Re: New case of H7 bird flu in Oxfordshire
no sequences from Britain.
Now we have the bird-index, so we know some indication
how to distinguish wild-bird flu from chicken-flu.
We had the H7N7 in Netherlands 2003, which was very close to the
bird-index, closer than anything else in humans.
Humans got conjunctivitis, which is unusual. One vet died after
developing E627K.
This could be a strain closely related to mallards, waterborne transmission,
maybe that's the reason for the conjunctivitis.
It's important to study how these original-flu strains adapt to humans
or poultry. Please give us the sequences.
Code:
000000 0 0000 000 00 0000 0 00
002356 0 3556 014 01 3344 2 01
079562 5 9346 141 50 0445 7 83
997537 4 1536 336 25 8628 3 57
------ - ---- --- -- ---- - --
DSIRQE K KHLL IAK YV NATP S PI
>A/Index/birds/2000(H3N8a) ...... . .... ... .. .... . ..
>A/NL/219/03(H7N7) YI.KRK R RYI. STR HM SVAS N L.
>A/Ck/NL/1/03(H7N7) Y.V... R RYIF ... HM .... N LV
>A/Ck/NL/03010132/2003(H7N7) YI.KR. R RYI. ST. HM SVAS N L.
D9Y(PB2),S79I(PB2),R355K(PB2),Q563R(PB2),E627K(PB2)
K54R(PB1)
K391R(PA),H535Y(PA),L543I(PA)
I13S(HA),A143T(HA)
Y52H(NP),V105M(NP)
N308S(NA),A346V(NA),A442T(NA),P458S(NA)
S19N(M2)
P85L(NS1)
E627K(PB2),K54R(PB1),V105M(NP), in 1918flu
K54R(PB1) in birds:
R >A/Dk/Perak/2458/1989(H3N8),1989,10,2,5
R >A/Ck/HK/220/97(H5N1),1997,1,2,17
R >A/teal/HK/W312/97(H6N1),1997,8,2,18
R >A/parakeet/Chiba/1/97(H9N2),1997,0,2,19
...
R >A/Ck/Karachi/NARC-100/04(H7N3),2004,1,2,10
R >A/shoveler/Netherlands/19/99(H11N9),1999,11,3,2
R >A/Netherlands/219/03(H7N7),2003,0,3,1
R >A/Eurasian widgeon/Sweden/1/04(H6N2),2004,16,3,3
R >A/mallard/Italy/299/05(H7N7),2005,3,3,4
R >A/mallard/Sweden/45/05(H2N3),2005,3,3,3
R >A/blue Gs/WI/711/1975(H5N2),1975,15,4,7
N >A/canvasback Dk/ALB/102/1976(H3N6)08/13,1976,10,4,3
E >A/Dk/LA/17G/1987(H3N8),1987,10,4,17
R >A/mallard/Minnesota/371/98(H4N2),1998,3,4,3
R >A/Ck/Guatemala/45511-1/00(H5N2),2000,1,4,8
R >A/red knot/DE/1587/01(H10N7),2001,0,4,2
R >A/Northern shoveler/NC/6412-052/05(H7N6),2005,11,4,2
Q >A/green-winged teal/Minnesota/Sg-00228/06(H6N8)09/30,2006,8,4,4
R >A/cinnamon teal/CA/HKWF1111/07(H5N7)12/02,2007,8,4,5
R >A/ruddy turnstone/New Jersey/Sg-00516/08(H10N7)05/28,2008,9,4,6
R >A/ruddy turnstone/Delaware/Sg-00538/08(H1N5)05/31,2008,9,4,5
R >A/N.pintail/South Dakota/Sg-00456/08(H6N1)08/22,2008,6,4,5
R >A/mallard/Minnesota/Sg-00462/08(H6N1)09/16,2008,3,4,4
R >A/mallard/Minnesota/Sg-00464/08(H6N1)09/16,2008,3,4,4
R >A/red-necked stint/AUS/5745/1981(H12N9)03/05,1981,5,5,12
54 gsbi2.p13 100 E:10 K:2564 N:4 Q:1 R:85
E627K(PB2) in birds:
V >A/Tk/Israel/90710/00(H9N2),2000,2,2,13
K >A/Bar-h Gs/Qinghai/59/05(H5N1),2005,15,2,12
...
K >A/Dk/HK/702/1979-Qa adapted(H9N2),2000,10,2,10
G >A/Ck/Guangxi/4/99(H9N2),1999,1,2,25
K >A/tree sparrow/THA/VSMU-16-RBR/05(H5N1),2005,0,2,7
K >A/Ck/Italy/5093/99(H7N1),1999,1,3,8
K >A/Netherlands/219/03(H7N7),2003,0,3,5
G >A/mallard Dk/ALB/322/1988(H1N1),1988,3,4,4
K >A/laughing gull/NJ/276/1989(H6N8),1989,7,4,5
K >A/emu/TX/39924/1993(H5N2),1993,0,4,13
K >A/Ck/NY/21665-73/98(H1N1),1998,1,4,40
627 gsbi1.p13 212 A:1 E:2148 G:2 K:166 S:1 V:42
V105M(NP) in birds: many
...
105 gsbi5.p13 1578 A:5 H:1 I:90 K:3 L:4 M:1014 T:10 V:1465
54R(PB1) was in 1918flu and in early human H1N1, but swine had 54K.
7 birds have similar sequences to 1918flu in PB1 one of them has 54R :
blue goose/Wisconsin/711/1975
geese are more poultry-like, flu-wise
-----edit------
deleted:
Now Cancun made the human 54R, besides other mutations whose meaning is unclear.
I had confused that with V105M(NP)