July Italy Swine Flu UK Sequences Released

[HenryN]

HA and NA sequences from a traveler from the UK to Italy have been released. These are July 12 sequences.

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

Jersey girl

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

LOCUS GQ421203 1701 bp cRNA linear VRL 29-JUL-2009
DEFINITION Influenza A virus (A/Ancona/05/2009(H1N1)) segment 4 hemagglutinin
(HA) gene, complete cds.
ACCESSION GQ421203
VERSION GQ421203.1 GI:254847841
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/Ancona/05/2009(H1N1))
ORGANISM Influenza A virus (A/Ancona/05/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Bagnarelli,P., Trotta,D., Marinelli,K. and Ferreri,M.L.
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2009) Laboratorio di Virologia, Dip. Scienze
Biomediche, Universita Politecnica delle Marche, Via Conca 71,
Ancona 60126, Italy
COMMENT Swine influenza A (H1N1) virus isolated during human swine flu
outbreak of 2009.
FEATURES Location/Qualifiers
source 1..1701
/organism="Influenza A virus (A/Ancona/05/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Ancona/05/2009"
/serotype="H1N1"
/isolation_source="nasopharingeal swab"
/host="Homo sapiens; age 17; gender F; student returning
from United Kingdom"
/db_xref="taxon:662862"
/segment="4"
/country="Italy"
/collection_date="12-Jul-2009"
/note="lineage: swl"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACT83741.1"
/db_xref="GI:254847842"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEEKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVREQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVXNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagaaaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actagtgctg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggaacaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac gagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctgttgga aaatgaaaga actttggact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagtta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcan aaatggaact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtatttg a

 

[Rwilmer]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

Any mutations in this one niman?

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

NA travel log

gb|GQ409646.1| Influenza A virus (A/Athens/2294/2009(H1N1)) s... 34.2 2.9
gb|GQ396511.1| Influenza A virus (A/Changsha/05/2009(H1N1)) s... 34.2 2.9
gb|GQ379856.1| Influenza A virus (A/Catalonia/517/2009(H1N1))... 34.2 2.9
gb|GQ379852.1| Influenza A virus (A/Catalonia/502/2009(H1N1))... 34.2 2.9
gb|GQ379840.1| Influenza A virus (A/Catalonia/476/2009(H1N1))... 34.2 2.9
gb|GQ379833.1| Influenza A virus (A/Catalonia/442/2009(H1N1))... 34.2 2.9
gb|GQ369275.1| Influenza A virus (A/Stockholm/37/2009(H1N1)) ... 34.2 2.9
gb|GQ365448.1| Influenza A virus (A/Sapporo/1/2009(H1N1)) seg... 34.2 2.9
gb|GQ355297.1| Influenza A virus (A/Catalonia/387/2009(H1N1))... 34.2 2.9
gb|GQ351316.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 34.2 2.9
gb|GQ338380.1| Influenza A virus (A/Oklahoma/03/2009(H1N1)) s... 34.2 2.9
gb|GQ160533.1| Influenza A virus (A/New Jersey/01/2009(H1N1))... 34.2 2.9
dbj|AB434314.1| Influenza A virus (A/swine/Chonburi/NIAH977/2... 34.2 2.9
dbj|AB434306.1| Influenza A virus (A/swine/Chonburi/NIAH9469/... 34.2 2.9
gb|EU045385.1| Influenza A virus (A/swine/Italy/110093/2002(H... 34.2 2.9
gb|EF101756.1| Influenza A virus (A/Thailand/271/2005(H1N1)) ... 34.2 2.9
gb|AY701754.1| Influenza A virus (A/swine/IDT/Re230/92(H1N1))... 34.2 2.9

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

HA travel log

b|GQ387430.1| Influenza A virus (A/Catalonia/378/2009(H1N1))... 34.2 2.9
gb|GQ387382.1| Influenza A virus (A/Italy/172/2009(H1N1)) hem... 34.2 2.9
gb|GQ365446.1| Influenza A virus (A/Sapporo/1/2009(H1N1)) seg... 34.2 2.9
gb|GQ355305.1| Influenza A virus (A/Catalonia/387/2009(H1N1))... 34.2 2.9
gb|GQ351314.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 34.2 2.9
gb|GQ258700.1| Influenza A virus (A/Athens/893/2009(H1N1)) se... 34.2 2.9
gb|GQ249333.1| Influenza A virus (A/Paris/2591/2009(H1N1)) se... 34.2 2.9
gb|GQ160534.1| Influenza A virus (A/New Jersey/01/2009(H1N1))... 34.2 2.9

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

HA

gb|EU139827.1| Influenza A virus (A/swine/Minnesota/37866/199... 40.1 0.047

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

HA

GTTGGAAAATGAAAGAA
gb|GQ229373.1| Influenza A virus (A/swine/Hong Kong/1110/2006... 34.2 2.9
gb|GQ229365.1| Influenza A virus (A/swine/Hong Kong/NS623/200... 34.2 2.9
gb|GQ229357.1| Influenza A virus (A/swine/Hong Kong/9656/2001... 34.2 2.9
gb|GQ229348.1| Influenza A virus (A/swine/Hong Kong/NS857/200... 34.2 2.9
gb|GQ229333.1| Influenza A virus (A/swine/Hong Kong/1562/2005... 34.2 2.9
gb|GQ229309.1| Influenza A virus (A/swine/Hong Kong/78/2003(H... 34.2 2.9
gb|GQ229269.1| Influenza A virus (A/swine/Hong Kong/915/2004(... 34.2 2.9
gb|GQ229261.1| Influenza A virus (A/swine/Hong Kong/NS837/200... 34.2 2.9
gb|GQ161104.1| Influenza A virus (A/swine/Bakum/1832/2000(H1N... 34.2 2.9
gb|CY040603.1| Influenza A virus (A/swine/North Carolina/4871... 34.2 2.9
gb|CY040602.1| Influenza A virus (A/swine/North Carolina/4775... 34.2 2.9
gb|CY040601.1| Influenza A virus (A/swine/North Carolina/4509... 34.2 2.9
gb|CY040600.1| Influenza A virus (A/swine/North Carolina/4488... 34.2 2.9
gb|CY040599.1| Influenza A virus (A/swine/North Carolina/4427... 34.2 2.9
gb|CY040595.1| Influenza A virus (A/swine/North Carolina/9856... 34.2 2.9
gb|CY040594.1| Influenza A virus (A/swine/North Carolina/4511... 34.2 2.9
gb|CY040593.1| Influenza A virus (A/swine/North Carolina/4488... 34.2 2.9
gb|CY040592.1| Influenza A virus (A/swine/North Carolina/4452... 34.2 2.9
gb|CY040591.1| Influenza A virus (A/swine/North Carolina/4350... 34.2 2.9
gb|CY040586.1| Influenza A virus (A/swine/North Carolina/1286... 34.2 2.9
gb|CY040578.1| Influenza A virus (A/swine/North Carolina/4257... 34.2 2.9
gb|CY040576.1| Influenza A virus (A/swine/North Carolina/3876... 34.2 2.9
gb|CY040573.1| Influenza A virus (A/swine/North Carolina/2629... 34.2 2.9
gb|CY040571.1| Influenza A virus (A/swine/North Carolina/1286... 34.2 2.9
gb|CY040569.1| Influenza A virus (A/swine/North Carolina/3456... 34.2 2.9
gb|CY040565.1| Influenza A virus (A/swine/North Carolina/4613... 34.2 2.9
gb|CY040563.1| Influenza A virus (A/swine/North Carolina/4390... 34.2 2.9
gb|CY040561.1| Influenza A virus (A/swine/North Carolina/2812... 34.2 2.9
gb|CY040559.1| Influenza A virus (A/swine/North Carolina/9647... 34.2 2.9
gb|CY040557.1| Influenza A virus (A/swine/North Carolina/4743... 34.2 2.9
gb|CY040555.1| Influenza A virus (A/swine/North Carolina/4685... 34.2 2.9
gb|CY040551.1| Influenza A virus (A/swine/North Carolina/4401... 34.2 2.9
gb|CY040549.1| Influenza A virus (A/swine/North Carolina/4395... 34.2 2.9
gb|CY040547.1| Influenza A virus (A/swine/North Carolina/4311... 34.2 2.9
gb|CY040543.1| Influenza A virus (A/swine/North Carolina/7386... 34.2 2.9
gb|CY040541.1| Influenza A virus (A/swine/Texas/36440-2/2005(... 34.2 2.9
gb|FJ986619.1| Influenza A virus (A/Wisconsin/87/2005(H1N1)) ... 34.2 2.9
gb|EU798788.1| Influenza A virus (A/swine/Korea/CY08/2007(H1N... 34.2 2.9
gb|EU798787.1| Influenza A virus (A/swine/Korea/PZ14/2006(H1N... 34.2 2.9
gb|EU798786.1| Influenza A virus (A/swine/Korea/PZ7/2006(H1N2... 34.2 2.9
gb|EU798785.1| Influenza A virus (A/swine/Korea/PZ4/2006(H1N2... 34.2 2.9
gb|EU798784.1| Influenza A virus (A/swine/Korea/Asan04/2006(H... 34.2 2.9
gb|EU798783.1| Influenza A virus (A/swine/Korea/JL04/2005(H1N... 34.2 2.9
gb|EU798782.1| Influenza A virus (A/swine/Korea/JL02/2005(H1N... 34.2 2.9
gb|EU798781.1| Influenza A virus (A/swine/Korea/JL01/2005(H1N... 34.2 2.9
gb|EU798780.1| Influenza A virus (A/swine/Korea/Hongsong2/200... 34.2 2.9
gb|EU409960.1| Influenza A virus (A/swine/Ohio/C62006/06(H1N1... 34.2 2.9
gb|EU053148.1| Influenza A virus (A/swine/Bakum/1832/2000(H1N... 34.2 2.9
gb|EU139831.1| Influenza A virus (A/swine/Kansas/00246/2004(H... 34.2 2.9
gb|EU139830.1| Influenza A virus (A/swine/Minnesota/00194/200... 34.2 2.9
gb|DQ666933.1| Influenza A virus (A/swine/Korea/S11/2005(H1N2... 34.2 2.9
gb|EF556201.1| Influenza A virus (A/swine/Guangxi/17/2005(H1N... 34.2 2.9
gb|EF556199.1| Influenza A virus (A/swine/Guangxi/13/2006(H1N... 34.2 2.9
gb|AY060050.1| Influenza A virus (A/SW/MN/16419/01(H1N2)) hem... 34.2 2.9
gb|AY060048.1| Influenza A virus (A/SW/MN/23124-S/01(H1N2)) h... 34.2 2.9
gb|AY060047.1| Influenza A virus (A/SW/MN/23124-T/01(H1N2)) h... 34.2 2.9
gb|AY038014.1| Influenza A virus (A/Turkey/MO/24093/99(H1N2))... 34.2 2.9
gb|AF455682.1| Influenza A virus (A/Swine/Illinois/100084/01 ... 34.2 2.9
gb|AF455681.1| Influenza A virus (A/Swine/Illinois/100085A/01... 34.2 2.9
gb|AF455680.1| Influenza A virus (A/Swine/Indiana/P12439/00 (... 34.2 2.9
gb|AF455677.1| Influenza A virus (A/Swine/North Carolina/9352... 34.2 2.9
gb|AF455675.1| Influenza A virus (A/Swine/Ohio/891/01(H1N2)) ... 34.2 2.9

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

HA

gb|CY026907.1| Influenza A virus (A/Virginia/UR06-0254/2007(H... 36.2 0.73
gb|EU004452.1| Influenza A virus (A/swine/Henan/01/06(H1N1)) ... 36.2 0.73
gb|CY008988.1| Influenza A virus (A/Denver/57(H1N1)) segment ... 36.2 0.73

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

NA

dbj|AB450452.1| Influenza A virus (A/duck/Miyagi/47/1977(H11N... 32.2 11
gb|EU050170.1| Influenza A virus (A/quail/Shantou/22124/2005(... 32.2 11
gb|EU050169.1| Influenza A virus (A/guinea fowl/Shantou/20773... 32.2 11
gb|EU050167.1| Influenza A virus (A/chukkar/Shantou/13393/200... 32.2 11
gb|EU050164.1| Influenza A virus (A/chukkar/Shantou/5275/2005... 32.2 11
gb|EU050161.1| Influenza A virus (A/chukkar/Shantou/1530/2005... 32.2 11
gb|EU050160.1| Influenza A virus (A/quail/Shantou/887/2005(H6... 32.2 11
gb|EU050159.1| Influenza A virus (A/quail/Shantou/687/2005(H6... 32.2 11
gb|EU050158.1| Influenza A virus (A/pheasant/Shantou/114/2005... 32.2 11
gb|EU050157.1| Influenza A virus (A/pheasant/Shantou/113/2005... 32.2 11
gb|EU050156.1| Influenza A virus (A/chukkar/Shantou/89/2005(H... 32.2 11
gb|EU050155.1| Influenza A virus (A/quail/Shantou/8002/2004(H... 32.2 11
gb|EU050154.1| Influenza A virus (A/chukkar/Shantou/7964/2004... 32.2 11
gb|EU050153.1| Influenza A virus (A/guinea fowl/Shantou/7211/... 32.2 11
gb|EU050151.1| Influenza A virus (A/quail/Shantou/7103/2004(H... 32.2 11
gb|EU050150.1| Influenza A virus (A/chukkar/Shantou/6865/2004... 32.2 11
gb|EU050149.1| Influenza A virus (A/quail/Shantou/6806/2004(H... 32.2 11
gb|EU050148.1| Influenza A virus (A/quail/Shantou/6651/2004(H... 32.2 11
gb|EU050147.1| Influenza A virus (A/guinea fowl/Shantou/6302/... 32.2 11
gb|EU050146.1| Influenza A virus (A/chukkar/Shantou/6282/2004... 32.2 11
gb|EU050145.1| Influenza A virus (A/quail/Shantou/6060/2004(H... 32.2 11
gb|EU050144.1| Influenza A virus (A/guinea fowl/Shantou/6042/... 32.2 11
gb|EU050143.1| Influenza A virus (A/chukkar/Shantou/5651/2004... 32.2 11
gb|EU050142.1| Influenza A virus (A/quail/Shantou/5136/2004(H... 32.2 11
gb|EU050141.1| Influenza A virus (A/partridge/Shantou/5028/20... 32.2 11
gb|EU050140.1| Influenza A virus (A/partridge/Shantou/4650/20... 32.2 11
gb|EU050139.1| Influenza A virus (A/quail/Shantou/4606/2004(H... 32.2 11
gb|EU050138.1| Influenza A virus (A/chukkar/Shantou/4536/2004... 32.2 11
gb|EU050137.1| Influenza A virus (A/partridge/Shantou/3936/20... 32.2 11
gb|EU050136.1| Influenza A virus (A/chukkar/Shantou/3574/2004... 32.2 11
gb|EU050135.1| Influenza A virus (A/guinea fowl/Shantou/3431/... 32.2 11
gb|EU050134.1| Influenza A virus (A/chukkar/Shantou/3322/2004... 32.2 11
gb|EU050133.1| Influenza A virus (A/partridge/Shantou/3201/20... 32.2 11
gb|EU050132.1| Influenza A virus (A/chukkar/Shantou/3182/2004... 32.2 11
gb|EU050131.1| Influenza A virus (A/pheasant/Shantou/2798/200... 32.2 11
gb|EU050130.1| Influenza A virus (A/quail/Shantou/2766/2004(H... 32.2 11
gb|EU050129.1| Influenza A virus (A/partridge/Shantou/2672/20... 32.2 11
gb|EU050128.1| Influenza A virus (A/quail/Shantou/2614/2004(H... 32.2 11
gb|EU050127.1| Influenza A virus (A/chukkar/Shantou/2478/2004... 32.2 11
gb|EU050125.1| Influenza A virus (A/chukkar/Shantou/2113/2004... 32.2 11
gb|EU050122.1| Influenza A virus (A/chukkar/Shantou/1550/2004... 32.2 11
gb|EU050121.1| Influenza A virus (A/partridge/Shantou/1297/20... 32.2 11
gb|EU050120.1| Influenza A virus (A/chukkar/Shantou/1201/2004... 32.2 11
gb|EU050119.1| Influenza A virus (A/quail/Shantou/815/2004(H6... 32.2 11
gb|EU050118.1| Influenza A virus (A/chukkar/Shantou/795/2004(... 32.2 11
gb|EU050117.1| Influenza A virus (A/turkey/Shantou/752/2004(H... 32.2 11
gb|EU050116.1| Influenza A virus (A/turkey/Shantou/135/2004(H... 32.2 11
gb|EU050115.1| Influenza A virus (A/chukkar/Shantou/121/2004(... 32.2 11
gb|EU050114.1| Influenza A virus (A/partridge/Shantou/35/2004... 32.2 11
gb|EU050113.1| Influenza A virus (A/quail/Shantou/3/2004(H6N1... 32.2 11
gb|EU050112.1| Influenza A virus (A/quail/Shantou/4443/2003(H... 32.2 11
gb|EU050111.1| Influenza A virus (A/chukkar/Shantou/4360/2003... 32.2 11
gb|EU050110.1| Influenza A virus (A/chukkar/Shantou/3978/2003... 32.2 11
gb|EU050109.1| Influenza A virus (A/quail/Shantou/3958/2003(H... 32.2 11
gb|EU050108.1| Influenza A virus (A/chukkar/Shantou/3809/2003... 32.2 11
gb|EU050107.1| Influenza A virus (A/quail/Shantou/3692/2003(H... 32.2 11
gb|EU050106.1| Influenza A virus (A/quail/Shantou/3212/2003(H... 32.2 11
gb|EU050105.1| Influenza A virus (A/chukkar/Shantou/2888/2003... 32.2 11
gb|EU050104.1| Influenza A virus (A/quail/Shantou/2602/2003(H... 32.2 11
gb|EU050103.1| Influenza A virus (A/quail/Shantou/1770/2003(H... 32.2 11
gb|EU050102.1| Influenza A virus (A/quail/Shantou/1218/2003(H... 32.2 11
gb|EU050101.1| Influenza A virus (A/quail/Shantou/1052/2003(H... 32.2 11
gb|EU050100.1| Influenza A virus (A/quail/Shantou/4680/2002(H... 32.2 11
gb|EU050099.1| Influenza A virus (A/quail/Shantou/1825/2002(H... 32.2 11
gb|EU050098.1| Influenza A virus (A/chukkar/Shantou/1712/2002... 32.2 11
gb|EU050097.1| Influenza A virus (A/partridge/Shantou/1403/20... 32.2 11
gb|EU050095.1| Influenza A virus (A/chukkar/Shantou/823/2002(... 32.2 11
gb|EU050093.1| Influenza A virus (A/chukkar/Shantou/467/2002(... 32.2 11
gb|EU050092.1| Influenza A virus (A/chukkar/Shantou/352/2002(... 32.2 11
gb|EU050091.1| Influenza A virus (A/quail/Shantou/5234/2001(H... 32.2 11
gb|EU050089.1| Influenza A virus (A/chicken/Shantou/3605/2001... 32.2 11
gb|EU050088.1| Influenza A virus (A/quail/Shantou/3329/2001(H... 32.2 11
gb|EU050087.1| Influenza A virus (A/quail/Shantou/2370/2001(H... 32.2 11
gb|EU050085.1| Influenza A virus (A/quail/Shantou/1811/2001(H... 32.2 11
gb|EU050083.1| Influenza A virus (A/quail/Shantou/1821/2000(H... 32.2 11
gb|EU050082.1| Influenza A virus (A/quail/Shantou/1808/2000(H... 32.2 11
dbj|AB271114.1| Influenza A virus (A/duck/Miyagi/66/77(H1N1))... 32.2 11
gb|DQ366324.1| Influenza A virus (A/duck/Vietnam/8/05(H5N1)) ... 32.2 11
gb|DQ366316.1| Influenza A virus (A/goose/Vietnam/3/05(H5N1))... 32.2 11
gb|DQ366308.1| Influenza A virus (A/duck/Vietnam/1/2005(H5N1)... 32.2 11
gb|AY207534.1| Influenza A virus (A/duck/Miyagil/9/77(H1N1)) ... 32.2 11
gb|CY005599.1| Influenza A virus (A/duck/Hong Kong/d73/1976(H... 32.2 11
gb|AF296752.1| Influenza A virus (A/Hong Kong/516/97(H5N1)) n... 32.2 11
emb|AJ427310.1| Influenza A virus (A/pheasant/Hong Kong/FY294... 32.2 11
emb|AJ410565.1| Influenza A virus genomic RNA for neuraminida... 32.2 11
emb|AJ410561.1| Influenza A virus genomic RNA for neuraminida... 32.2 11
emb|AJ410559.1| Influenza A virus genomic RNA for neuraminida... 32.2 11
emb|AJ410558.1| Influenza A virus genomic RNA for neuraminida... 32.2 11
emb|AJ410557.1| Influenza A virus genomic RNA for neuraminida... 32.2 11
gb|AF250481.1|AF250481 Influenza A virus (A/Teal/Hong Kong/W3... 32.2 11
gb|AF084275.1|AF084275 Influenza A virus (A/HongKong/486/97(H... 32.2 11
gb|AF084274.1|AF084274 Influenza A virus (A/HongKong/485/97(H... 32.2 11
gb|AF084273.1|AF084273 Influenza A virus (A/HongKong/483/97(H... 32.2 11
gb|AF084272.1|AF084272 Influenza A virus (A/HongKong/482/97(H... 32.2 11
gb|AF084271.1|AF084271 Influenza A virus (A/HongKong/481/97(H... 32.2 11
gb|AF046089.1| Influenza A virus (A/Hong Kong/156/97(H5N1)) n... 32.2 11
gb|AF046081.1| Influenza A virus (A/Chicken/Hong Kong/220/97 ... 32.2 11
gb|AF098554.1|AF098554 Influenza A virus (A/Goose/Hong Kong/w... 32.2 11
gb|AF098553.1|AF098553 Influenza A virus (A/Duck/Hong Kong/y2... 32.2 11
gb|AF098552.1|AF098552 Influenza A virus (A/Duck/Hong Kong/p4... 32.2 11
gb|AF098550.1|AF098550 Influenza A virus (A/Chicken/Hong Kong... 32.2 11
gb|AF098549.1|AF098549 Influenza A virus (A/Chicken/Hong Kong... 32.2 11
gb|AF098548.1|AF098548 Influenza A virus (A/Chicken/Hong Kong... 32.2 11
gb|AF098547.1|AF098547 Influenza A virus (A/Chicken/Hong Kong... 32.2 11
gb|AF102670.1| Influenza A virus (A/Hong Kong/542/97(H5N1)) n... 32.2 11
gb|AF102669.1| Influenza A virus (A/Hong Kong/514/97(H5N1)) n... 32.2 11
gb|AF102668.1| Influenza A virus (A/Hong Kong/483/1997(H5N1))... 32.2 11
gb|AF102667.1| Influenza A virus (A/Hong Kong/532/1997(H5N1))... 32.2 11
gb|AF102666.1| Influenza A virus (A/Hong Kong/503/97(H5N1)) n... 32.2 11
gb|AF102665.1| Influenza A virus (A/Hong Kong/491/97(H5N1)) n... 32.2 11
gb|AF102664.1| Influenza A virus (A/Hong Kong/485/97(H5N1)) n... 32.2 11
gb|AF102663.1| Influenza A virus (A/Hong Kong/481/97(H5N1)) n... 32.2 11
gb|AF102662.1| Influenza A virus (A/Hong Kong/538/97(H5N1)) n... 32.2 11
gb|AF102661.1| Influenza A virus (A/HongKong/97/98(H5N1)) neu... 32.2 11
gb|AF102660.1| Influenza A virus (A/Hong Kong/516/97(H5N1)) n... 32.2 11
gb|AF102659.1| Influenza A virus (A/Hong Kong/507/97(H5N1)) n... 32.2 11
gb|AF102658.1| Influenza A virus (A/Hong Kong/486/97(H5N1)) n... 32.2 11
gb|AF102657.1| Influenza A virus (A/Hong Kong/488/97(H5N1)) n... 32.2 11
gb|AF102656.1| Influenza A virus (A/Hong Kong/482/97(H5N1)) n... 32.2 11
gb|AF057292.1|AF057292 Influenza A virus (A/chicken/Hong Kong... 32.2 11
gb|AF028708.1|AF028708 Influenza A virus (A/HongKong/156/97(H... 32.2 11
gb|AF036357.1| Influenza A virus (A/HongKong/156/97(H5N1)) ne... 32.2 11

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

NA

gb|GQ292895.1| Influenza A virus (A/Mexico City/22/2009(H1N1)... 40.1 0.047
dbj|AB472014.1| Influenza A virus (A/duck/Tsukuba/718/2005(H1... 40.1 0.047

 

[AlaskaDenise]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

........ Influenza A virus (A/Denver/57(H1N1)) segment ... .

The year H1N1 went underground....interesting.

it's amazing how persistant some of those genes are.

.

 

[HenryN]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

The year H1N1 went underground....interesting.

it's amazing how persistant some of those genes are.

.

Yes, the viruses go underground (in swine), but now they are rolling out their weapons of mass descruction.

 

[hawkeye]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

were these isolates from a fatal case?

 

[gsgs]

Re: July Spain ex-UK Sequences Released

Re: July Spain ex-UK Sequences Released

isn't Ancona Italy

 

[HenryN]

Re: July Italy ex-UK Sequences Released

Re: July Italy ex-UK Sequences Released

isn't Ancona Italy

Yes, Title was changed to Italy (but these are really recent sequences from the UK, regardless of where they were sequenced)