tetano
Editor, Senior Moderator
Pathogens
. 2021 Mar 10;10(3):325.
doi: 10.3390/pathogens10030325.
Evaluation of " Caterina assay": An Alternative Tool to the Commercialized Kits Used for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Identification
Germano Orr?[SUP] 1 2 [/SUP], Alessandra Scano[SUP] 1 2 [/SUP], Sara Fais[SUP] 1 [/SUP], Miriam Loddo[SUP] 2 [/SUP], Mauro Giovanni Carta[SUP] 3 [/SUP], Giorgio Carlo Steri[SUP] 4 [/SUP], Simonetta Santus[SUP] 4 [/SUP], Riccardo Cappai[SUP] 2 [/SUP], Maria Laura Ferrando[SUP] 1 [/SUP], Ferdinando Coghe[SUP] 2 [/SUP]
Affiliations
Abstract
Here we describe the first molecular test developed in the early stage of the pandemic to diagnose the first cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in Sardinian patients in February-March 2020, when diagnostic certified methodology had not yet been adopted by clinical microbiology laboratories. The "Caterina assay" is a SYBR[SUP]?[/SUP]Green real-time reverse-transcription polymerase chain reaction (rRT-PCR), designed to detect the nucleocapsid phosphoprotein (N) gene that exhibits high discriminative variation RNA sequence among bat and human coronaviruses. The molecular method was applied to detect SARS-CoV-2 in nasal swabs collected from 2110 suspected cases. The study article describes the first molecular test developed in the early stage of the declared pandemic to identify the coronavirus disease 2019 (COVID-19) in Sardinian patients in February-March 2020, when a diagnostic certified methodology had not yet been adopted by clinical microbiology laboratories. The assay presented high specificity and sensitivity (with a detection limit ?50 viral genomes/?L). No false-positives were detected, as confirmed by the comparison with two certified commercial kits. Although other validated molecular methods are currently in use, the Caterina assay still represents a valid and low-cost detection procedure that could be applied in countries with limited economic resources.
Keywords: COVID-19 detection; DNA folding; N protein; SYBR?Green real-time PCR; melting curve analysis; molecular diagnostic of SARS-CoV-2.
. 2021 Mar 10;10(3):325.
doi: 10.3390/pathogens10030325.
Evaluation of " Caterina assay": An Alternative Tool to the Commercialized Kits Used for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Identification
Germano Orr?[SUP] 1 2 [/SUP], Alessandra Scano[SUP] 1 2 [/SUP], Sara Fais[SUP] 1 [/SUP], Miriam Loddo[SUP] 2 [/SUP], Mauro Giovanni Carta[SUP] 3 [/SUP], Giorgio Carlo Steri[SUP] 4 [/SUP], Simonetta Santus[SUP] 4 [/SUP], Riccardo Cappai[SUP] 2 [/SUP], Maria Laura Ferrando[SUP] 1 [/SUP], Ferdinando Coghe[SUP] 2 [/SUP]
Affiliations
- PMID: 33802049
- DOI: 10.3390/pathogens10030325
Abstract
Here we describe the first molecular test developed in the early stage of the pandemic to diagnose the first cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in Sardinian patients in February-March 2020, when diagnostic certified methodology had not yet been adopted by clinical microbiology laboratories. The "Caterina assay" is a SYBR[SUP]?[/SUP]Green real-time reverse-transcription polymerase chain reaction (rRT-PCR), designed to detect the nucleocapsid phosphoprotein (N) gene that exhibits high discriminative variation RNA sequence among bat and human coronaviruses. The molecular method was applied to detect SARS-CoV-2 in nasal swabs collected from 2110 suspected cases. The study article describes the first molecular test developed in the early stage of the declared pandemic to identify the coronavirus disease 2019 (COVID-19) in Sardinian patients in February-March 2020, when a diagnostic certified methodology had not yet been adopted by clinical microbiology laboratories. The assay presented high specificity and sensitivity (with a detection limit ?50 viral genomes/?L). No false-positives were detected, as confirmed by the comparison with two certified commercial kits. Although other validated molecular methods are currently in use, the Caterina assay still represents a valid and low-cost detection procedure that could be applied in countries with limited economic resources.
Keywords: COVID-19 detection; DNA folding; N protein; SYBR?Green real-time PCR; melting curve analysis; molecular diagnostic of SARS-CoV-2.