LOCUS FJ842481 1713 bp cRNA linear VRL 27-MAR-2009
DEFINITION Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION FJ842481
VERSION FJ842481.1 GI:225697337
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1713)
AUTHORS Nguyen,T., Davis,T., Stembridge,W., Shu,B., Balish,A., Inui,K.,
Do,H., Ngo,H., Wan,X.-F., McCarron,M., Lindstrom,S., Cox,N.,
Nguyen,C., Klimov,A. and Donis,R.
TITLE Characterization of a highly pathogenic avian influenza H5N1 virus
sublineage in poultry seized at ports of entry into Vietnam
JOURNAL Virology (2009) In press
REFERENCE 2 (bases 1 to 1713)
AUTHORS Nguyen,T., Davis,T., Stembridge,W., Shu,B., Balish,A., Inui,K.,
Do,H., Ngo,H., Wan,X.-F., McCarron,M., Lindstrom,S., Cox,N.,
Nguyen,C., Klimov,A. and Donis,R.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2009) Influenza Division, CDC, 1600 Clifton Rd.,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..1713
/organism="Influenza A virus
(A/chicken/Vietnam/NCVD-03/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Vietnam/NCVD-03/2008"
/serotype="H5N1"
/isolation_source="cloacal swab"
/host="chicken"
/db_xref="taxon:629212"
/segment="4"
/country="Viet Nam"
/collection_date="2008"
gene 1..1713
/gene="HA"
CDS 1..1713
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACO07038.1"
/db_xref="GI:225697338"
/translation="MEKIVLLLAIISLVKSDQICIGYHANNSTEQVDTIME KNVTVTH
AQDILEKTHNGKLCNLDGVKPLILKDCSVAGWLLGNPMCDEFLNVSEWSY IVEKASPA
NGLCYPGDFNDYEELKHLLNRITHLKKIKIIPKSYWSNHEASSGVSAACS YMGEPSFF
RNVVWLIKKNNTYPPIKVNYTNTNQEDLLVLWGIHHPNNEAEQIQIYQNL ITHISVGT
STLNQRLIPKIATRSKVNGQSGRMEFFWTILKPNDSINFDSNGNFIAPEY AYIVKKGD
SAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRL VLATGLRN
APQREREGGRRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAA DKESTQKA
IDGITNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTY NAELLVLM
ENERTLDFHDSNVKNLYEKVRLQLRDNAKELGNGCFEFYHKCDNECMESV RNGTYDYS
QYSEEARLSREEINGVKLESMVTYQILSIYSTVASSLALAIMVAGLSLWM CSNGSLQC
RICI"
ORIGIN
1 atggagaaaa tagtgcttct tcttgcaata atcagccttg ttaaaagtga tcagatttgc
61 attggttacc atgcaaacaa ctcgacagag caggttgaca caataatgga aaagaacgtt
121 actgttacac atgctcaaga catactggag aagacacaca acgggaagct ctgcaaccta
181 gatggagtga agcctctaat tctaaaagac tgtagtgtag ctggatggct cctcgggaac
241 ccaatgtgtg acgaatttct caatgtgtca gaatggtctt acatagtgga gaaggccagt
301 ccagccaatg gcctctgtta cccaggggat ttcaatgact atgaagaact gaaacaccta
361 ttaaacagaa taacacatct taagaaaatt aagatcatcc ccaaaagtta ttggtccaat
421 catgaagcct catcaggggt gagcgcagca tgttcctata tgggggagcc ctcctttttc
481 agaaatgtgg tatggcttat caaaaagaat aatacatacc caccaataaa ggtgaactac
541 accaatacca atcaagaaga tcttttggta ctgtggggga ttcaccatcc caataatgag
601 gcagagcaga tacagatcta tcaaaaccta atcacccata tttcagttgg aacatcaaca
661 ctaaaccaga gattgatacc aaaaatagct actagatcca aagtgaacgg gcaaagtgga
721 agaatggagt tcttctggac aattttaaag ccgaatgatt ctatcaattt cgatagcaat
781 ggaaatttca ttgctccaga atatgcctac attgtcaaga aaggggactc ggcaattatg
841 aaaagtgaat tggagtatgg taactgcaac accaagtgtc aaactccaat gggggcgata
901 aattctagta tgccattcca caacatacac cctctcacca tcggggaatg ccccaaatat
961 gtgaagtcaa acagattagt cctcgcgact ggactcagaa atgcccctca aagagaaaga
1021 gaggggggaa gaagaagaaa aagaggacta tttggagcca tagcagggtt tatagaggga
1081 ggatggcagg gaatggtaga tggttggtat gggtaccacc atagcaatga gcaggggagt
1141 gggtacgctg cagacaaaga atccactcaa aaggcaatag atggaatcac taataaggtc
1201 aactcgatca ttgacaaaat gaacactcaa tttgaggccg ttggaaggga atttaataac
1261 ttagagagga gaatagaaaa tttaaacaaa aagatggagg acggattcct agatgtctgg
1321 acttataacg ctgaacttct ggttctcatg gaaaatgaga gaactctaga ctttcatgac
1381 tcaaatgtca agaaccttta cgaaaaggtc cgactacagc ttagggataa tgcaaaggag
1441 ctgggtaacg gttgtttcga gttctaccac aaatgtgata atgaatgtat ggaaagtgta
1501 agaaacggaa cgtatgacta ctcgcagtat tcagaagaag caagactaag cagagaggaa
1561 ataaatggag taaaattgga atcaatggta acttaccaaa tactgtcaat ttattcaaca
1621 gtggcgagtt ccctagcatt ggcaatcatg gtggctggtc tatctttatg gatgtgctcc
1681 aatggatcgt tacaatgcag aatttgcatt tga
DEFINITION Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION FJ842481
VERSION FJ842481.1 GI:225697337
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Vietnam/NCVD-03/2008(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1713)
AUTHORS Nguyen,T., Davis,T., Stembridge,W., Shu,B., Balish,A., Inui,K.,
Do,H., Ngo,H., Wan,X.-F., McCarron,M., Lindstrom,S., Cox,N.,
Nguyen,C., Klimov,A. and Donis,R.
TITLE Characterization of a highly pathogenic avian influenza H5N1 virus
sublineage in poultry seized at ports of entry into Vietnam
JOURNAL Virology (2009) In press
REFERENCE 2 (bases 1 to 1713)
AUTHORS Nguyen,T., Davis,T., Stembridge,W., Shu,B., Balish,A., Inui,K.,
Do,H., Ngo,H., Wan,X.-F., McCarron,M., Lindstrom,S., Cox,N.,
Nguyen,C., Klimov,A. and Donis,R.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2009) Influenza Division, CDC, 1600 Clifton Rd.,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..1713
/organism="Influenza A virus
(A/chicken/Vietnam/NCVD-03/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Vietnam/NCVD-03/2008"
/serotype="H5N1"
/isolation_source="cloacal swab"
/host="chicken"
/db_xref="taxon:629212"
/segment="4"
/country="Viet Nam"
/collection_date="2008"
gene 1..1713
/gene="HA"
CDS 1..1713
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACO07038.1"
/db_xref="GI:225697338"
/translation="MEKIVLLLAIISLVKSDQICIGYHANNSTEQVDTIME KNVTVTH
AQDILEKTHNGKLCNLDGVKPLILKDCSVAGWLLGNPMCDEFLNVSEWSY IVEKASPA
NGLCYPGDFNDYEELKHLLNRITHLKKIKIIPKSYWSNHEASSGVSAACS YMGEPSFF
RNVVWLIKKNNTYPPIKVNYTNTNQEDLLVLWGIHHPNNEAEQIQIYQNL ITHISVGT
STLNQRLIPKIATRSKVNGQSGRMEFFWTILKPNDSINFDSNGNFIAPEY AYIVKKGD
SAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRL VLATGLRN
APQREREGGRRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAA DKESTQKA
IDGITNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTY NAELLVLM
ENERTLDFHDSNVKNLYEKVRLQLRDNAKELGNGCFEFYHKCDNECMESV RNGTYDYS
QYSEEARLSREEINGVKLESMVTYQILSIYSTVASSLALAIMVAGLSLWM CSNGSLQC
RICI"
ORIGIN
1 atggagaaaa tagtgcttct tcttgcaata atcagccttg ttaaaagtga tcagatttgc
61 attggttacc atgcaaacaa ctcgacagag caggttgaca caataatgga aaagaacgtt
121 actgttacac atgctcaaga catactggag aagacacaca acgggaagct ctgcaaccta
181 gatggagtga agcctctaat tctaaaagac tgtagtgtag ctggatggct cctcgggaac
241 ccaatgtgtg acgaatttct caatgtgtca gaatggtctt acatagtgga gaaggccagt
301 ccagccaatg gcctctgtta cccaggggat ttcaatgact atgaagaact gaaacaccta
361 ttaaacagaa taacacatct taagaaaatt aagatcatcc ccaaaagtta ttggtccaat
421 catgaagcct catcaggggt gagcgcagca tgttcctata tgggggagcc ctcctttttc
481 agaaatgtgg tatggcttat caaaaagaat aatacatacc caccaataaa ggtgaactac
541 accaatacca atcaagaaga tcttttggta ctgtggggga ttcaccatcc caataatgag
601 gcagagcaga tacagatcta tcaaaaccta atcacccata tttcagttgg aacatcaaca
661 ctaaaccaga gattgatacc aaaaatagct actagatcca aagtgaacgg gcaaagtgga
721 agaatggagt tcttctggac aattttaaag ccgaatgatt ctatcaattt cgatagcaat
781 ggaaatttca ttgctccaga atatgcctac attgtcaaga aaggggactc ggcaattatg
841 aaaagtgaat tggagtatgg taactgcaac accaagtgtc aaactccaat gggggcgata
901 aattctagta tgccattcca caacatacac cctctcacca tcggggaatg ccccaaatat
961 gtgaagtcaa acagattagt cctcgcgact ggactcagaa atgcccctca aagagaaaga
1021 gaggggggaa gaagaagaaa aagaggacta tttggagcca tagcagggtt tatagaggga
1081 ggatggcagg gaatggtaga tggttggtat gggtaccacc atagcaatga gcaggggagt
1141 gggtacgctg cagacaaaga atccactcaa aaggcaatag atggaatcac taataaggtc
1201 aactcgatca ttgacaaaat gaacactcaa tttgaggccg ttggaaggga atttaataac
1261 ttagagagga gaatagaaaa tttaaacaaa aagatggagg acggattcct agatgtctgg
1321 acttataacg ctgaacttct ggttctcatg gaaaatgaga gaactctaga ctttcatgac
1381 tcaaatgtca agaaccttta cgaaaaggtc cgactacagc ttagggataa tgcaaaggag
1441 ctgggtaacg gttgtttcga gttctaccac aaatgtgata atgaatgtat ggaaagtgta
1501 agaaacggaa cgtatgacta ctcgcagtat tcagaagaag caagactaag cagagaggaa
1561 ataaatggag taaaattgga atcaatggta acttaccaaa tactgtcaat ttattcaaca
1621 gtggcgagtt ccctagcatt ggcaatcatg gtggctggtc tatctttatg gatgtgctcc
1681 aatggatcgt tacaatgcag aatttgcatt tga
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