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PLoS. Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk

Giuseppe

Emeritus
Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk (PLoS, abstract, edited)


[Source: PLoS, full text: <cite cite="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012591">PLoS ONE: Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk</cite>. Abstract, edited.]

Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk


Yanlong Cong 1#, Guangmei Wang 1#, Zhenhong Guan 2#, Shuang Chang 1, Quanpeng Zhang 1, Guilian Yang 3, Weili Wang 4, Qingfeng Meng 4, Weiming Ren 3, Chunfeng Wang 3*, Zhuang Ding 1*
1 College of Animal Science and Veterinary Medicine, Jilin University, Changchun, Jilin, China,
2 Institute of Zoonoses, Jilin University, Changchun, Jilin, China,
3 College of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China,
4 Jilin Entry-Exit Inspection and Quarantine Bureau, Changchun, Jilin, China


Abstract

Background
Human-like H3N2 influenza viruses have repeatedly been transmitted to domestic pigs in different regions of the world, but it is still uncertain whether any of these variants could become established in pig populations. The fact that different subtypes of influenza viruses have been detected in pigs makes them an ideal candidate for the genesis of a possible reassortant virus with both human and avian origins. However, the determination of whether pigs can act as a ?mixing vessel? for a possible future pandemic virus is still pending an answer. This prompted us to gather the epidemiological information and investigate the genetic evolution of swine influenza viruses in Jilin, China.

Methods
Nasopharyngeal swabs were collected from pigs with respiratory illness in Jilin province, China from July 2007 to October 2008. All samples were screened for influenza A viruses. Three H3N2 swine influenza virus isolates were analyzed genetically and phylogenetically.

Results
Influenza surveillance of pigs in Jilin province, China revealed that H3N2 influenza viruses were regularly detected from domestic pigs during 2007 to 2008. Phylogenetic analysis revealed that two distinguishable groups of H3N2 influenza viruses were present in pigs: the wholly contemporary human-like H3N2 viruses (represented by the Moscow/10/99-like sublineage) and double-reassortant viruses containing genes from contemporary human H3N2 viruses and avian H5 viruses, both co-circulating in pig populations.

Conclusions
The present study reports for the first time the coexistence of wholly human-like H3N2 viruses and double-reassortant viruses that have emerged in pigs in Jilin, China. It provides updated information on the role of pigs in interspecies transmission and genetic reassortment of influenza viruses.

Citation: Cong Y, Wang G, Guan Z, Chang S, Zhang Q, et al. (2010) Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk. PLoS ONE 5(9): e12591. doi:10.1371/journal.pone.0012591

Editor: Ramy K. Aziz, Cairo University, Egypt
Received: January 29, 2010; Accepted: July 26, 2010; Published: September 7, 2010
Copyright: ? 2010 Cong et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Funding: This study was supported by the Jilin University Scientific Research Startup Fund (4305050102B6), the Jilin University Basic Science Research Fund (200903334) and the National Natural Scientific Fund (30972192). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Competing interests: The authors have declared that no competing interests exist.

* E-mail: congyanlong@126.com (ZD); wangchunfeng@jlau.edu.cn (CW)
# These authors contributed equally to this work.

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------
 
Re: PLoS. Reassortant between H3N2(1,..,6) and LP-H5(7,8) in Pigs

Re: PLoS. Reassortant between H3N2(1,..,6) and LP-H5(7,8) in Pigs

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935369/?tool=pubmed

H3N2 in Jilin pigs in 2007-2008
{2-3 years ago ! if it were important, they had told us earlier ?!?!}
{OK, sequences were uploaded 2009/11/30 so only 1-2 years}


1.) Moscow/10/99-like
2.) "double-reassortant : contemporary human H3N2 + avian H5
{HP ?}


double-reassortant viruses containing genes from
contemporary human (PB2, PB1, PA, HA, NP, and NA)
and avian H5 (M and NS)

Sw/Jilin/37/08
Sw/Jilin/5/07
Sw/Jilin/19/07

H5N3 viruses (A/Dk/Altai/1285/1991,
A/Dk/Primorie/2633/2001,
A/Anasplatyrhynchos/Altai/1285/1991,
A/Migratory Dk/Jiangxi/13487/2005
The NS gene of Sw/Jilin/37/08 had a close relationship with
A/Mallard/Italy/4223-2/2006 (H5N2) and
A/Dk/Primorie/2633/2001 (H5N3)


ahh, LP H5N3 and H5N2
not the 15BP deletion in NS=segment 8


total of 279 nasopharyngeal swabs were collected in Jilin province,
China from July 2007 to October 2008


GU215015 - GU215038

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215015
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215016
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215017
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215018
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215019
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215020
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215021
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215022

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215023
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215024
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215025
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215026
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215027
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215028
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215029
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215030

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215031
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215032
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215033
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215034
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215035
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215036
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215037
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=GU215038



Submitted (18-NOV-2009) Laboratory of Infectious Diseases, College
of Animal Science and Veterinary Medicine, Jilin University, 5333
Xi'an Road, Changchun, Jilin 130062, China

not the Harbin lab
 
Re: PLoS. Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk

just only the one 2008-virus has reassorted
the H3 went from human to swine ~10 years ago

differences in promille of available nucleotides in the coding region
Code:
  1 >A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844   
  1:  0,  0,  0,  0,  0,  0,  0,  0   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2:  0, 10,  7, 13, 56,  4,  2,  4   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3:  6,  9,  4, 24,  2, 33,114,133   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4: 23, 28, 29, 42, 28, 40, 12, 15   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5: 10,  9, 12, 15, 18, 21,  8,  9   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6: 15, 15, 15, 34, 15, 18, 15,  9   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:147, 36,171, 49,166, 24,111,171   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  2 >A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844   
  1:  0, 10,  7, 13, 56,  4,  2,  4   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2:  0,  0,  0,  0,  0,  0,  0,  0   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3:  5,  8,  3, 14, 56, 33,112,133   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4: 24, 25, 26, 48, 63, 40, 10, 15   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5: 11,  8,  8, 25, 60, 21,  6,  9   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6: 16, 15, 12, 45, 61, 19, 13,  9   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:147, 33,168, 58,156, 24,109,171   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  3 >A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844   
  1:  6,  9,  4, 24,  2, 33,114,133   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2:  5,  8,  3, 14, 56, 33,112,133   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3:  0,  0,  0,  0,  0,  0,  0,  0   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4: 24, 25, 27, 53, 30, 58,107,130   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5: 11,  6,  9, 29, 20, 46,113,132   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6: 16, 15, 13, 51, 16, 42,113,130   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:146, 31,169, 62,168, 48,111,153   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  4 >1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844   
  1: 23, 28, 29, 42, 28, 40, 12, 15   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2: 24, 25, 26, 48, 63, 40, 10, 15   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3: 24, 25, 27, 53, 30, 58,107,130   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4:  0,  0,  0,  0,  0,  0,  0,  0   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5: 18, 21, 19, 31, 16, 29,  8,  8   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6: 31, 32, 26, 56, 29, 48, 18, 17   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:152, 25,161, 34,162, 31,106,170   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  5 >1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844   
  1: 10,  9, 12, 15, 18, 21,  8,  9   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2: 11,  8,  8, 25, 60, 21,  6,  9   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3: 11,  6,  9, 29, 20, 46,113,132   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4: 18, 21, 19, 31, 16, 29,  8,  8   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5:  0,  0,  0,  0,  0,  0,  0,  0   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6: 15, 15, 10, 28, 19, 29, 16, 11   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:156, 29,165, 39,167, 12,108,169   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  6 >2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842   
  1: 15, 15, 15, 34, 15, 18, 15,  9   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2: 16, 15, 12, 45, 61, 19, 13,  9   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3: 16, 15, 13, 51, 16, 42,113,130   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4: 31, 32, 26, 56, 29, 48, 18, 17   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5: 15, 15, 10, 28, 19, 29, 16, 11   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6:  0,  0,  0,  0,  0,  0,  0,  0   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:156, 39,168, 64,168, 31,112,169   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844

  7 >A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844   
  1:147, 36,171, 49,166, 24,111,171   A/Sw/Jilin/5/2007/09/21(H3N2)              1121 2274  909 1701 1497 1409  957  844
  2:147, 33,168, 58,156, 24,109,171   A/Sw/Jilin/19/2007/11/09(H3N2)             1121 2273  909 1700 1497 1410  956  844
  3:146, 31,169, 62,168, 48,111,153   A/Sw/Jilin/37/2008/10/30(H3N2)             1121 2273  909 1701 1496 1410  957  844
  4:152, 25,161, 34,162, 31,106,170   1989//,7852,CHN,A/Beijing/353/89           2280 2272 2151 1701 1497 1409  982  844
  5:156, 29,165, 39,167, 12,108,169   1997/11/29,10924,USA,A/NY/503/97           2280 2274 2151 1701 1497 1410  982  844
  6:156, 39,168, 64,168, 31,112,169   2003/04/23,12897,USA,A/NY/214/03           2280 2274 2151 1701 1497 1410  975  842
  7:  0,  0,  0,  0,  0,  0,  0,  0   A/Sw/Index/triple-reassortant/1998(H3N2)   2280 2274 2151 1701 1497 1410  982  844
 
Re: PLoS. Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk

M1:
0 0 751 2728 >A/Sw/Jilin/37/2008/10/30(H3N2)
146 11 751 1149 >A/Anas platyrhynchos/Altai/1285/1991(H5N3),1991,0,3,0
146 11 751 1152 >A/Dk/Altai/1285/1991(H5N3)08/15,1991,10,3,0
159 12 751 736 >A/migratory Dk/Jiang Xi/13487/05(H5N3),2005,10,2,0
159 12 751 1202 >A/mallard/Netherlands/02/00(H10N7),2000,3,3,0
173 13 751 154 >A/Dk/Taiwan/WB29/99(H6N1),1999,10,2,1

NS:
0 0 838 3263 >A/Sw/Jilin/37/2008/10/30(H3N2)
143 12 836 1704 >A/Dk/Primorie/2633/01(H5N3),2001,10,3,0
143 12 838 427 >A/Dk/MNG/47/01(H7N1),2001,10,2,0
143 12 838 1708 >A/Dk/Primorie/2633/01(H5N3)08/24,2001,10,3,0
143 12 838 1899 >A/mallard/Italy/4223-2/06(H5N2)11/11,2006,3,3,0
155 13 838 496 >A/Dk/Yunnan/435/02(H5N3),2002,10,2,0
155 13 838 690 >A/Dk/Jiangxi/1742/03(H7N7),2003,10,2,0
155 13 838 1728 >A/Anas querquedula/Astrakhan/3091/02(H4N8)09/09,2002,0,3,0
155 13 838 1733 >A/mallard/Denmark/64650/03(H5N7),2003,3,3,0
168 14 830 1233 >A/aquatic bird/Korea/KN-4/05(H3N8),2005,0,2,0
168 14 831 6 >A/teal/Egypt/912908/05(H10N7),2005,8,1,0


5 differences to the bird-index in segment 7
1 difference to the bird-index in segment 8

how do pigs live in Jilin,do they have contact with ducks ?
 
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