tetano
Editor, Senior Moderator
Open Forum Infect Dis. 2017 Sep 27;4(3)
fx166. doi: 10.1093/ofid/ofx166. eCollection 2017 Summer.
[h=1]Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model.[/h] Nasserie T[SUP]1,[/SUP][SUP]2[/SUP], Tuite AR[SUP]3[/SUP], Whitmore L[SUP]4[/SUP], Hatchette T[SUP]5,[/SUP][SUP]6[/SUP], Drews SJ[SUP]7,[/SUP][SUP]8[/SUP], Peci A[SUP]9[/SUP], Kwong JC[SUP]2,[/SUP][SUP]10,[/SUP][SUP]9,[/SUP][SUP]3[/SUP], Friedman D[SUP]4[/SUP], Garber G[SUP]9[/SUP], Gubbay J[SUP]9[/SUP], Fisman DN[SUP]2,[/SUP][SUP]11[/SUP].
[h=3]Author information[/h]
[h=3]Abstract[/h] [h=4]Background:[/h] Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging.
[h=4]Methods:[/h] We used the previously described "incidence decay with exponential adjustment" (IDEA) model, a 2-parameter phenomenological model, to evaluate the characteristics of the 2015-2016 influenza season in 4 Canadian jurisdictions: the Provinces of Alberta, Nova Scotia and Ontario, and the City of Ottawa. Model fits were updated weekly with receipt of incident virologically confirmed case counts. Best-fit models were used to project seasonal influenza peaks and epidemic final sizes.
[h=4]Results:[/h] The 2015-2016 influenza season was mild and late-peaking. Parameter estimates generated through fitting were consistent in the 2 largest jurisdictions (Ontario and Alberta) and with pooled data including Nova Scotia counts (R[SUB]0[/SUB] approximately 1.4 for all fits). Lower R[SUB]0[/SUB] estimates were generated in Nova Scotia and Ottawa. Final size projections that made use of complete time series were accurate to within 6% of true final sizes, but final size was using pre-peak data. Projections of epidemic peaks stabilized before the true epidemic peak, but these were persistently early (~2 weeks) relative to the true peak.
[h=4]Conclusions:[/h] A simple, 2-parameter influenza model provided reasonably accurate real-time projections of influenza seasonal dynamics in an atypically late, mild influenza season. Challenges are similar to those seen with more complex forecasting methodologies. Future work includes identification of seasonal characteristics associated with variability in model performance.
[h=4]KEYWORDS:[/h] epidemics; epidemiology; forecasting; influenza; mathematical modeling
PMID: 29497629 PMCID: PMC5781299 DOI: 10.1093/ofid/ofx166
fx166. doi: 10.1093/ofid/ofx166. eCollection 2017 Summer.[h=1]Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model.[/h] Nasserie T[SUP]1,[/SUP][SUP]2[/SUP], Tuite AR[SUP]3[/SUP], Whitmore L[SUP]4[/SUP], Hatchette T[SUP]5,[/SUP][SUP]6[/SUP], Drews SJ[SUP]7,[/SUP][SUP]8[/SUP], Peci A[SUP]9[/SUP], Kwong JC[SUP]2,[/SUP][SUP]10,[/SUP][SUP]9,[/SUP][SUP]3[/SUP], Friedman D[SUP]4[/SUP], Garber G[SUP]9[/SUP], Gubbay J[SUP]9[/SUP], Fisman DN[SUP]2,[/SUP][SUP]11[/SUP].
[h=3]Author information[/h]
[h=3]Abstract[/h] [h=4]Background:[/h] Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging.
[h=4]Methods:[/h] We used the previously described "incidence decay with exponential adjustment" (IDEA) model, a 2-parameter phenomenological model, to evaluate the characteristics of the 2015-2016 influenza season in 4 Canadian jurisdictions: the Provinces of Alberta, Nova Scotia and Ontario, and the City of Ottawa. Model fits were updated weekly with receipt of incident virologically confirmed case counts. Best-fit models were used to project seasonal influenza peaks and epidemic final sizes.
[h=4]Results:[/h] The 2015-2016 influenza season was mild and late-peaking. Parameter estimates generated through fitting were consistent in the 2 largest jurisdictions (Ontario and Alberta) and with pooled data including Nova Scotia counts (R[SUB]0[/SUB] approximately 1.4 for all fits). Lower R[SUB]0[/SUB] estimates were generated in Nova Scotia and Ottawa. Final size projections that made use of complete time series were accurate to within 6% of true final sizes, but final size was using pre-peak data. Projections of epidemic peaks stabilized before the true epidemic peak, but these were persistently early (~2 weeks) relative to the true peak.
[h=4]Conclusions:[/h] A simple, 2-parameter influenza model provided reasonably accurate real-time projections of influenza seasonal dynamics in an atypically late, mild influenza season. Challenges are similar to those seen with more complex forecasting methodologies. Future work includes identification of seasonal characteristics associated with variability in model performance.
[h=4]KEYWORDS:[/h] epidemics; epidemiology; forecasting; influenza; mathematical modeling
PMID: 29497629 PMCID: PMC5781299 DOI: 10.1093/ofid/ofx166