenza A virus (A/California/27/2005(H1N1))...  44.1    0.005
gb|CY016363.1|  Influenza A virus (A/Colorado/20/2005(H1N1)) s...  44.1    0.005
dbj|AB255398.1|  Influenza A virus (A/Aichi/150/2006(H1N1)) ge...  44.1    0.005
dbj|AB255395.1|  Influenza A virus (A/Aichi/103/2006(H1N1)) ge...  44.1    0.005
dbj|AB255392.1|  Influenza A virus (A/Aichi/21/2006(H1N1)) gen...  44.1    0.005
gb|CY007467.1|  Influenza A virus (A/Canterbury/106/2004(H1N1)...  44.1    0.005

HenryN · #7 October 1st, 2008, 09:25 AM

gb|FJ227684.1| Influenza A virus (A/HongKong/942/2008(H1N1)) ... 38.2 0.16
gb|CY034527.1| Influenza A virus (A/Japan/AF1884/2008(H1N1)) ... 38.2 0.16
gb|EU779612.1| Influenza A virus (A/Hawaii/46/2007(H1N1)) hem... 38.2 0.16
gb|CY031508.1| Influenza A virus (A/Texas/AF1323/2008(H1N1)) ... 38.2 0.16
gb|CY031503.1| Influenza A virus (A/Texas/AF1318/2008(H1N1)) ... 38.2 0.16
gb|CY031502.1| Influenza A virus (A/Texas/AF1317/2008(H1N1)) ... 38.2 0.16
gb|CY031501.1| Influenza A virus (A/Texas/AF1316/2008(H1N1)) ... 38.2 0.16
gb|CY031469.1| Influenza A virus (A/Japan/AF1274/2008(H1N1)) ... 38.2 0.16

HenryN · #8 October 1st, 2008, 09:29 AM

gb|FJ227684.1| Influenza A virus (A/HongKong/942/2008(H1N1)) ... 40.1 0.041
gb|CY034527.1| Influenza A virus (A/Japan/AF1884/2008(H1N1)) ... 40.1 0.041
gb|CY031508.1| Influenza A virus (A/Texas/AF1323/2008(H1N1)) ... 40.1 0.041
gb|CY031503.1| Influenza A virus (A/Texas/AF1318/2008(H1N1)) ... 40.1 0.041
gb|CY031502.1| Influenza A virus (A/Texas/AF1317/2008(H1N1)) ... 40.1 0.041
gb|CY031501.1| Influenza A virus (A/Texas/AF1316/2008(H1N1)) ... 40.1 0.041
gb|CY031469.1| Influenza A virus (A/Japan/AF1274/2008(H1N1)) ... 40.1 0.041

HenryN · #9 October 1st, 2008, 09:51 AM

Quote:

Originally Posted by niman

gb|FJ227684.1| Influenza A virus (A/HongKong/942/2008(H1N1)) ... 40.1 0.041
gb|CY034527.1| Influenza A virus (A/Japan/AF1884/2008(H1N1)) ... 40.1 0.041
gb|CY031508.1| Influenza A virus (A/Texas/AF1323/2008(H1N1)) ... 40.1 0.041
gb|CY031503.1| Influenza A virus (A/Texas/AF1318/2008(H1N1)) ... 40.1 0.041
gb|CY031502.1| Influenza A virus (A/Texas/AF1317/2008(H1N1)) ... 40.1 0.041
gb|CY031501.1| Influenza A virus (A/Texas/AF1316/2008(H1N1)) ... 40.1 0.041
gb|CY031469.1| Influenza A virus (A/Japan/AF1274/2008(H1N1)) ... 40.1 0.041

The HA sequence from Hong Kong is closely related to the above sequences suggesting that the above isolates (for which only HA sequences have been released), may also have H274Y in the unpublished NA sequences.

HenryN · #10 October 1st, 2008, 10:57 AM

HA sequences below are exact matches

gb|FJ227686.1| Influenza A virus (A/HongKong/1313/2008(H1N1))... 1018 0.0
gb|CY034581.1| Influenza A virus (A/Korea/AF1951/2008(H1N1)) ... 1018 0.0
gb|CY034549.1| Influenza A virus (A/Hawaii/AF1910/2008(H1N1))... 1018 0.0
gb|CY034540.1| Influenza A virus (A/Korea/AF1898/2008(H1N1)) ... 1018 0.0
gb|CY034521.1| Influenza A virus (A/Georgia/AF1942/2007(H1N1)... 1018 0.0
gb|CY034520.1| Influenza A virus (A/Georgia/AF1941/2007(H1N1)... 1018 0.0
gb|CY034519.1| Influenza A virus (A/Georgia/AF1940/2007(H1N1)... 1018 0.0
gb|CY034518.1| Influenza A virus (A/Georgia/AF1939/2007(H1N1)... 1018 0.0
gb|CY034517.1| Influenza A virus (A/Georgia/AF1938/2007(H1N1)... 1018 0.0
gb|CY034516.1| Influenza A virus (A/Georgia/AF1937/2007(H1N1)... 1018 0.0
gb|CY034514.1| Influenza A virus (A/Georgia/AF1933/2007(H1N1)... 1018 0.0
gb|CY034513.1| Influenza A virus (A/Georgia/AF1932/2007(H1N1)... 1018 0.0
gb|CY034511.1| Influenza A virus (A/Georgia/AF1902/2007(H1N1)... 1018 0.0
gb|CY034510.1| Influenza A virus (A/Georgia/AF1897/2007(H1N1)... 1018 0.0
gb|CY031498.1| Influenza A virus (A/Texas/AF1313/2008(H1N1)) ... 1018 0.0
gb|CY031450.1| Influenza A virus (A/Korea/AF1311/2007(H1N1)) ... 1018 0.0
gb|CY031449.1| Influenza A virus (A/Korea/AF1310/2007(H1N1)) ... 1018 0.0
gb|CY031448.1| Influenza A virus (A/Korea/AF1309/2007(H1N1)) ... 1018 0.0
gb|CY031426.1| Influenza A virus (A/Hawaii/AF1255/2007(H1N1))... 1018 0.0
gb|CY031417.1| Influenza A virus (A/Northern Mariana Islands/... 1018 0.0
gb|CY031409.1| Influenza A virus (A/Georgia/AF1236/2007(H1N1)... 1018 0.0
gb|CY031408.1| Influenza A virus (A/Georgia/AF1235/2007(H1N1)... 1018 0.0
gb|CY031407.1| Influenza A virus (A/Georgia/AF1234/2007(H1N1)... 1018 0.0
gb|CY031406.1| Influenza A virus (A/Georgia/AF1233/2007(H1N1)... 1018 0.0
gb|CY031405.1| Influenza A virus (A/Georgia/AF1232/2007(H1N1)... 1018 0.0
gb|CY031404.1| Influenza A virus (A/Georgia/AF1231/2007(H1N1)... 1018 0.0
gb|CY031403.1| Influenza A virus (A/Georgia/AF1230/2007(H1N1)... 1018 0.0
gb|CY031402.1| Influenza A virus (A/Georgia/AF1229/2007(H1N1)... 1018 0.0
gb|CY031401.1| Influenza A virus (A/Georgia/AF1228/2007(H1N1)... 1018 0.0
gb|CY031400.1| Influenza A virus (A/Georgia/AF1227/2007(H1N1)... 1018 0.0
gb|CY031399.1| Influenza A virus (A/Georgia/AF1226/2007(H1N1)... 1018 0.0
gb|CY031398.1| Influenza A virus (A/Georgia/AF1225/2007(H1N1)... 1018 0.0
gb|CY031397.1| Influenza A virus (A/Georgia/AF1224/2007(H1N1)... 1018 0.0
gb|CY031396.1| Influenza A virus (A/Georgia/AF1223/2007(H1N1)... 1018 0.0

HenryN · #11 October 1st, 2008, 11:57 AM

The second HA sequence has two differences, and is closely related to one of the other Hong Kong sequences:

gb|FJ227685.1| Influenza A virus (A/HongKong/1052/2008(H1N1))... 1018 0.0
gb|FJ227686.1| Influenza A virus (A/HongKong/1313/2008(H1N1))... 1009 0.0
gb|CY034581.1| Influenza A virus (A/Korea/AF1951/2008(H1N1)) ... 1009 0.0
gb|CY034549.1| Influenza A virus (A/Hawaii/AF1910/2008(H1N1))... 1009 0.0
gb|CY034540.1| Influenza A virus (A/Korea/AF1898/2008(H1N1)) ... 1009 0.0
gb|CY034521.1| Influenza A virus (A/Georgia/AF1942/2007(H1N1)... 1009 0.0
gb|CY034520.1| Influenza A virus (A/Georgia/AF1941/2007(H1N1)... 1009 0.0
gb|CY034519.1| Influenza A virus (A/Georgia/AF1940/2007(H1N1)... 1009 0.0
gb|CY034518.1| Influenza A virus (A/Georgia/AF1939/2007(H1N1)... 1009 0.0
gb|CY034517.1| Influenza A virus (A/Georgia/AF1938/2007(H1N1)... 1009 0.0
gb|CY034516.1| Influenza A virus (A/Georgia/AF1937/2007(H1N1)... 1009 0.0
gb|CY034514.1| Influenza A virus (A/Georgia/AF1933/2007(H1N1)... 1009 0.0
gb|CY034513.1| Influenza A virus (A/Georgia/AF1932/2007(H1N1)... 1009 0.0
gb|CY034511.1| Influenza A virus (A/Georgia/AF1902/2007(H1N1)... 1009 0.0
gb|CY034510.1| Influenza A virus (A/Georgia/AF1897/2007(H1N1)... 1009 0.0
gb|CY031498.1| Influenza A virus (A/Texas/AF1313/2008(H1N1)) ... 1009 0.0
gb|CY031450.1| Influenza A virus (A/Korea/AF1311/2007(H1N1)) ... 1009 0.0
gb|CY031449.1| Influenza A virus (A/Korea/AF1310/2007(H1N1)) ... 1009 0.0
gb|CY031448.1| Influenza A virus (A/Korea/AF1309/2007(H1N1)) ... 1009 0.0
gb|CY031426.1| Influenza A virus (A/Hawaii/AF1255/2007(H1N1))... 1009 0.0
gb|CY031417.1| Influenza A virus (A/Northern Mariana Islands/... 1009 0.0
gb|CY031409.1| Influenza A virus (A/Georgia/AF1236/2007(H1N1)... 1009 0.0
gb|CY031408.1| Influenza A virus (A/Georgia/AF1235/2007(H1N1)... 1009 0.0
gb|CY031407.1| Influenza A virus (A/Georgia/AF1234/2007(H1N1)... 1009 0.0
gb|CY031406.1| Influenza A virus (A/Georgia/AF1233/2007(H1N1)... 1009 0.0
gb|CY031405.1| Influenza A virus (A/Georgia/AF1232/2007(H1N1)... 1009 0.0
gb|CY031404.1| Influenza A virus (A/Georgia/AF1231/2007(H1N1)... 1009 0.0
gb|CY031403.1| Influenza A virus (A/Georgia/AF1230/2007(H1N1)... 1009 0.0
gb|CY031402.1| Influenza A virus (A/Georgia/AF1229/2007(H1N1)... 1009 0.0
gb|CY031401.1| Influenza A virus (A/Georgia/AF1228/2007(H1N1)... 1009 0.0
gb|CY031400.1| Influenza A virus (A/Georgia/AF1227/2007(H1N1)... 1009 0.0
gb|CY031399.1| Influenza A virus (A/Georgia/AF1226/2007(H1N1)... 1009 0.0
gb|CY031398.1| Influenza A virus (A/Georgia/AF1225/2007(H1N1)... 1009 0.0
gb|CY031397.1| Influenza A virus (A/Georgia/AF1224/2007(H1N1)... 1009 0.0
gb|CY031396.1| Influenza A virus (A/Georgia/AF1223/2007(H1N1)... 1009 0.0

HenryN · #12 October 1st, 2008, 12:04 PM

This HA has one of the sequences found in South Africa

gb|FJ227685.1| Influenza A virus (A/HongKong/1052/2008(H1N1))... 42.1 0.016
gb|EU914916.1| Influenza A virus (A/Johannesburg/46/2008(H1N1... 42.1 0.016
gb|EU914915.1| Influenza A virus (A/Johannesburg/35/2008(H1N1... 42.1 0.016
gb|EU914914.1| Influenza A virus (A/Johannesburg/34/2008(H1N1... 42.1 0.016
gb|EU914911.1| Influenza A virus (A/Johannesburg/25/2008(H1N1... 42.1 0.016
gb|EU914909.1| Influenza A virus (A/Johannesburg/10/2008(H1N1... 42.1 0.016

HenryN · #13 October 1st, 2008, 12:14 PM

Quote:

Originally Posted by niman

This HA has one of the sequences found in South Africa

gb|FJ227685.1| Influenza A virus (A/HongKong/1052/2008(H1N1))... 42.1 0.016
gb|EU914916.1| Influenza A virus (A/Johannesburg/46/2008(H1N1... 42.1 0.016
gb|EU914915.1| Influenza A virus (A/Johannesburg/35/2008(H1N1... 42.1 0.016
gb|EU914914.1| Influenza A virus (A/Johannesburg/34/2008(H1N1... 42.1 0.016
gb|EU914911.1| Influenza A virus (A/Johannesburg/25/2008(H1N1... 42.1 0.016
gb|EU914909.1| Influenza A virus (A/Johannesburg/10/2008(H1N1... 42.1 0.016

This change encodes N187S (although the sequence does not have G189N and sequences further downstream have not been released).

HenryN · #14 October 1st, 2008, 03:58 PM

Exact matches in NA

gb|FJ227687.1| Influenza A virus (A/HongKong/942/2008(H1N1)) ... 1038 0.0
gb|EU914903.1| Influenza A virus (A/Johannesburg/21/2008(H1N1... 1038 0.0
gb|EU914902.1| Influenza A virus (A/CapeTown/26/2008(H1N1)) n... 1038 0.0
gb|EU685788.1| Influenza A virus (A/Paris/1170/2008(H1N1)) ne... 1038 0.0
gb|EU551826.1| Influenza A virus (A/Paris/749/2007(H1N1)) neu... 1038 0.0
gb|EU551824.1| Influenza A virus (A/Paris/847/2007(H1N1)) neu... 1038 0.0
gb|EU551813.1| Influenza A virus (A/Paris/1208/2008(H1N1)) ne... 1038 0.0
gb|EU551812.1| Influenza A virus (A/Paris/1154/2008(H1N1)) ne... 1038 0.0
gb|EU551811.1| Influenza A virus (A/Paris/341/2007(H1N1)) neu... 1038 0.0
gb|EU551810.1| Influenza A virus (A/Paris/910/2007(H1N1)) neu... 1038 0.0
gb|EU551809.1| Influenza A virus (A/Paris/644/2007(H1N1)) neu... 1038 0.0
gb|EU887035.1| Influenza A virus (A/South Carolina/01/2008(H1... 1038 0.0
gb|EU851980.1| Influenza A virus (A/Hawaii/01/2008(H1N1)) seg... 1038 0.0
gb|EU779643.1| Influenza A virus (A/New Jersey/10/2008(H1N1))... 1038 0.0
gb|EU702755.1| Influenza A virus (A/Hong Kong/17/2008(H1N1)) ... 1038 0.0
gb|EU716587.1| Influenza A virus (A/Washington/01/2008(H1N1))... 1038 0.0
gb|EU624316.1| Influenza A virus (A/England/557/2007(H1N1)) s... 1038 0.0
gb|EU566999.1| Influenza A virus (A/Wisconsin/01/2008(H1N1)) ... 1038 0.0
gb|EU566987.1| Influenza A virus (A/New Jersey/20/2007(H1N1))... 1038 0.0
gb|EU566983.1| Influenza A virus (A/New Jersey/05/2008(H1N1))... 1038 0.0
gb|EU516148.1| Influenza A virus (A/New Jersey/15/2007(H1N1))... 1038 0.0

HenryN · #15 October 2nd, 2008, 07:20 AM

Commentary

http://www.recombinomics.com/News/10...74Y_2BX2C.html

HenryN · #16 October 2nd, 2008, 05:52 PM

Commentary

http://www.recombinomics.com/News/10...x_Evasion.html

AlaskaDenise · #17 October 3rd, 2008, 02:35 AM

Quote:

Originally Posted by niman

Commentary

http://www.recombinomics.com/News/10...x_Evasion.html

Commentary

H1N1 Tamiflu Resistance Vax Evasion
Recombinomics Commentary 22:36
October 2, 2008

Recently released HA and NA sequences and phylograms define the recent emergence and evolution of oseltamivir (Tamiflu) resistance in H1N1. The presence of H274Y in influenza from hosts in the absence of oseltamivir began with H5N1 in wild birds in 2005, followed by various H1N1 sub-clades in patients. Initial isolates were clade 2C (Hong Kong/2562) in the 2005/2006 season in China, followed by clade 1 (New Caledonia/20) in 2006/2007 in the United States, followed by clade 2B (Brisbane/59) in the United States, which then led to a dominant clade 2B sub-clade which accounted for most cases in the United States and Europe (supported by recently released sequences from France and Luxembourg). Recent data demonstrates the spread of this sub-clade into the Southern Hemisphere and the frequency of H274Y in H1N1 is now approaching 100% in many countries.

However, recent sequence data out of South Africa and Hong Kong raises concerns of rapid evolution which will evade the new H1N1 vaccine being introduced into the northern hemisphere, which is directed against Brisbane/59 (clade 2B). The vax evasion is taking multiple forms. Last season clade 2A (Solomon Island/3) was targeted, but clade 2A was no longer in circulation. It had been replaced by clade 2B and 2C.

Although initial testing demonstrated significant cross reactivity between the three clade 2 sub-clades, the activity was linked to growth of targets in chicken eggs. When Brisbane/59 was grown in mammalian cells, there were significant antigenic differences between the three sub-clades, consistent with phylogenetic analysis.

Although the new H1N1 vaccine now targets clade 2B, the recent sequences from South Africa had a cluster of changes surrounding the receptor binding domain at position 190 (H3 numbering). These changes are being facilitated by recombination. The two changes on the 3’ side of the cluster are found in H1N1 isolates from the 1940’s, while the change at the 5’ end of the cluster is rare, but now has appeared in recent clade 2B isolates in South Africa and the Seychelles, but has also been found in clade 2C in Hong Kong.

In addition to rapid change in clade 2B, the three recently released clade 2C sequences from Hong Kong also have H274Y. In two of the isolates, the H274Y is on a 2C NA, while the other is on the NA background that matches the dominant clade 2B sequence.

Thus the vax evasion is linked to rapid changes in clade 2B and well as movement of clade 2B sequences to clade 2C, which is not targeted by the new vaccine. Thus the presence of H274Y on all three recent clade 2C sequences from Hong Kong raises concerns that the fixing of H274Y into clade 2B, may also be spreading to clade 2C, which is not targeted by the current vaccine in the northern hemisphere, or the one being produced for the southern hemisphere in 2009. Thus, the vaccine continues to chase H1N1 evolution in clade 2B and 2C, where the level of H274Y continues to rise.

.

HenryN · #18 January 5th, 2009, 08:04 AM

1: FJ581448	Reports	Links
Influenza A virus (A/Hong Kong/1313/2008(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, partial cds gi\|218931771\|gb\|FJ581448.1\|[218931771]

2: FJ581447 Reports Links Influenza A virus (A/Hong Kong/1052/2008(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, partial cds gi|218931768|gb|FJ581447.1|[218931768]

3: FJ581446 Reports Links Influenza A virus (A/Hong Kong/942/2008(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, partial cds gi|218931765|gb|FJ581446.1|[218931765]

HenryN · #19 January 5th, 2009, 08:04 AM

All three M2 sequences have S31N.

HenryN · #20 January 5th, 2009, 08:20 AM

Only 200 BP for each isolate was released, but all three appear to be clade 2C.

HenryN · #21 January 5th, 2009, 08:24 AM

MP sequences are identical to each other as well as clade 2C isolates, including prototyoe Hong Kong/2562

gb|FJ581448.1| Influenza A virus (A/Hong Kong/1313/2008(H1N1)... 370 1e-99
gb|FJ581447.1| Influenza A virus (A/Hong Kong/1052/2008(H1N1)... 370 1e-99
gb|FJ581446.1| Influenza A virus (A/Hong Kong/942/2008(H1N1))... 370 1e-99
gb|EU716624.1| Influenza A virus (A/Massachusetts/01/2008(H1N... 370 1e-99
gb|EU716611.1| Influenza A virus (A/Minnesota/25/2007(H1N1)) ... 370 1e-99
gb|EU716609.1| Influenza A virus (A/Oregon/07/2007(H1N1)) seg... 370 1e-99
gb|CY031389.1| Influenza A virus (A/Auckland/8/2007(H1N1)) se... 370 1e-99
gb|CY031381.1| Influenza A virus (A/Thailand/486/2007(H1N1)) ... 370 1e-99
gb|CY031377.1| Influenza A virus (A/Philippines/3150/2007(H1N... 370 1e-99
gb|CY031371.1| Influenza A virus (A/Guam/1/2007(H1N1)) segmen... 370 1e-99
gb|CY031369.1| Influenza A virus (A/Malaysia/862/2007(H1N1)) ... 370 1e-99
gb|CY031361.1| Influenza A virus (A/Singapore/43/2007(H1N1)) ... 370 1e-99
gb|CY031355.1| Influenza A virus (A/Malaysia/330/2007(H1N1)) ... 370 1e-99
gb|CY031353.1| Influenza A virus (A/Jeju/2279/2007(H1N1)) seg... 370 1e-99
gb|CY031349.1| Influenza A virus (A/Victoria/501/2007(H1N1)) ... 370 1e-99
gb|CY031343.1| Influenza A virus (A/Hong Kong/2652/2006(H1N1)... 370 1e-99
gb|EU516158.1| Influenza A virus (A/Hawaii/19/2007(H1N1)) seg... 370 1e-99
gb|EU516156.1| Influenza A virus (A/Hawaii/16/2007(H1N1)) seg... 370 1e-99
gb|CY026524.1| Influenza A virus (A/Colorado/UR06-0053/2007(H... 370 1e-99
gb|EU100612.1| Influenza A virus (A/Arizona/1/2006(H1N1)) seg... 370 1e-99

HenryN · #22 January 5th, 2009, 11:07 AM

Commentary

http://www.recombinomics.com/News/01...Y_S31N_HK.html

AlaskaDenise · #23 January 6th, 2009, 03:01 AM

Quote:

Originally Posted by niman

Commentary

http://www.recombinomics.com/News/01...Y_S31N_HK.html

Commentary Hong Kong H1N1 With Tamflu and Adamantane Resistance Recombinomics Commentary 15:55 January 5, 2009 Partial MP sequences from H1N1 isolates in Hong Kong were released today at Genbank (A/Hong Kong/942/2008, A/Hong Kong/1052/2008, A/Hong Kong/1313/2008) . The MP sequences confirm that these isolates are resistant to Tamiflu (oseltamivir) and well as the adamantanes (S31N in M2). This result was not unexpected, because the NA sequences released earlier had H274Y and the HA sequences were clade 2C. The HA sequences were closely related to the clade 2C prototype sequence, Hong Kong/2652, and this sub-clade has S31N. However, since one of the NA sequences was clade 2B, and S31N has not been reported in clade 2B, it was possible than one or more MP gene segments were also from clade 2B and would be adamantine sensitive. However, all three partial (200 BP) were identical to each other, as well as public 2C sequences, including Hong Kong/2652. S31N has become fixed in clade 2C, and all clade 2C isolates last season and this season in the United States had S31N. Similarly, all clade 2B isolates in the United States this season have H274Y, so the co-circulation of clade 2B and clade 2C in Hong Kong could lead to recombination between the two sub-clades, leading to resistance to both classes of anti-virals (neuramindase inhibitors and ion channel blockers). The sequences released from Hong Kong has confirmed that this has happened in H1N1 isolates collected between March and June of 2008. .