tetano
Editor, Senior Moderator
PLoS One
. 2022 Sep 15;17(9):e0274538.
doi: 10.1371/journal.pone.0274538. eCollection 2022.
Robust and efficient COVID-19 detection techniques: A machine learning approach
Md Mahadi Hasan[SUP] 1 [/SUP], Saba Binte Murtaz[SUP] 1 [/SUP], Muhammad Usama Islam[SUP] 2 [/SUP], Muhammad Jafar Sadeq[SUP] 1 [/SUP], Jasim Uddin[SUP] 3 [/SUP]
Affiliations
Abstract
The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be infected by and closely related to Bats. However, over the periods of learning and critical development of experimental evidence, it is found to have some similarities with several gene clusters and virus proteins identified in animal-human transmission. Despite this substantial evidence and learnings, there is limited exploration regarding the SARS-CoV-2 genome to putative microRNAs (miRNAs) in the virus life cycle. In this context, this paper presents a detection method of SARS-CoV-2 precursor-miRNAs (pre-miRNAs) that helps to identify a quick detection of specific ribonucleic acid (RNAs). The approach employs an artificial neural network and proposes a model that estimated accuracy of 98.24%. The sampling technique includes a random selection of highly unbalanced datasets for reducing class imbalance following the application of matriculation artificial neural network that includes accuracy curve, loss curve, and confusion matrix. The classical approach to machine learning is then compared with the model and its performance. The proposed approach would be beneficial in identifying the target regions of RNA and better recognising of SARS-CoV-2 genome sequence to design oligonucleotide-based drugs against the genetic structure of the virus.
. 2022 Sep 15;17(9):e0274538.
doi: 10.1371/journal.pone.0274538. eCollection 2022.
Robust and efficient COVID-19 detection techniques: A machine learning approach
Md Mahadi Hasan[SUP] 1 [/SUP], Saba Binte Murtaz[SUP] 1 [/SUP], Muhammad Usama Islam[SUP] 2 [/SUP], Muhammad Jafar Sadeq[SUP] 1 [/SUP], Jasim Uddin[SUP] 3 [/SUP]
Affiliations
- PMID: 36107971
- DOI: 10.1371/journal.pone.0274538
Abstract
The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths with infection rates of over 524 million. With significant reservations, initially, the SARS-CoV-2 virus was suspected to be infected by and closely related to Bats. However, over the periods of learning and critical development of experimental evidence, it is found to have some similarities with several gene clusters and virus proteins identified in animal-human transmission. Despite this substantial evidence and learnings, there is limited exploration regarding the SARS-CoV-2 genome to putative microRNAs (miRNAs) in the virus life cycle. In this context, this paper presents a detection method of SARS-CoV-2 precursor-miRNAs (pre-miRNAs) that helps to identify a quick detection of specific ribonucleic acid (RNAs). The approach employs an artificial neural network and proposes a model that estimated accuracy of 98.24%. The sampling technique includes a random selection of highly unbalanced datasets for reducing class imbalance following the application of matriculation artificial neural network that includes accuracy curve, loss curve, and confusion matrix. The classical approach to machine learning is then compared with the model and its performance. The proposed approach would be beneficial in identifying the target regions of RNA and better recognising of SARS-CoV-2 genome sequence to design oligonucleotide-based drugs against the genetic structure of the virus.