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The Origins of Pandemic Influenza -Reassortment events

turkali10

Well-known member
In 1957 and in 1968, reassortment events led to new viruses that resulted in pandemic influenza. The 1957 influenza virus (Asian influenza, an H2N2 virus) acquired three genetic segments from an avian species (a hemagglutinin, a neuraminidase, and a polymerase gene, PB1), and the 1968 influenza virus (Hong Kong influenza, an H3N2 virus) acquired two genetic segments from an avian species (hemagglutinin and PB1). Future pandemic strains could arise through either mechanism.


In both 1957 and 1968, a new influenza virus emerged because of reassortment events involving two influenza viruses. The segmented genome allows each influenza A virus to exchange genetic material with other influenza A viruses. In 1957, dual infection of an individual animal — probably a human, but possibly another species, such as a pig — with an avian H2N2 influenza and a human H1N1 influenza resulted in the emergence of a new influenza virus containing the hemagglutinin, the neuraminidase, and the gene for one of the polymerase proteins (PB1) from the avian virus, along with the remaining five genetic segments from the human H1N1 influenza virus.

The new reassortant virus circulated in humans until 1968, when it was replaced by another reassortant virus, the H3N2 Hong Kong virus — created by the replacement of the hemagglutinin (H2) and polymerase (PB1) genes of the H2N2 virus with two new avian genes, H3 and a new PB1. Today, the descendants of this virus continue to cause the majority of influenza infections in humans (see diagram). Five of the genes of today's H3N2 influenza virus have their origin in the 1918 pandemic.


http://content.nejm.org/cgi/content/full/353/21/2209



"Swine flu showed signs of posing a human pandemic threat more than a decade ago - but the danger was largely ignored, it has been claimed.

In 1976 there was an outbreak of swine flu in humans at a military camp in New Jersey with one death. The virus was not able to spread and soon "fizzled out".

But in 1998 the H1N1 strain combined with both human and bird viruses to produce "triple reassortants" that surfaced in Minnesota, Iowa and Texas.

This was a much more aggressive form of flu that should have set alarm bells ringing, according to New Scientist.

The bird element - two genes for the RNA polymerase enzyme - allowed the viruses to replicate rapidly and become more virulent. By 1999 they had become the dominant flu strain in North American pigs and were actively evolving, the report said.

Many different versions evolved, making the creation of a strain that could infect humans more likely. And by switching surface proteins, the viruses adapted to evade the pig immune system.

Today there are so many kinds of swine flu that outbreaks at pig farms are no longer seasonal, New Scientist said. One in five US pig producers were said to make their own vaccines because the vaccine industry could not keep up with the changes.

One US expert, Richard Webby from St Jude's Children's Research Hospital in Memphis, Tennessee, warned in 2004 that pigs in the US were "an increasingly important reservoir of viruses with human pandemic potential", the report said.

A similar warning was issued last year by Amy Vincent, of the US Department of Agriculture, it was claimed. She said the rapid evolution of swine flu posed the "potential for pandemic influenza emergence in North America".

The Mexican virus strain causing panic today has pig surface proteins the human immune system cannot recognise.

It also harbours bird flu genes similar to those that have made other strains lethal to humans. The flu virus that killed around 50 million people in 1918 is thought to have originated in birds.

Despite the warnings from veterinary scientists, medical researchers focused on human flu viruses failed to see the threat, said New Scientist.

New Scientist said: "All the evidence suggests that swine flu was a disaster waiting to happen. But it got little research attention, perhaps because it caused mild infections in people which didn't spread. Now one swine flu virus has stopped being so well behaved."
 

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Re: The Origins of Pandemic Influenza -Reassortment events

afterwards everyone knows it, why it had come this way.

Most warnings were about birdflu, H5N1.
Then I remember warnings about new H3N1 and H2N3 in pigs

Also H7 2003 in NL, 2007 in Wales


many warnings
later people know what happened and just pick the warnings
that did fit, while omitting the others
 
Re: The Origins of Pandemic Influenza -Reassortment events

Swine influenza viruses possessing avian genes were first detected in Europe in 1979 (Scholtissek et al., 1983, Virology,
129, 521?523) and continue to circulate in pigs in that region of the world. To characterize the molecular epidemiology of
swine influenza viruses currently circulating in Europe, we used dot-blot hybridization and sequence analysis to determine
the origin of the genes encoding the nonsurface proteins (??internal?? genes) of 10 H1N1 and 11 H3N2 swine influenza
viruses isolated in Italy between 1992 and 1995. All of the 126 genes examined were of avian origin; thus the currently
circulating H3N2 strains which possess A/Port Chalmers/1/73-like surface glycoproteins appear to be descendants of the
reassortant human?avian viruses that emerged between 1983 and 1985 in Italy. Sequence analysis of matrix (M), nonstructural,
and nucleoprotein genes, as well as phylogenetic analysis of M gene showed that the H1N1 and H3N2 viruses from
the pigs were closely related to recent isolates of the avian-like swine H1N1 influenza strain currently circulating in northern
Europe and were distinguishable from the genes of viruses isolated from European swine in 1979. To evaluate the frequency
of transmission of swine H1N1 and H3N2 viruses to man, we tested 123 human sera for hemagglutination-inhibiting
antibodies against avian and mammalian H1N1 and H3N2 virus strains. Our findings indicate that swine influenza viruses
possessing A/Port Chalmers/1/73-like hemagglutinin may have transmitted to approximately 20% of young persons under
20 years of age who had contact with pigs. Thus, H3N2 swine viruses, possibly possessing avian-derived internal genes,
may be entering humans more often than was previously thought. We strongly recommend that pigs be regularly monitored
as a potential early warning system for detection of future pandemic strains.




http://birdflubook.com/resources/campitelli310.pdf
 
Re: The Origins of Pandemic Influenza -Reassortment events

In the new millennium, emergence of three novel
Influenza A viruses; SARS virus (a novel Corona virus)
in 2003, Influenza H5N1 ('Avian flu') in 2004 and the
present new strain of Influenza virus 2009 A/H1N1 has
demonstrated the collective vulnerability of humankind
to pandemic spread of respiratory viruses. In April 2009,
a novel influenza A virus, also called swine-origin influenza
A (H1N1) virus (S-OIV), was identified in Mexico (1).
After its discovery, S-OIV rapidly spread throughout the
world within few weeks. This novel S-OIV is a hybrid
virus containing a combination of swine, avian, and human
influenza virus genes. In sharp contrast to SARS and
Avian Influenza H5N1 viruses which emerged from the
Asian continent, S-OIV virus emerged from North
America. Indeed, one of the notable features of the
current strain of S-OIV virus is the high efficiency of
human-to-human transmission. This probably explains the
alarming spread of the virus across the globe in a very
short time and therefore poses a serious pandemic threat.
Influenza virus is an enveloped RNA virus of the
Orthomyxoviridae family. It is divided into three
serologically different types (A, B, and C) according to
the antigenicity of conserved inner virus structures, i.e.,
the nucleoprotein (NP) and matrix proteins (M1 and M2)
of the envelope. It is endowed with an inherent capacity
for genetic variation and is based on the presence of a
segmented genome, with eight RNA segments that are
genetically independent of each other. Depending on the
antigenicity of two envelope spikes, which first mediate
virus adsorption to target cells in vivo or erythrocytes in
vitro (hemagglutinin, H) and second the release of viral
progeny from the infected cells (neuraminidase, N),
influenza A viruses are divided into 16 H (H1-H16) and 9
N (N1-N9) groups resulting in theoretically 16 × 9
serologic subtypes. Infuenza viruses harbor a negativesense
RNA genome, which is transcribed by its own
polymerase. RNA transcription is associated with many
point mutations persistently producing many changes in
virus proteins including the surface proteins H and N
(2,3). The mutations in surface proteins result in antigen
drift which helps the virus to escape the immunity of its
host. Since the infuenza virus genome is segmented into
eight parts, two or more different virus variants infecting
the same cell can produce progeny virus with a mixed
genome, which supports the variability of viral structures.
It may result in an antigenic shift, if two different subtypes
of influenza A virus reassort their genomic segments.
The emergence of H2N2 and H3N2 in mankind has been
traced to such genomic reassortment (4). These unique
molecular features coupled with the ability of the virus to
cause infection in a wide host range of humans, domestic
animals and birds render it a potential pandemic agent.
Domestic pigs and birds because of their proximity to
humans provide a great opportunity for the occurrence
of mixed influenza infections. Consequently, pigs and birds
act as 'melting pots' for re-assortment of viruses and play
a crucial role in evolution of influenza pandemics. The
current outbreak of S-OIV is a rare recombination of
gene segments from swine with avian and human influenza
strains. Genomic analysis of the 2009 S-OIV virus in
humans indicates that it is closely related to common
reassortant swine influenza A viruses isolated in North
America, Europe, and Asia (Fig-1) (5-7). The segments
coding for the polymerase complex, hemagglutinin,
nuclear protein, and nonstructural proteins show high
similarity with the swine H1N2 influenza A viruses isolated
in North America in the late 1990s. H1N2 and other
subtypes are descendants of the triple-reassortant swine
H3N2 viruses isolated in North America. They have
spread in swine hosts around the globe and have been
found to infect humans (8). The segments coding for the
neuraminidase and the matrix proteins of the new human
H1N1 virus are, however, distantly related to swine
viruses isolated in Europe in the early 1990s.
 
Re: The Origins of Pandemic Influenza -Reassortment events

Molecular characterization of H1N1 influenza A viruses
from human cases in North America


In this attached pdf documents you can see that how H1N2 AND H3N2 triple reassorted viruses give rise to novel H1N1 PANDEMİC..
 

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Re: The Origins of Pandemic Influenza -Reassortment events

Turkali 10

The abstract conclusion of this last paper reads

Our results strongly suggested that the viruses responsible for the 2009 outbreaks of influenza A (H1N1) virus have the ability to cross species barriers to infect human and mammalian animals based on molecular analysis. These findings may further facilitate the therapy and prevention of possible transmission from North America to other countries.

In your opinion, does this imply that the parent strains of pandemic H1N1 are also candidates for pandemic viruses? Please could you add your opinion/ interpretation of findings here?

Thank you
 
Re: The Origins of Pandemic Influenza -Reassortment events

To explain it briefly, in the beginning of my post ı described about the 1968 Hong Kong(H3N2) and 1957(H2N2) Asian reassorted viruses and how 1918 Spanish Flu genes give rise to !957 Asian Flu H2N2 and how H2N2 genes give rise to still circulating H2N3 and Also give rise to H1N2 triple reassorted viruses. In the "Panorama phylogenetic diversity and distribution of type A
influenza viruses based on their six internal gene sequences" research in the figures of the phylogenetic trees you can see that how co circulating h1n1 h3n2 viruses give rise to novel h1n1. The answer can be seen in the figures of the phylogenetic trees.
 
Re: The Origins of Pandemic Influenza -Reassortment events

Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918



The H1N1 subtype of influenza A virus has caused substantial morbidity and mortality in humans, first documented in the global pandemic of 1918 and continuing to the present day. Despite this disease burden, the evolutionary history of the A/H1N1 virus is not well understood, particularly whether there is a virological basis for several notable epidemics of unusual severity in the 1940s and 1950s. Using a data set of 71 representative complete genome sequences sampled between 1918 and 2006, we show that segmental reassortment has played an important role in the genomic evolution of A/H1N1 since 1918. Specifically, we demonstrate that an A/H1N1 isolate from the 1947 epidemic acquired novel PB2 and HA genes through intra-subtype reassortment, which may explain the abrupt antigenic evolution of this virus. Similarly, the 1951 influenza epidemic may also have been associated with reassortant A/H1N1 viruses. Intra-subtype reassortment therefore appears to be a more important process in the evolution and epidemiology of H1N1 influenza A virus than previously realized.



http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000012
 
Re: The Origins of Pandemic Influenza -Reassortment events

however H3N2 is much more virulent and in H1N1-seasons
there is often less H3N2 and average death-rates are smaller
 
Re: The Origins of Pandemic Influenza -Reassortment events

But we are in the second wave of the pandemic. We dont know either the coming third wave or a mutation will occur due to vaccination will cause excessive deaths worldwide.
 
Re: The Origins of Pandemic Influenza -Reassortment events

Turkali 10

The abstract conclusion of this last paper reads

Our results strongly suggested that the viruses responsible for the 2009 outbreaks of influenza A (H1N1) virus have the ability to cross species barriers to infect human and mammalian animals based on molecular analysis. These findings may further facilitate the therapy and prevention of possible transmission from North America to other countries.

In your opinion, does this imply that the parent strains of pandemic H1N1 are also candidates for pandemic viruses? Please could you add your opinion/ interpretation of findings here?

Thank you



yes, but it's the same HA (or similar), so we have some immunity from ***.
I'm curious, did any analysis show that *** is more potent than
normal swine-triple-reassortant-flu without the 2 Eurasian segments ?

which already did infect humans, but no pandemic.
If that strain were pandemic-capable, would(will) they have found it ?
 
Re: The Origins of Pandemic Influenza -Reassortment events

Sorry but my English is not so good. Can clearly tell me what are you asking for or what conclusion are you looking for? There are numerous number of reports to answer this and ı m not that expert! If you clearly ask your question ı will try to help you. But if you look the big picture context it s obvious that these triple assorted viruses will soon result in a pandemic. It s so easy. And there is a clue that virus was existed in a serologic survey in China.

http://www.cdc.gov/eid/content/15/11/pdfs/09-0868.pdf


"I just want this pandemic ends as soon as possible and none of people die due to virus or vaccinations"
 
Re: The Origins of Pandemic Influenza -Reassortment events

we will soon be immune against it since it's essentially the same
as the current pandemic.
A new HA is required (probaly) for a pandemic.
But it may exchange segments with ***
 
Re: The Origins of Pandemic Influenza -Reassortment events

Genetic Characterization of H3N2
Influenza Viruses Isolated from Pigs inNorth America, 1977{1999: Evidence for
Wholly Human and Reassortant Virus Genotypes




The H3N2 viruses isolated from pigs in theMidwestern U.S. by Zhou et al. (1999) are of thesame human:swine:avian reassortant genotype as that of our four Midwestern viruses. When thegene sequences of all seven of these viruses wereexamined together, we found that the Midwestern H3N2 swine viruses share very high degrees ofsequence identity with each other. At the amino acid level, the percents identity among these viruses are 98.8–100% for HA, 97.6–100% for NA, 97.0–100% for NP, 95.3–98.2% for NS,98.1–99% for M, 99.0–100% for PA, 99.5–100% for PB1 and 99.4–100% for PB2. In addition, these viruses consistently form their own phylogenetic clades for each gene segment (Figs. 1–3).Therefore, it is most plausible that these Midwestern H3N2 viruses were all derived from a singlereassortant progenitor virus that subsequently spread from state-to-state, rather than as the products of multiple, independent reassortmentevents. Given the frequent transport of pigs throughout the country, spread of a reassortant progenitor virus could easily have occurred via the movement of infected animals.
http://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1017&context=publichealthresources
 
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